AT1G01170

Protein of unknown function (DUF1138)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002659
Physical Location & Seq
Reverse (-)
73931 .. 74737
807 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01170.2

Sequence Viewer

Length: 252 bp
ATGGCATCAGGAGGTAAAGCCAAGTACATAATCGGTGCTCTCATCGGTTCTTTCGGAATCTCATACATCTTCGACAAAGTTATCTCTGATAATAAGATCTTTGGAGGGACTACTCCAGGAACTGTCTCTAACAAAGAATGGTGGGCAGCAACGGATGAGAAATTCCAAGCATGGCCAAGAACCGCTGGTCCTCCCGTTGTTATGAATCCCATTAGCCGTCAGAATTTCATCGTCAAGACTCGTCCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1138

Protein Analysis

83

Amino Acids

9.06

Weight (kDa)

9.7

Isoelectric Point (pI)

18.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1138 PF06592 7 - 79 9.9e-44 Protein of unknown function (DUF1138)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 1 cut(s) 183
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 2 cut(s) 161, 223
AfaI GTAC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 115
AloI GAACNNNNNNTCC 2 cut(s) 172, 204
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 130
AlwNI CAGNNNCTG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 2 cut(s) 161, 223
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 130
BglII AGATCT 1 cut(s) 96
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 244
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 40
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 40
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 1 cut(s) 96
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 175
BspEI TCCGGA 1 cut(s) 244
BssMI GATC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 124
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 171
CviJI RGCY 3 cut(s) 20, 175, 216
CviKI_1 RGCY 3 cut(s) 20, 175, 216
CviQI GTAC 1 cut(s) 25
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 174
FaiI YATR 4 cut(s) 29, 64, 172, 203
FaqI GGGAC 1 cut(s) 121
FatI CATG 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 245
Hin1II CATG 1 cut(s) 174
HinfI GANTC 3 cut(s) 57, 205, 238
HpaII CCGG 1 cut(s) 245
Hpy188I TCNGA 3 cut(s) 56, 88, 222
Hpy188III TCNNGA 3 cut(s) 9, 235, 245
HpyCH4III ACNGT 1 cut(s) 124
Hsp92II CATG 1 cut(s) 174
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 3 cut(s) 102, 129, 171
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 14
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 1 cut(s) 61
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 40
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 2 cut(s) 161, 223
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 3 cut(s) 5, 98, 201
Mox20I TGGCCA 1 cut(s) 175
MroI TCCGGA 1 cut(s) 244
MscI TGGCCA 1 cut(s) 175
Msp20I TGGCCA 1 cut(s) 175
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
NdeII GATC 1 cut(s) 96
NlaIII CATG 1 cut(s) 174
PfeI GAWTC 2 cut(s) 57, 205
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspPI GGNCC 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 40
SetI ASST 1 cut(s) 16
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 1 cut(s) 188
Sse9I AATT 2 cut(s) 161, 223
SsiI CCGC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 72
TasI AATT 2 cut(s) 161, 223
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 2 cut(s) 57, 205
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 217, 218
TspGWI ACGGA 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 2 cut(s) 161, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.