Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01044

Orthogroup ID

OG0014861

Physical Location & Seq

Genomic Coordinates Reverse (-)

26263 .. 31797

Gene Structure 5535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G022480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGTGCCAGCATGGATTAAAATTCCCATGTCAGTTGCCATACCATTTGGAGCCTTTGAAAAGGTCATATTAGAAGATGTTAATAAGAGGCTTCCAAGAAAGTATGTGAAGGACCATGGAGATGAGCTATCAAATCCTGCACATCTAAAGTTTCGCGGTAGAGAATGGGCAATGAAACTTAAAAGATACAAAGATGAGGCTTGGTTTGACAAGGGTTGGGAAGAGTTCTCAAGCTTTTACTCTTTTGAGTACAACGACCTCCTCATTTTTGGATATGAAGGCAATTCAACATTCCAGGTTTCCCTTTTCGATAAAATACTGAAGTTGATAGAAACTGATGCAGATGATTTTCAACCAAATCCTCTGCTTCATAGCAGAACTAGGACAAGTTCAAGTGGTGGTAAAGCAGAAGTACAAGAGGAGGCTCCAAGTCTTGAGAAATCACAAATAAAAACCAAAGTTACACATAGGTCCAGATCAGAATTGAAAAGGAAACAAGATTTTTATGGGAAAAAGACCAAGGGAGGCAAGTCTAACAATCAAAGGTTCCAAAGAACATCCGAGGCTATGCAGAGAGTCAAATCTGAATATCAGTTTTTTAGAATTGAAGTGCAGGCCACTGATATCCATCGAATGATATTGTGCTTGCCATTCGAGTTTATGAGGACACATCTTGTTAATGAATCTGGTGAGGTTACCCTTCAGCTTTCGGATGGAAGAATTTGGCACGTTGAATTGAAATGTGAAAACTCAAGAGCCGAATTCCAGTCTGGTTGGTGGGATTTTATGCAAGACAATCATTTAAAAGTTGGTGATGTATGTGTTTTTATGTTGATTGACCATGCTAGACTTCTATTTGAAGTTGTCATTTTCCACAAGGACCGCACCATAGAACCTGTAAATTGCATCTTGCCAGCAGCATATCACCTCCACTCTTGGGATGGACCTGAAGACACCGATGAAGATAACGGTGATAAAGAAGACAGCAACGAAAATGATGAGGACAATGATAATGATGTTGCTGAAGACAACCCTTCTTTCAAAATTGTCATACGACCATCTTATATCAAGCGTCTCTTGTGGCTGCCTTCTAAGTTTTCCCAGACACATCTTACTTTGGACACTACATATGCCACCCTTTGTGTTTCGGGAGAGAAGAGAACTTGGTCTGTTAAATTAAATAATGAAGGAGCAAGAGCTAAATTTCAGTCTGGTTGGAGTAAGTTCGTGCAAGATAATAATTTGAAAGTCGGAGACGTGTGCAAGTTTGTGATCATTGATGCTGATAGAGTCTCATTGGAAGTAGTCATAGAAGCTGGGAATACCACTCTATCCTTAGGTCAGTTATTTATTATTTTGGAATTGTTATTGATGGAAGTGCCAAAAAGACTGACTATGCTATTGTTCCTTCCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

472

Amino Acids

54.74

Weight (kDa)

