Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014861

Physical Location & Seq

Genomic Coordinates Reverse (-)

60090040 .. 60091490

Gene Structure 1451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG425300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAAAAGGAAACAAGATTTTTATGGGAAAAAGACCAAGGGAGGCAAGTCTAACAATCAAAGGTTCCAAAGAACATCCGAGGCTATGCAGAGAGTCAAATCTGAATATCAGTTTTTTAGAATTGAAGTGCAGGCCACTGATATCCATCGAATGATATTGTGCTTGCCATTCGAGTTTATGAGGACACATCTTGTTAATGAATCTGGTGAGGTTACCCTTCAGCTTTCGGATGGAAGAATTTGGCACGTTGAATTGAAATGTGAAAACTCAAGAGCCGAATTCCAGTCTGGTTGGTGGGATTTTATGCAAGACAATCATTTAAAAGTTGGTGATGTATGTGTTTTTATGTTGATTGACCATGCTAGACTTCTATTTGAAGTTGTCATTTTCCACAAGGACCGCACCATAGAACCTGTAAATTGCATCTTGCCAGCAGACACCGATGAAGATAACGGTGATAAAGAAGACAGCAACGAAAATGATGAGGACAATGATAATGATGTTGCTGAAGACAACCCTTCTTTCAAAATTGTCATACGACCATCTTATATCAAGCGTCTCTTGTGGCTGCCTTCTAAGTTTTCCCAGACACATCTTACTTTGGACACTACATATGCCACCCTTTGTGTTTCGGGAGAGAAGAGAACTTGGTCTGTTAAATTAAATAATGAAGGAGCAAGAGCTAAATTTCAGTCTGGTTGGAGTAAGTTCGTGCAAGATAATAATTTGAAAGTCGGAGACGTGTGCAAGTTTGTGATCATTGATGCTGATAGAGTCTCATTGGAAGTAGTCATAGAAGCTGGGAATACCACTCTATCCTTAGACAATGATGATGATGATGAAAATGAAGATTCAGAATTGGTTGAAGCTTCATTAGCACAACGGCCTCACAAGAGAAAGAGAACAGGTTGTAATGTACCAACTTCGTATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

311

Amino Acids

35.87

Weight (kDa)

