Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0014861

Physical Location & Seq

Genomic Coordinates Reverse (-)

45984065 .. 45985652

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG409500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCAACATAAAAAGGCTGTTCATTCAGGTGCTGACCTTGAATCTGCTGCTGAAGTTTTGGTTCCCTCTAATAGGTATCATGATTTCACAAGCACTGTTTGTTATTTGTCCCCTAGACTGCAGAAGTTACAAGAATCTTGTATTGAGCGTCGCCCTCTTCTGATCATCTCCCACAGAAGATTAAAAGATATGCTGTTCCTTGATCTTGCTTTGGCTTCAGCTGTCGAAACAACCTTGGAAAGGGGACTCACAGATCTACATTTTTCTAACCCACCGTACCGTATTAGTGAACTGTATAAACCCAATAATGGTCAGTCAGCATTACAATCAAAGGCTATTCTTGATTGCTTACAATTAGTACTTGCTGATAGGTCTCAGTGCTACCAAAAGAAGATCCAGCCCAGTGCAAAATATCTTGGTAATGTGCTTGGTGTTCAGAAGTCAGTGATTGATACTTTTTCTGAGGAGTTACTAAGGGCTGGATCAGAGACTATTCTCTCTACTCTCATCAATCACTTTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

175

Amino Acids

19.68

Weight (kDa)

7.71

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014861)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233431
rosa_roxburghii	Rroxscaffold_3G00226830 Rroxscaffold_3G00226890 Rroxscaffold_3G00227310
rosa_rugosa	Rorug07G0280600
rosa_samantha	Rh7AG436400 Rh7BG409400 Rh7BG409500 Rh7CG456100 Rh7CG456200 Rh7CG456300 Rh7DG425300 Rh7DG425400 Rh7DG425500 Rh7DG425600
rosa_wichuraiana	Rw0G022480 Rw7G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	388, 490
AcuI	CTGAAG	2 cut(s)	72, 201
AfaI	GTAC	2 cut(s)	278, 360
AfiI	CCNNNNNNNGG	3 cut(s)	72, 240, 308
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	2 cut(s)	378, 482
AlwI	GGATC	2 cut(s)	388, 490
AlwNI	CAGNNNCTG	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	378, 482
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	119
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmcAI	AGTACT	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 240, 308
Bse1I	ACTGG	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	3 cut(s)	72, 240, 308
BseMII	CTCAG	2 cut(s)	389, 453
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	94, 258
BslI	CCNNNNNNNGG	3 cut(s)	72, 240, 308
BsmAI	GTCTC	2 cut(s)	378, 482
BsmFI	GGGAC	2 cut(s)	94, 258
Bso31I	GGTCTC	1 cut(s)	378
Bsp143I	GATC	5 cut(s)	162, 202, 253, 393, 482
BspCNI	CTCAG	2 cut(s)	388, 454
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	123
BspPI	GGATC	2 cut(s)	388, 490
BspTNI	GGTCTC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	5 cut(s)	162, 202, 253, 393, 482
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	4 cut(s)	97, 276, 281, 294
Bst6I	CTCTTC	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	375, 462, 473
BstENI	CCTNNNNNAGG	2 cut(s)	70, 238
BstKTI	GATC	5 cut(s)	165, 205, 256, 396, 485
BstMAI	GTCTC	2 cut(s)	378, 482
BstMBI	GATC	5 cut(s)	162, 202, 253, 393, 482
BstSFI	CTRYAG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	2 cut(s)	253, 393
BstYI	RGATCY	2 cut(s)	253, 393
BtsIMutI	CAGTG	4 cut(s)	93, 383, 409, 450
CaiI	CAGNNNCTG	1 cut(s)	32
CciI	TCATGA	1 cut(s)	79
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	277, 359
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	6 cut(s)	17, 215, 221, 335, 400, 479
CviKI_1	RGCY	6 cut(s)	17, 215, 221, 335, 400, 479
CviQI	GTAC	2 cut(s)	277, 359
DdeI	CTNAG	3 cut(s)	375, 462, 473
DpnI	GATC	5 cut(s)	164, 204, 255, 395, 484
DpnII	GATC	5 cut(s)	162, 202, 253, 393, 482
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	72, 201
EcoNI	CCTNNNNNAGG	2 cut(s)	70, 238
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	83
FaiI	YATR	4 cut(s)	9, 81, 191, 297
FaqI	GGGAC	2 cut(s)	94, 258
FatI	CATG	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	1 cut(s)	48
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	83
HinfI	GANTC	3 cut(s)	41, 134, 246
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	4 cut(s)	162, 438, 463, 487
Hpy188III	TCNNGA	2 cut(s)	80, 341
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	153
HpyCH4III	ACNGT	4 cut(s)	97, 276, 281, 294
HpyCH4V	TGCA	3 cut(s)	4, 121, 407
HpyF3I	CTNAG	3 cut(s)	375, 462, 473
Hsp92II	CATG	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	5 cut(s)	162, 202, 253, 393, 482
LpnPI	CCDG	4 cut(s)	12, 410, 415, 465
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	126, 468
MalI	GATC	5 cut(s)	164, 204, 255, 395, 484
MboI	GATC	5 cut(s)	162, 202, 253, 393, 482
MboII	GAAGA	3 cut(s)	149, 189, 403
MflI	RGATCY	2 cut(s)	253, 393
MluCI	AATT	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	3 cut(s)	76, 165, 457
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	2 cut(s)	27, 519
MspA1I	CMGCKG	1 cut(s)	221
NdeII	GATC	5 cut(s)	162, 202, 253, 393, 482
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	63
PagI	TCATGA	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	41, 134
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	253, 393
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	278, 360
RsaNI	GTAC	2 cut(s)	277, 359
RseI	CAYNNNNRTG	2 cut(s)	27, 519
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	5 cut(s)	162, 202, 253, 393, 482
ScaI	AGTACT	1 cut(s)	360
SchI	GAGTC	1 cut(s)	240
SetI	ASST	6 cut(s)	31, 39, 77, 223, 236, 374
SfcI	CTRYAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	27, 519
Sse9I	AATT	1 cut(s)	353
SspMI	CTAG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	4 cut(s)	97, 276, 281, 294
TaqI	TCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	353
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	41, 134
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	4 cut(s)	100, 383, 409, 450
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	11
TspRI	CASTG	4 cut(s)	100, 383, 409, 450
XagI	CCTNNNNNAGG	2 cut(s)	70, 238
XspI	CTAG	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.