5.88

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	30 - 105	8.3e-09	B3 DNA binding domain
B3	PF02362	199 - 291	2.5e-15	B3 DNA binding domain
B3	PF02362	348 - 432	3.1e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014861)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233431
rosa_roxburghii	Rroxscaffold_3G00226830 Rroxscaffold_3G00226890 Rroxscaffold_3G00227310
rosa_rugosa	Rorug07G0280600
rosa_samantha	Rh7AG436400 Rh7BG409400 Rh7BG409500 Rh7CG456100 Rh7CG456200 Rh7CG456300 Rh7DG425300 Rh7DG425400 Rh7DG425500 Rh7DG425600
rosa_wichuraiana	Rw0G022480 Rw7G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1417
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	156, 883
AcsI	RAATTY	4 cut(s)	21, 720, 761, 1202
AcuI	CTGAAG	4 cut(s)	341, 686, 969, 1044
AfaI	GTAC	2 cut(s)	251, 414
AfiI	CCNNNNNNNGG	1 cut(s)	937
AflIII	ACRYGT	1 cut(s)	1257
AjiI	CACGTC	1 cut(s)	1258
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	5 cut(s)	127, 234, 706, 1199, 1316
AluI	AGCT	5 cut(s)	127, 234, 706, 1199, 1316
Alw26I	GTCTC	3 cut(s)	1079, 1248, 1297
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	2 cut(s)	917, 1084
ApoI	RAATTY	4 cut(s)	21, 720, 761, 1202
AspS9I	GGNCC	4 cut(s)	112, 471, 880, 944
AsuHPI	GGTGA	4 cut(s)	701, 824, 917, 983
AvaII	GGWCC	4 cut(s)	112, 471, 880, 944
AxyI	CCTNAGG	1 cut(s)	1336
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	3 cut(s)	957, 987, 1032
BbvI	GCAGC	2 cut(s)	929, 1071
BccI	CCATC	5 cut(s)	636, 707, 935, 1066, 1366
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	1272
BcoDI	GTCTC	3 cut(s)	1079, 1248, 1297
BfaI	CTAG	2 cut(s)	381, 846
BisI	GCNGC	2 cut(s)	918, 1085
BlsI	GCNGC	2 cut(s)	919, 1086
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	4 cut(s)	112, 471, 880, 944
BmgBI	CACGTC	1 cut(s)	1258
BmgT120I	GGNCC	4 cut(s)	112, 471, 880, 944
BmiI	GGNNCC	4 cut(s)	6, 52, 426, 548
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	3 cut(s)	328, 915, 1270
BpiI	GAAGAC	3 cut(s)	957, 987, 1032
BpuEI	CTTGAG	3 cut(s)	214, 455, 736
BsaBI	GATNNNNATC	1 cut(s)	627
BsaJI	CCNNGG	3 cut(s)	115, 519, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	937
Bse1I	ACTGG	1 cut(s)	766
Bse21I	CCTNAGG	1 cut(s)	1336
Bse3DI	GCAATG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	3 cut(s)	115, 519, 561
BseGI	GGATG	3 cut(s)	557, 718, 946
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	1 cut(s)	937
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	766
BseRI	GAGGAG	2 cut(s)	251, 434
BseXI	GCAGC	2 cut(s)	929, 1071
BseYI	CCCAGC	1 cut(s)	1316
BsgI	GTGCAG	2 cut(s)	123, 632
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	937
BsmAI	GTCTC	3 cut(s)	1079, 1248, 1297
BsmBI	CGTCTC	2 cut(s)	1079, 1248
BsnI	GGCC	1 cut(s)	617
Bsp143I	GATC	2 cut(s)	476, 1272
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	2 cut(s)	156, 883
BspANI	GGCC	1 cut(s)	617
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	4 cut(s)	6, 52, 426, 548
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	766
BssECI	CCNNGG	3 cut(s)	115, 519, 561
BssMI	GATC	2 cut(s)	476, 1272
BssT1I	CCWWGG	2 cut(s)	115, 519
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	971
Bst6I	CTCTTC	2 cut(s)	216, 1151
BstC8I	GCNNGC	4 cut(s)	9, 615, 647, 915
BstDEI	CTNAG	2 cut(s)	1092, 1336
BstDSI	CCRYGG	1 cut(s)	115
BstEII	GGTNACC	1 cut(s)	694
BstF5I	GGATG	3 cut(s)	557, 718, 946
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	479, 1275
BstMAI	GTCTC	3 cut(s)	1079, 1248, 1297
BstMBI	GATC	2 cut(s)	476, 1272
BstNI	CCWGG	1 cut(s)	296
BstPI	GGTNACC	1 cut(s)	694
BstSCI	CCNGG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	929, 1071
BstV2I	GAAGAC	3 cut(s)	957, 987, 1032
Bsu36I	CCTNAGG	1 cut(s)	1336
BsuRI	GGCC	1 cut(s)	617
BtgI	CCRYGG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	1258
BtsCI	GGATG	3 cut(s)	557, 718, 946
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	4 cut(s)	9, 615, 647, 915