5.23

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	38 - 130	1.2e-15	B3 DNA binding domain
B3	PF02362	175 - 260	1.3e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014861)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233431
rosa_roxburghii	Rroxscaffold_3G00226830 Rroxscaffold_3G00226890 Rroxscaffold_3G00227310
rosa_rugosa	Rorug07G0280600
rosa_samantha	Rh7AG436400 Rh7BG409400 Rh7BG409500 Rh7CG456100 Rh7CG456200 Rh7CG456300 Rh7DG425300 Rh7DG425400 Rh7DG425500 Rh7DG425600
rosa_wichuraiana	Rw0G022480 Rw7G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	400
AcsI	RAATTY	3 cut(s)	237, 278, 686
AcuI	CTGAAG	2 cut(s)	203, 528
AfaI	GTAC	1 cut(s)	918
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	7 cut(s)	125, 251, 256, 377, 526, 730, 866
AjiI	CACGTC	1 cut(s)	742
AluBI	AGCT	4 cut(s)	223, 683, 800, 869
AluI	AGCT	4 cut(s)	223, 683, 800, 869
Alw26I	GTCTC	3 cut(s)	563, 732, 781
AoxI	GGCC	2 cut(s)	132, 884
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	3 cut(s)	237, 278, 686
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	218, 341, 467
AvaII	GGWCC	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	471, 516
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	3 cut(s)	153, 224, 550
BceAI	ACGGC	1 cut(s)	899
BclI	TGATCA	1 cut(s)	756
BcoDI	GTCTC	3 cut(s)	563, 732, 781
BfaI	CTAG	1 cut(s)	363
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	397
BmgBI	CACGTC	1 cut(s)	742
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	65
BmsI	GCATC	2 cut(s)	432, 754
BpiI	GAAGAC	2 cut(s)	471, 516
BpuEI	CTTGAG	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	36, 78
Bse1I	ACTGG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	36, 78
BseGI	GGATG	2 cut(s)	74, 235
BseJI	GATNNNNATC	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	555
BseYI	CCCAGC	1 cut(s)	800
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	2 cut(s)	134, 886
BsmAI	GTCTC	3 cut(s)	563, 732, 781
BsmBI	CGTCTC	2 cut(s)	563, 732
BsnI	GGCC	2 cut(s)	134, 886
Bsp143I	GATC	1 cut(s)	756
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	2 cut(s)	134, 886
BspLI	GGNNCC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	36, 78
BssMI	GATC	1 cut(s)	756
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	132, 164, 432
BstDEI	CTNAG	2 cut(s)	576, 820
BstEII	GGTNACC	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	74, 235
BstKTI	GATC	1 cut(s)	759
BstMAI	GTCTC	3 cut(s)	563, 732, 781
BstMBI	GATC	1 cut(s)	756
BstMWI	GCNNNNNNNGC	1 cut(s)	875
BstPI	GGTNACC	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	555
BstV2I	GAAGAC	2 cut(s)	471, 516
BsuRI	GGCC	2 cut(s)	134, 886
BtrI	CACGTC	1 cut(s)	742
BtsCI	GGATG	2 cut(s)	74, 235
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	132, 164, 432
Cfr13I	GGNCC	1 cut(s)	397
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	917
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	9 cut(s)	83, 134, 223, 275, 568, 683, 800, 869, 886
CviKI_1	RGCY	9 cut(s)	83, 134, 223, 275, 568, 683, 800, 869, 886
CviQI	GTAC	1 cut(s)	917
DdeI	CTNAG	2 cut(s)	576, 820
DpnI	GATC	1 cut(s)	758
DpnII	GATC	1 cut(s)	756
DraI	TTTAAA	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	635
EarI	CTCTTC	1 cut(s)	635
Eco130I	CCWWGG	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	203, 528
Eco91I	GGTNACC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	278
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	2 cut(s)	563, 732
FaeI	CATG	1 cut(s)	362
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FatI	CATG	1 cut(s)	358
FauNDI	CATATG	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	756
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	2 cut(s)	61, 242
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	1 cut(s)	569
GsaI	CCCAGC	1 cut(s)	804
HaeIII	GGCC	2 cut(s)	134, 886
HgaI	GACGC	1 cut(s)	545
Hin1II	CATG	1 cut(s)	362
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	4 cut(s)	93, 200, 774, 851
HphI	GGTGA	3 cut(s)	218, 341, 467
Hpy188I	TCNGA	5 cut(s)	79, 103, 229, 737, 856
Hpy188III	TCNNGA	2 cut(s)	270, 633
HpyAV	CCTTC	4 cut(s)	227, 528, 582, 665
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	2 cut(s)	246, 741
HpyCH4V	TGCA	6 cut(s)	88, 130, 307, 423, 715, 747
HpyF10VI	GCNNNNNNNGC	1 cut(s)	875
HpyF3I	CTNAG	2 cut(s)	576, 820
HpySE526I	ACGT	2 cut(s)	246, 741
Hsp92II	CATG	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	756
Kzo9I	GATC	1 cut(s)	756
LmnI	GCTCC	1 cut(s)	674
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	2 cut(s)	432, 754
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	2 cut(s)	246, 741
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	758
MboI	GATC	1 cut(s)	756
MboII	GAAGA	6 cut(s)	246, 458, 476, 521, 652, 860
MlyI	GAGTC	2 cut(s)	102, 783
MmeI	TCCRAC	2 cut(s)	680, 715
MnlI	CCTC	6 cut(s)	35, 73, 174, 202, 478, 897
MseI	TTAA	4 cut(s)	195, 320, 657, 662
MwoI	GCNNNNNNNGC	1 cut(s)	875
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	1 cut(s)	756
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	200, 851
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	2 cut(s)	101, 782
PpsI	GAGTC	2 cut(s)	101, 782
PspEI	GGTNACC	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	800
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	397
RsaI	GTAC	1 cut(s)	918
RsaNI	GTAC	1 cut(s)	917
SaqAI	TTAA	4 cut(s)	195, 320, 657, 662
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	1 cut(s)	756
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	2 cut(s)	102, 783
SfaNI	GCATC	2 cut(s)	432, 754
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SsiI	CCGC	1 cut(s)	400
SspMI	CTAG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	2 cut(s)	249, 744
TaqI	TCGA	2 cut(s)	148, 171
TfiI	GAWTC	2 cut(s)	200, 851
Tru1I	TTAA	4 cut(s)	195, 320, 657, 662
Tru9I	TTAA	4 cut(s)	195, 320, 657, 662
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	1 cut(s)	568
TspDTI	ATGAA	7 cut(s)	17, 213, 459, 684, 855, 861, 861
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	3 cut(s)	237, 278, 686
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.