Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014861

Physical Location & Seq

Genomic Coordinates Reverse (-)

60091569 .. 60092371

Gene Structure 803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG425400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACTTCTCTTCGTCCCCAAGTTGACTGCCGGCCAAGATTTCAAAACATATTCTGCCAGTATTTTTCAGAGAAAACAAAAAGAAAACTTAGGCTTCCAAGAAAGTATGTGAAGGACCATGGAGATGAGCTATCAAATCCTGCACATCTTAAGTTTCGCGGTAGAGAATGGGCAATGAAACTTAAAAGATACAAAGATGAGGCTTGGTTTGACAAGGGTTGGGAAGAGTTCTCAAGCTTTTACTCTTTTGAGTACAACGACCTCCTCATTTTTGGATATGAAGGCAATTCAACATTCCAGGTTTCCCTTTTCGATAAAATACTGAAGTTGATAGAAACTGATGCAGATGATTTTCAACCAAATCCTCTGCTTCATAGCAGAACTAGGACAAGTTCAAGTGGTGGTAAAGCAGAAGTACAAGAGGAGGCTCCAAGTCTTGAGAAATCACAAATAAAAACCAAAGTTACACATAGGTCCAGATCAGAATTGAAAACTTCAACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

168

Amino Acids

19.89

Weight (kDa)

9.39

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	25 - 106	5.4e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014861)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233431
rosa_roxburghii	Rroxscaffold_3G00226830 Rroxscaffold_3G00226890 Rroxscaffold_3G00227310
rosa_rugosa	Rorug07G0280600
rosa_samantha	Rh7AG436400 Rh7BG409400 Rh7BG409500 Rh7CG456100 Rh7CG456200 Rh7CG456300 Rh7DG425300 Rh7DG425400 Rh7DG425500 Rh7DG425600
rosa_wichuraiana	Rw0G022480 Rw7G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	2 cut(s)	254, 417
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	6 cut(s)	44, 291, 356, 396, 490, 498
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	2 cut(s)	130, 237
AluI	AGCT	2 cut(s)	130, 237
AoxI	GGCC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	115, 474
AvaII	GGWCC	2 cut(s)	115, 474
BciT130I	CCWGG	1 cut(s)	299
BfaI	CTAG	1 cut(s)	384
BfrI	CTTAAG	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	2 cut(s)	115, 474
BmgT120I	GGNCC	2 cut(s)	115, 474
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	217, 458
BsaJI	CCNNGG	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	2 cut(s)	254, 437
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	31
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	479
Bsp19I	CCATGG	1 cut(s)	118
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	429
BspTI	CTTAAG	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	299
Bst6I	CTCTTC	2 cut(s)	15, 219
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	1 cut(s)	482
BstMBI	GATC	1 cut(s)	479
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	115, 474
Csp6I	GTAC	2 cut(s)	253, 416
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	6 cut(s)	34, 94, 130, 203, 237, 428
CviKI_1	RGCY	6 cut(s)	34, 94, 130, 203, 237, 428
CviQI	GTAC	2 cut(s)	253, 416
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	1 cut(s)	481
DpnII	GATC	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	2 cut(s)	15, 219
EarI	CTCTTC	2 cut(s)	15, 219
Eco130I	CCWWGG	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	115, 474
Eco57I	CTGAAG	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	1 cut(s)	122
FaiI	YATR	6 cut(s)	50, 108, 120, 279, 375, 471
FatI	CATG	1 cut(s)	118
FspBI	CTAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	31
Hin1II	CATG	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	235
HpaII	CCGG	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	70, 484
Hpy188III	TCNNGA	2 cut(s)	437, 477
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	106, 275
HpyCH4V	TGCA	2 cut(s)	143, 344
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	479
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	6 cut(s)	44, 71, 153, 284, 311, 490
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	1 cut(s)	481
MboI	GATC	1 cut(s)	479
MboII	GAAGA	1 cut(s)	236
MluCI	AATT	2 cut(s)	286, 485
MnlI	CCTC	6 cut(s)	193, 272, 275, 375, 415, 418
MroNI	GCCGGC	1 cut(s)	30
MseI	TTAA	2 cut(s)	150, 183
MslI	CAYNNNNRTG	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	159
NaeI	GCCGGC	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	479
NgoMIV	GCCGGC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	429
PdiI	GCCGGC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	115, 474
RsaI	GTAC	2 cut(s)	254, 417
RsaNI	GTAC	2 cut(s)	253, 416
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	150, 183
Sau3AI	GATC	1 cut(s)	479
Sau96I	GGNCC	2 cut(s)	115, 474
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	6 cut(s)	132, 239, 264, 303, 476, 506
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	2 cut(s)	115, 474
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	3 cut(s)	149, 232, 437
SmoI	CTYRAG	3 cut(s)	149, 232, 437
Sse9I	AATT	2 cut(s)	286, 485
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	118
TaqI	TCGA	1 cut(s)	312
TasI	AATT	2 cut(s)	286, 485
TatI	WGTACW	2 cut(s)	252, 415
Tru1I	TTAA	2 cut(s)	150, 183
Tru9I	TTAA	2 cut(s)	150, 183
TspDTI	ATGAA	3 cut(s)	191, 294, 362
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	115, 474
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.