Cfr13I	GGNCC	4 cut(s)	112, 471, 880, 944
CseI	GACGC	1 cut(s)	1061
Csp6I	GTAC	2 cut(s)	250, 413
CviAII	CATG	4 cut(s)	12, 28, 116, 842
CviQI	GTAC	2 cut(s)	250, 413
DdeI	CTNAG	2 cut(s)	1092, 1336
DpnI	GATC	2 cut(s)	478, 1274
DpnII	GATC	2 cut(s)	476, 1272
DraI	TTTAAA	1 cut(s)	804
Eam1104I	CTCTTC	2 cut(s)	216, 1151
EarI	CTCTTC	2 cut(s)	216, 1151
Eco130I	CCWWGG	2 cut(s)	115, 519
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	4 cut(s)	112, 471, 880, 944
Eco57I	CTGAAG	4 cut(s)	341, 686, 969, 1044
Eco81I	CCTNAGG	1 cut(s)	1336
Eco91I	GGTNACC	1 cut(s)	694
EcoO65I	GGTNACC	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	2 cut(s)	115, 519
ErhI	CCWWGG	2 cut(s)	115, 519
Esp3I	CGTCTC	2 cut(s)	1079, 1248
FaeI	CATG	4 cut(s)	15, 31, 119, 845
FalI	AAGNNNNNCTT	2 cut(s)	1061, 1093
FatI	CATG	4 cut(s)	11, 27, 115, 841
FauNDI	CATATG	1 cut(s)	1129
FbaI	TGATCA	1 cut(s)	1272
Fnu4HI	GCNGC	2 cut(s)	918, 1085
FokI	GGATG	3 cut(s)	544, 725, 953
Fsp4HI	GCNGC	2 cut(s)	918, 1085
FspBI	CTAG	2 cut(s)	381, 846
GluI	GCNGC	2 cut(s)	918, 1085
GsaI	CCCAGC	1 cut(s)	1320
HaeIII	GGCC	1 cut(s)	617
HgaI	GACGC	1 cut(s)	1061
Hin1II	CATG	4 cut(s)	15, 31, 119, 845
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	3 cut(s)	576, 683, 1290
HphI	GGTGA	4 cut(s)	701, 824, 917, 983
Hpy188I	TCNGA	5 cut(s)	481, 562, 586, 712, 1253
Hpy188III	TCNNGA	4 cut(s)	434, 474, 753, 1149
HpyAV	CCTTC	7 cut(s)	103, 272, 710, 1044, 1098, 1181, 1418
HpyCH4III	ACNGT	1 cut(s)	971
HpyCH4IV	ACGT	2 cut(s)	729, 1257
HpyCH4V	TGCA	8 cut(s)	140, 341, 571, 613, 790, 906, 1231, 1263
HpyF3I	CTNAG	2 cut(s)	1092, 1336
HpySE526I	ACGT	2 cut(s)	729, 1257
Hsp92II	CATG	4 cut(s)	15, 31, 119, 845
Ksp22I	TGATCA	1 cut(s)	1272
Kzo9I	GATC	2 cut(s)	476, 1272
LmnI	GCTCC	3 cut(s)	50, 430, 1190
Lsp1109I	GCAGC	2 cut(s)	929, 1071
LweI	GCATC	3 cut(s)	328, 915, 1270
MaeI	CTAG	2 cut(s)	381, 846
MaeII	ACGT	2 cut(s)	729, 1257
MaeIII	GTNAC	2 cut(s)	460, 694
MalI	GATC	2 cut(s)	478, 1274
MboI	GATC	2 cut(s)	476, 1272
MboII	GAAGA	8 cut(s)	86, 233, 729, 962, 974, 992, 1037, 1168
MlyI	GAGTC	2 cut(s)	585, 1299
MmeI	TCCRAC	2 cut(s)	1196, 1231
MseI	TTAA	7 cut(s)	18, 81, 180, 678, 803, 1173, 1178
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	115
NdeI	CATATG	1 cut(s)	1129
NdeII	GATC	2 cut(s)	476, 1272
NlaIII	CATG	4 cut(s)	15, 31, 119, 845
NlaIV	GGNNCC	4 cut(s)	6, 52, 426, 548
PfeI	GAWTC	1 cut(s)	683
PkrI	GCNGC	2 cut(s)	919, 1086
PleI	GAGTC	2 cut(s)	584, 1298
PpsI	GAGTC	2 cut(s)	584, 1298
PsiI	TTATAA	1 cut(s)	1417
Psp6I	CCWGG	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	1316
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	4 cut(s)	6, 52, 426, 548
PspPI	GGNCC	4 cut(s)	112, 471, 880, 944
RsaI	GTAC	2 cut(s)	251, 414
RsaNI	GTAC	2 cut(s)	250, 413
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	7 cut(s)	18, 81, 180, 678, 803, 1173, 1178
SatI	GCNGC	2 cut(s)	918, 1085
Sau3AI	GATC	2 cut(s)	476, 1272
Sau96I	GGNCC	4 cut(s)	112, 471, 880, 944
SchI	GAGTC	2 cut(s)	585, 1299
ScrFI	CCNGG	1 cut(s)	296
SfaNI	GCATC	3 cut(s)	328, 915, 1270
SinI	GGWCC	4 cut(s)	112, 471, 880, 944
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	3 cut(s)	229, 434, 751
SmoI	CTYRAG	3 cut(s)	229, 434, 751
SsiI	CCGC	2 cut(s)	156, 883
SspMI	CTAG	2 cut(s)	381, 846
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	2 cut(s)	115, 519
TaaI	ACNGT	1 cut(s)	971
TaiI	ACGT	2 cut(s)	732, 1260
TaqI	TCGA	3 cut(s)	309, 631, 654
TatI	WGTACW	2 cut(s)	249, 412
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	7 cut(s)	18, 81, 180, 678, 803, 1173, 1178
Tru9I	TTAA	7 cut(s)	18, 81, 180, 678, 803, 1173, 1178
TscAI	CASTG	1 cut(s)	625
TseI	GCWGC	2 cut(s)	917, 1084
TspDTI	ATGAA	6 cut(s)	188, 291, 359, 696, 975, 1200
TspRI	CASTG	1 cut(s)	625
VpaK11BI	GGWCC	4 cut(s)	112, 471, 880, 944
XapI	RAATTY	4 cut(s)	21, 720, 761, 1202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	938
XspI	CTAG	2 cut(s)	381, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.