Rroxscaffold_1G00028330

Protein of unknown function (DUF1138)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002659
Physical Location & Seq
Forward (+)
36081980 .. 36083314
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028330.1

Sequence Viewer

Length: 294 bp
ATGGCCTGCACAGAAACGTCTGTTTCTGTTGGTGTTAAGCCGTTAGGAATAAAAAGAAAAGGTAGAGTAAGGGACAGTTCAACGTACATTGAAAAATGTCGTGAAAGTACATCATCGGATCTCTCCTGGCAACCTTTGGACTTGCATATGTTTGTGACACCACTATTTCTGACAGAGATATTTGGAGGTGCCACTCCGGGAACTGTTTCAAACAAGGGATGGTGGGAAGAAACTGACAAGAAATTCCAGGCCTGGCCTCGCACTGCAGGACCTCGATCCTGTTGTCATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1138

Protein Analysis

97

Amino Acids

10.79

Weight (kDa)

8.8

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1138 PF06592 59 - 91 1e-15 Protein of unknown function (DUF1138)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AclWI GGATC 2 cut(s) 126, 270
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 2 cut(s) 86, 109
AgsI TTSAA 3 cut(s) 81, 92, 210
AjnI CCWGG 3 cut(s) 125, 246, 251
AlwI GGATC 2 cut(s) 126, 270
AoxI GGCC 3 cut(s) 3, 249, 254
ApoI RAATTY 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 198
AvaII GGWCC 1 cut(s) 269
BanI GGYRCC 1 cut(s) 188
BccI CCATC 1 cut(s) 213
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 3 cut(s) 127, 248, 253
BcnI CCSGG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 264
Bme1390I CCNGG 4 cut(s) 127, 198, 248, 253
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 4 cut(s) 127, 198, 248, 253
BpuMI CCSGG 1 cut(s) 198
BseBI CCWGG 3 cut(s) 127, 248, 253
BseGI GGATG 1 cut(s) 224
BshFI GGCC 3 cut(s) 5, 251, 256
BshNI GGYRCC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 3 cut(s) 5, 251, 256
Bsp143I GATC 2 cut(s) 118, 275
BspANI GGCC 3 cut(s) 5, 251, 256
BspLI GGNNCC 1 cut(s) 190
BspMAI CTGCAG 1 cut(s) 268
BspPI GGATC 2 cut(s) 126, 270
BspT107I GGYRCC 1 cut(s) 188
BssMI GATC 2 cut(s) 118, 275
Bst2UI CCWGG 3 cut(s) 127, 248, 253
Bst4CI ACNGT 2 cut(s) 77, 205
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 2 cut(s) 121, 278
BstMBI GATC 2 cut(s) 118, 275
BstNI CCWGG 3 cut(s) 127, 248, 253
BstSCI CCNGG 4 cut(s) 125, 196, 246, 251
BstSFI CTRYAG 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 3 cut(s) 5, 251, 256
BtsCI GGATG 1 cut(s) 224
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 85, 108
CviAII CATG 1 cut(s) 287
CviJI RGCY 4 cut(s) 5, 40, 251, 256
CviKI_1 RGCY 4 cut(s) 5, 40, 251, 256
CviQI GTAC 2 cut(s) 85, 108
DpnI GATC 2 cut(s) 120, 277
DpnII GATC 2 cut(s) 118, 275
Eco147I AGGCCT 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 3 cut(s) 125, 246, 251
EcoT22I ATGCAT 1 cut(s) 292
FaeI CATG 1 cut(s) 290
FaiI YATR 4 cut(s) 147, 149, 288, 292
FaqI GGGAC 1 cut(s) 86
FatI CATG 1 cut(s) 286
FauNDI CATATG 1 cut(s) 147
FokI GGATG 1 cut(s) 231
HaeIII GGCC 3 cut(s) 5, 251, 256
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 290
HpaII CCGG 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 118, 171
Hpy188III TCNNGA 1 cut(s) 101
HpyCH4III ACNGT 2 cut(s) 77, 205
HpyCH4IV ACGT 2 cut(s) 17, 83
HpyCH4V TGCA 4 cut(s) 9, 145, 266, 290
HpySE526I ACGT 2 cut(s) 17, 83
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 2 cut(s) 118, 275
LpnPI CCDG 9 cut(s) 19, 112, 139, 210, 233, 238, 252, 260, 265
MaeII ACGT 2 cut(s) 17, 83
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 120, 277
MboI GATC 2 cut(s) 118, 275
MboII GAAGA 1 cut(s) 239
MflI RGATCY 1 cut(s) 118
MluCI AATT 1 cut(s) 242
MnlI CCTC 3 cut(s) 179, 267, 282
Mph1103I ATGCAT 1 cut(s) 292
MroXI GAANNNNTTC 1 cut(s) 205
MseI TTAA 1 cut(s) 36
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 4 cut(s) 127, 198, 248, 253
MvaI CCWGG 3 cut(s) 127, 248, 253
NciI CCSGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 147
NdeII GATC 2 cut(s) 118, 275
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 292
PceI AGGCCT 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 3 cut(s) 125, 246, 251
PspGI CCWGG 3 cut(s) 125, 246, 251
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
PstI CTGCAG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 2 cut(s) 86, 109
RsaNI GTAC 2 cut(s) 85, 108
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 2 cut(s) 118, 275
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 4 cut(s) 127, 198, 248, 253
SetI ASST 6 cut(s) 20, 64, 86, 136, 190, 274
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 1 cut(s) 269
Sse9I AATT 1 cut(s) 242
SseBI AGGCCT 1 cut(s) 251
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 4 cut(s) 125, 196, 246, 251
TaaI ACNGT 2 cut(s) 77, 205
TaiI ACGT 2 cut(s) 20, 86
TaqI TCGA 1 cut(s) 274
TasI AATT 1 cut(s) 242
TatI WGTACW 1 cut(s) 107
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 205
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.