Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002659

Physical Location & Seq

Genomic Coordinates Forward (+)

28155471 .. 28157024

Gene Structure 1554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44697

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGCCACGCGAAATACATCTTTCCTGCTGTGTTGGGATCATTTGCAGTGGCATGGGCATTTGACCATTTTGTTGCTGACAAGAAGATATTTGGAGGAACTACTCCATCAACTGTTGCAAACAAAGAATGGTGGGAAGCAACTGACAAGAAGTTCCAGGCATGGCCTCGCACTGCCGGTCCTCCTGTGGTCATGAATCCCATCAGTCGTCAGAATTTCATTGTGAAGTCAGGCACCGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1138

Protein Analysis

81

Amino Acids

9.0

Weight (kDa)

9.16

Isoelectric Point (pI)

16.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1138	PF06592	4 - 76	6.3e-43	Protein of unknown function (DUF1138)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01170 AT1G01170 AT4G00860
fragaria_vesca	FvH4_3g28670 FvH4_5g27260 FvH4_6g23630 FvH4_6g23630
malus_domestica	MD12G1077000.v1.1
prunus_persica	Prupe.4G251500_v2.0.a1 Prupe.7G063200_v2.0.a1 Prupe.7G063200_v2.0.a1
pyrus_communis	pycom12g06270
rosa_chinensis	RchiOBHm_Chr3g0482031 RchiOBHm_Chr3g0482071 RchiOBHm_Chr5g0052401 RchiOBHm_Chr6g0302961
rosa_laevigata	RLG00000023378
rosa_multiflora	Rmu_sc0001738.1_g000025 Rmu_ssc0000460.1_g000022
rosa_roxburghii	Rroxscaffold_1G00028290 Rroxscaffold_1G00028330 Rroxscaffold_6G00399760 Rroxscaffold_7G00165130
rosa_rugosa	Rorug03G0194400 Rorug05G0272200 Rorug06G0318300
rosa_samantha	Rh3AG245700 Rh3BG280700 Rh3CG276900 Rh3DG273000 Rh5BG355800 Rh5CG381200 Rh5DG370900 Rh6AG432000 Rh6BG470600 Rh6CG444500 Rh6DG431200
rosa_wichuraiana	Rw3G021970 Rw5G032550 Rw6G037450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	1 cut(s)	11
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	156
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	2 cut(s)	4, 164
ApoI	RAATTY	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	4, 179
AvaII	GGWCC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	233
BccI	CCATC	2 cut(s)	115, 209
BciT130I	CCWGG	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	4, 179
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	6, 166
BshNI	GGYRCC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	177
BsnI	GGCC	2 cut(s)	6, 166
Bsp143I	GATC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	6, 166
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssMI	GATC	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	6, 166
BtsI	GCAGTG	2 cut(s)	54, 171
BtsIMutI	CAGTG	2 cut(s)	54, 171
CciI	TCATGA	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	4, 179
CviAII	CATG	3 cut(s)	54, 162, 193
CviJI	RGCY	2 cut(s)	6, 166
CviKI_1	RGCY	2 cut(s)	6, 166
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	3 cut(s)	57, 165, 196
FaiI	YATR	3 cut(s)	55, 163, 194
FatI	CATG	3 cut(s)	53, 161, 192
HaeIII	GGCC	2 cut(s)	6, 166
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	3 cut(s)	57, 165, 196
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	47, 119
Hsp92II	CATG	3 cut(s)	57, 165, 196
Kzo9I	GATC	1 cut(s)	38
LpnPI	CCDG	6 cut(s)	39, 143, 170, 190, 198, 216
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	1 cut(s)	97
MluCI	AATT	1 cut(s)	214
MnlI	CCTC	3 cut(s)	89, 177, 192
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	11
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	3 cut(s)	57, 165, 196
NlaIV	GGNNCC	1 cut(s)	235
PagI	TCATGA	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	4, 179
Sau3AI	GATC	1 cut(s)	38
Sau96I	GGNCC	2 cut(s)	4, 179
ScrFI	CCNGG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	196
TscAI	CASTG	2 cut(s)	54, 178
TspDTI	ATGAA	2 cut(s)	208, 209
TspRI	CASTG	2 cut(s)	54, 178
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.