RLG00000023378

Protein of unknown function (DUF1138)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002659
Physical Location & Seq
Reverse (-)
22772082 .. 22773664
1583 bp
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UTR
Exon/CDS
Intron
RLM00000023378

Sequence Viewer

Length: 405 bp
ATGGATATTAGGCTGGGTCCAGTTACCTCCGGAAAAAACAGAAAGGTGCCACGTTTTACTTGTGCGGACACCTTTTCTTCTTTTCAAAGCTTCTCTCTCATTATCTGTTCGCCAAGGAGGAGAAGAATCAAGACTTCCAGAGAGCTGCATTGTTTGAAGATGGGCCACGCGAAATACATCTTTCCTGCTGTGTTGGGATCATTTGCAGTGGCATGGGCATTTGACCATTTTGTTGCTGACAAGAAGATATTTGGAGGAACTACTCCATCAACTGTTGCAAACAAAGAATGGTCGGAAGCAACTGACAAGAAGTTCCAGGCATGGCCTCGCACTGCCGGTCCACCTGTGGTCATGAATCCCATCAGTCGTCAGAATTTCATTGTGAGGTCAGGCACCGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1138

Protein Analysis

135

Amino Acids

15.05

Weight (kDa)

10.24

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1138 PF06592 57 - 129 4.3e-41 Protein of unknown function (DUF1138)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 46, 392
AccII CGCG 1 cut(s) 170
AccIII TCCGGA 1 cut(s) 29
AciI CCGC 1 cut(s) 65
AclWI GGATC 1 cut(s) 205
AcsI RAATTY 1 cut(s) 373
AgsI TTSAA 2 cut(s) 86, 157
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 2 cut(s) 90, 145
AluI AGCT 2 cut(s) 90, 145
AlwI GGATC 1 cut(s) 205
Aor13HI TCCGGA 1 cut(s) 29
AoxI GGCC 2 cut(s) 163, 323
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 373
AspS9I GGNCC 3 cut(s) 17, 163, 338
AvaII GGWCC 2 cut(s) 17, 338
BanI GGYRCC 2 cut(s) 46, 392
BbvI GCAGC 1 cut(s) 132
BccI CCATC 3 cut(s) 154, 274, 368
BciT130I CCWGG 1 cut(s) 317
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 2 cut(s) 17, 338
BmgT120I GGNCC 3 cut(s) 17, 163, 338
BmiI GGNNCC 3 cut(s) 18, 48, 394
BmrFI CCNGG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 29
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 132
BseYI CCCAGC 1 cut(s) 13
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 2 cut(s) 165, 325
BshNI GGYRCC 2 cut(s) 46, 392
BsiSI CCGG 2 cut(s) 30, 336
BsnI GGCC 2 cut(s) 165, 325
Bsp13I TCCGGA 1 cut(s) 29
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 1 cut(s) 65
BspANI GGCC 2 cut(s) 165, 325
BspEI TCCGGA 1 cut(s) 29
BspFNI CGCG 1 cut(s) 170
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 3 cut(s) 18, 48, 394
BspPI GGATC 1 cut(s) 205
BspT107I GGYRCC 2 cut(s) 46, 392
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 274
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 315
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 132
BsuRI GGCC 2 cut(s) 165, 325
BtsI GCAGTG 2 cut(s) 213, 330
BtsIMutI CAGTG 2 cut(s) 213, 330
CciI TCATGA 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 3 cut(s) 17, 163, 338
CviAII CATG 3 cut(s) 213, 321, 352
CviJI RGCY 5 cut(s) 13, 90, 145, 165, 325
CviKI_1 RGCY 5 cut(s) 13, 90, 145, 165, 325
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 17, 338
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 3 cut(s) 216, 324, 355
FaiI YATR 3 cut(s) 214, 322, 353
FatI CATG 3 cut(s) 212, 320, 351
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 146
GsaI CCCAGC 1 cut(s) 17
HaeIII GGCC 2 cut(s) 165, 325
HapII CCGG 2 cut(s) 30, 336
Hin1II CATG 3 cut(s) 216, 324, 355
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 2 cut(s) 126, 355
HpaII CCGG 2 cut(s) 30, 336
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 295, 372
Hpy188III TCNNGA 4 cut(s) 30, 130, 138, 352
Hpy8I GTNNAC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 3 cut(s) 148, 206, 278
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 3 cut(s) 216, 324, 355
Kpn2I TCCGGA 1 cut(s) 29
Kzo9I GATC 1 cut(s) 197
LpnPI CCDG 9 cut(s) 33, 43, 151, 198, 302, 329, 349, 357, 375
Lsp1109I GCAGC 1 cut(s) 132
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 4 cut(s) 69, 135, 169, 256
MluCI AATT 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 5 cut(s) 37, 111, 248, 336, 378
MroI TCCGGA 1 cut(s) 29
MspI CCGG 2 cut(s) 30, 336
MspR9I CCNGG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 170
NdeII GATC 1 cut(s) 197
NlaIII CATG 3 cut(s) 216, 324, 355
NlaIV GGNNCC 3 cut(s) 18, 48, 394
PagI TCATGA 1 cut(s) 351
PfeI GAWTC 2 cut(s) 126, 355
PkrI GCNGC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 13
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 3 cut(s) 18, 48, 394
PspPI GGNCC 3 cut(s) 17, 163, 338
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 3 cut(s) 17, 163, 338
ScrFI CCNGG 1 cut(s) 317
SetI ASST 8 cut(s) 29, 48, 55, 74, 92, 147, 346, 389
SinI GGWCC 2 cut(s) 17, 338
Sse9I AATT 1 cut(s) 373
SsiI CCGC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 55
TasI AATT 1 cut(s) 373
TfiI GAWTC 2 cut(s) 126, 355
TscAI CASTG 2 cut(s) 213, 337
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 367, 368
TspRI CASTG 2 cut(s) 213, 337
VpaK11BI GGWCC 2 cut(s) 17, 338
XapI RAATTY 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.