Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014861

Physical Location & Seq

Genomic Coordinates Reverse (-)

59983230 .. 59986330

Gene Structure 3101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG456300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCTGTTCATTCAGATGCTGACCTTGAATCTGCTGCTGAAGTTTTGGTTCCCTCAAATAGGTATCATGATTTCACAACCACTGTTTGTTATTTGTCCCCTAGACTGCAGAAGTTACTAGAATCTTGTATTGAGCGTCGCCCTCTTCTGATCATCTCCCACAGAAGATTAAAAGATATACTGTTCCTTGATCTTGCTTTGGCTTCAGCTGTCGAAACAACCTTGGAAAGGGGACTCACAGATCTACATTTTTCTAACCCACCGGTAACCATCAAGTCTCAGTGCTACCAAAAGAAGATCCAGCCCAGTGCAAAATATCTTGGTAATGTGCTTGGTGTTCAGAAGTCAGTGGTATGTTGTTGTTGCTTGACTATTGCATCTATAGTAGACAACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

132

Amino Acids

14.7

Weight (kDa)

6.88

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014861)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233431
rosa_roxburghii	Rroxscaffold_3G00226830 Rroxscaffold_3G00226890 Rroxscaffold_3G00227310
rosa_rugosa	Rorug07G0280600
rosa_samantha	Rh7AG436400 Rh7BG409400 Rh7BG409500 Rh7CG456100 Rh7CG456200 Rh7CG456300 Rh7DG425300 Rh7DG425400 Rh7DG425500 Rh7DG425600
rosa_wichuraiana	Rw0G022480 Rw7G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	387
AclWI	GGATC	1 cut(s)	292
AcuI	CTGAAG	2 cut(s)	60, 189
AfiI	CCNNNNNNNGG	2 cut(s)	60, 228
AgeI	ACCGGT	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	292
AlwNI	CAGNNNCTG	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	2 cut(s)	102, 119
BfmI	CTRYAG	2 cut(s)	107, 381
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	51
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	7, 386
BmuI	ACTGGG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 228
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	60, 228
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	22
BshTI	ACCGGT	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	2 cut(s)	82, 246
BslI	CCNNNNNNNGG	2 cut(s)	60, 228
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	82, 246
Bsp143I	GATC	4 cut(s)	150, 190, 241, 297
BspCNI	CTCAG	1 cut(s)	292
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	111
BspPI	GGATC	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	150, 190, 241, 297
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	85, 183
Bst6I	CTCTTC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	265
BstENI	CCTNNNNNAGG	2 cut(s)	58, 226
BstKTI	GATC	4 cut(s)	153, 193, 244, 300
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	4 cut(s)	150, 190, 241, 297
BstPI	GGTNACC	1 cut(s)	265
BstSFI	CTRYAG	2 cut(s)	107, 381
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	241, 297
BstYI	RGATCY	2 cut(s)	241, 297
BtsIMutI	CAGTG	4 cut(s)	81, 287, 313, 354
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	262
CseI	GACGC	1 cut(s)	125
CspAI	ACCGGT	1 cut(s)	262
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	4 cut(s)	5, 203, 209, 304
CviKI_1	RGCY	4 cut(s)	5, 203, 209, 304
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	4 cut(s)	152, 192, 243, 299
DpnII	GATC	4 cut(s)	150, 190, 241, 297
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	222
Eco57I	CTGAAG	2 cut(s)	60, 189
Eco91I	GGTNACC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	2 cut(s)	58, 226
EcoO65I	GGTNACC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	71
FaiI	YATR	4 cut(s)	69, 179, 355, 383
FaqI	GGGAC	2 cut(s)	82, 246
FatI	CATG	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	2 cut(s)	102, 119
GluI	GCNGC	1 cut(s)	36
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	71
HinfI	GANTC	3 cut(s)	29, 122, 234
HpaII	CCGG	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	3 cut(s)	16, 150, 342
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	141
HpyCH4III	ACNGT	2 cut(s)	85, 183
HpyCH4V	TGCA	3 cut(s)	109, 311, 377
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	71
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	150, 190, 241, 297
LpnPI	CCDG	3 cut(s)	276, 314, 319
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	7, 386
MaeI	CTAG	2 cut(s)	102, 119
MaeIII	GTNAC	2 cut(s)	114, 265
MalI	GATC	4 cut(s)	152, 192, 243, 299
MboI	GATC	4 cut(s)	150, 190, 241, 297
MboII	GAAGA	3 cut(s)	137, 177, 307
MflI	RGATCY	2 cut(s)	241, 297
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	64, 153
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	263
NdeII	GATC	4 cut(s)	150, 190, 241, 297
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	51
PagI	TCATGA	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	29, 122
PinAI	ACCGGT	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	111
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	241, 297
PvuII	CAGCTG	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	4 cut(s)	150, 190, 241, 297
SchI	GAGTC	1 cut(s)	228
SetI	ASST	4 cut(s)	27, 65, 211, 224
SfaNI	GCATC	2 cut(s)	7, 386
SfcI	CTRYAG	2 cut(s)	107, 381
SmiMI	CAYNNNNRTG	1 cut(s)	15
SspMI	CTAG	2 cut(s)	102, 119
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	85, 183
TaqI	TCGA	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	29, 122
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	4 cut(s)	88, 287, 313, 354
TseI	GCWGC	1 cut(s)	35
TspRI	CASTG	4 cut(s)	88, 287, 313, 354
XagI	CCTNNNNNAGG	2 cut(s)	58, 226
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	2 cut(s)	102, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.