Rh3BG280700

Protein of unknown function (DUF1138)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002659
Physical Location & Seq
Forward (+)
27757833 .. 27762821
4989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG280700.1

Sequence Viewer

Length: 399 bp
ATGGGGTTTTGCAGCCCTTTGGATTCTATATTGTTCATTAGTATGCTTGTGAAGAATCAGAGACTCGAAGTTGCACGCCAAGTCTTCTCTCTCATCATCTGTTTGCCAAGGAGGAGAAGAATCAAGACTTCCAGAGAGCTCCATTGTTTGAAGATGGGCCACGCGAAATACATCTTTCCTGCTGTGTTGGGATCTTTTGCAGTGGCATGGGCATTTGACCATTTTGTTGCTGACAAGAAGATATTTGGAGGAACTACTCCATCAACTGTTGCAAACAAAGAATGGTGGGAAGCAACTGACAAGAAGTTCCAGGCATGGCCTCGCACTGCTGGTCCACCTGTGGTCATGAATCCCATCAGTCGTCAGAATTTCATTGTGAAGTCAGGCACCGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1138

Protein Analysis

132

Amino Acids

15.0

Weight (kDa)

9.96

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1138 PF06592 55 - 127 3e-42 Protein of unknown function (DUF1138)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 386
AccII CGCG 1 cut(s) 164
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 367
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 1 cut(s) 199
AoxI GGCC 2 cut(s) 157, 317
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 367
AspS9I GGNCC 2 cut(s) 157, 332
AvaII GGWCC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 24
BccI CCATC 3 cut(s) 148, 268, 362
BciT130I CCWGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 55
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 157, 332
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 159, 319
BshNI GGYRCC 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 2 cut(s) 159, 319
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 191
BspANI GGCC 2 cut(s) 159, 319
BspFNI CGCG 1 cut(s) 164
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 388
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 191
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 76
BstFNI CGCG 1 cut(s) 164
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 309
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 2 cut(s) 159, 319
BtsI GCAGTG 2 cut(s) 207, 324
BtsIMutI CAGTG 2 cut(s) 207, 324
Cac8I GCNNGC 1 cut(s) 76
CciI TCATGA 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 157, 332
CviAII CATG 3 cut(s) 207, 315, 346
CviJI RGCY 4 cut(s) 15, 139, 159, 319
CviKI_1 RGCY 4 cut(s) 15, 139, 159, 319
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 332
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 3 cut(s) 210, 318, 349
FaiI YATR 5 cut(s) 29, 44, 208, 316, 347
FatI CATG 3 cut(s) 206, 314, 345
Fnu4HI GCNGC 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 2 cut(s) 159, 319
Hin1II CATG 3 cut(s) 210, 318, 349
HinfI GANTC 5 cut(s) 23, 55, 63, 120, 349
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 2 cut(s) 60, 366
Hpy188III TCNNGA 3 cut(s) 124, 132, 346
Hpy8I GTNNAC 1 cut(s) 335
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 12, 74, 200, 272
Hsp92II CATG 3 cut(s) 210, 318, 349
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 7 cut(s) 145, 192, 296, 315, 323, 351, 369
Lsp1109I GCAGC 1 cut(s) 24
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 5 cut(s) 64, 76, 129, 163, 250
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 1 cut(s) 367
MlyI GAGTC 1 cut(s) 57
MnlI CCTC 3 cut(s) 105, 242, 330
MslI CAYNNNNRTG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 164
NdeII GATC 1 cut(s) 191
NlaIII CATG 3 cut(s) 210, 318, 349
NlaIV GGNNCC 1 cut(s) 388
PagI TCATGA 1 cut(s) 345
PfeI GAWTC 4 cut(s) 23, 55, 120, 349
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 2 cut(s) 157, 332
PsuI RGATCY 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 141
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 2 cut(s) 157, 332
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 141
SetI ASST 2 cut(s) 141, 340
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 1 cut(s) 367
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 367
TfiI GAWTC 4 cut(s) 23, 55, 120, 349
TscAI CASTG 2 cut(s) 207, 331
TseI GCWGC 1 cut(s) 12
TspDTI ATGAA 3 cut(s) 25, 361, 362
TspRI CASTG 2 cut(s) 207, 331
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.