AT4G00860

Protein of unknown function (DUF1138)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002659
Physical Location & Seq
Reverse (-)
359223 .. 360505
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00860.1

Sequence Viewer

Length: 243 bp
ATGTCGAGAGCTACATACATTATCGGTGCCCTTGCGGGATCTGCGGTAGTAGCTTACGTGTGTGACAAAGTTATTTCTGATGATAAGCTTTTTGGAGGTACTACACCAGGAACTATTACTAACAAGGAATGGGGTGCTGCGACTGAAGAGAGATTACAAGCATGGCCAAGAGTTGCTGGTCCTCCCGTCGTCATGAACCCTATCAGTCGCCAGAATTTCATCGTCAAGTCACGTCCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1138

Protein Analysis

80

Amino Acids

8.61

Weight (kDa)

8.98

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1138 PF06592 5 - 76 2e-41 Protein of unknown function (DUF1138)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 26
AciI CCGC 2 cut(s) 35, 44
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 57
AjiI CACGTC 1 cut(s) 233
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 3 cut(s) 11, 53, 88
AluI AGCT 3 cut(s) 11, 53, 88
AlwI GGATC 1 cut(s) 46
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 179
AvaII GGWCC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 31
BalI TGGCCA 1 cut(s) 166
BanI GGYRCC 1 cut(s) 26
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BbvI GCAGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 108
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 58
BseBI CCWGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 1 cut(s) 124
BshFI GGCC 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 26
BsnI GGCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 2 cut(s) 35, 44
BspANI GGCC 1 cut(s) 166
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 26
BssMI GATC 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 58
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 41, 50
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 1 cut(s) 166
BtrI CACGTC 1 cut(s) 233
CciI TCATGA 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 99
CviAII CATG 2 cut(s) 162, 193
CviJI RGCY 4 cut(s) 11, 53, 88, 166
CviKI_1 RGCY 4 cut(s) 11, 53, 88, 166
CviQI GTAC 1 cut(s) 99
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
EaeI YGGCCR 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 165, 196
FaiI YATR 3 cut(s) 16, 163, 194
FatI CATG 2 cut(s) 161, 192
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 1 cut(s) 166
Hin1II CATG 2 cut(s) 165, 196
HindIII AAGCTT 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 6, 193, 236
Hpy99I CGWCG 1 cut(s) 191
HpyCH4IV ACGT 2 cut(s) 57, 232
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 50
HpySE526I ACGT 2 cut(s) 57, 232
Hsp92II CATG 2 cut(s) 165, 196
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 93, 120, 162, 224
Lsp1109I GCAGC 1 cut(s) 124
MaeII ACGT 2 cut(s) 57, 232
MaeIII GTNAC 2 cut(s) 62, 228
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 158
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 31
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 1 cut(s) 214
MluNI TGGCCA 1 cut(s) 166
MnlI CCTC 2 cut(s) 89, 192
Mox20I TGGCCA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 166
Msp20I TGGCCA 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 41, 50
NdeII GATC 1 cut(s) 38
NlaIII CATG 2 cut(s) 165, 196
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 2 cut(s) 62, 228
PagI TCATGA 1 cut(s) 192
PkrI GCNGC 1 cut(s) 139
Ppu21I YACGTR 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 31
SetI ASST 6 cut(s) 13, 55, 60, 90, 100, 235
SinI GGWCC 1 cut(s) 179
Sse9I AATT 1 cut(s) 214
SsiI CCGC 2 cut(s) 35, 44
StyD4I CCNGG 1 cut(s) 106
TaiI ACGT 2 cut(s) 60, 235
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 214
TseFI GTSAC 2 cut(s) 62, 228
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 2 cut(s) 62, 228
TspDTI ATGAA 2 cut(s) 208, 209
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.