Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Forward (+)

249041 .. 252522

Gene Structure 3482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGAAGATGAATATTAACAAAGCCTGCGATCTGAAATCTATTTCTGTCTTTCCTCCTAATTTAAGAAGGAGATCAGCAGAACCACAAGCATCTCAGCAGCTTCGATCTCAACAGTCACAGCAGTCCTTCTCTCAGGGACCTTCTTCGTCTCAGCGTGGTTGTGGTGGTTTTTCTCAGATGACTCAGAGTTCTATCGACGAACTCCTCATTAACGATCAGAGATTTAGTTCTCAGGAAAGAGATCTCTCTTTGAAGAAGGTTAGTAGTTGCTTACCTCCAATCAATCATAAACGAGAAGATAGTCAGTTGGTCGCTTCTAGATCTTCAAGTGGTCTTTCGAGAAGATGGAGTTCTGCTTCAATTGGAGAGTCTAAGTTAGCTCAGATCAGTGAAGAGCTTGAGCAACGGTTTGGGATGATGGAGACTTCTTTGAGCAGGTTTGGAATGATGTTGGATTCAATTCAGAGTGACATCATGCAAGCCAATCGAGGAACTAAAGAAGTATTTCTTGAAACTGAACGCATACAGCAAAAGTTGACTCTCCAAGACACTTCACTTCAGCAGCTGAGAAAGGAACAAGCCGATTCTAAAGCTAGTCTTGATGGAGGTGTTAAATTTATATTGGAGGAATTCAGCAAAGATCCCAATCAGGAGAAGCTACAGAAAATCTTACAGATGCTAACAACTATCCCAGAGCAAGTAGAAACCGCTCTGCAGAAAATACAAAGGGAAATCTGTCACACGTTCACCAGAGAGATTCAGGTCTTGGCTAGCTTGAGGACGCCTGAACCAAGGGTTCGGGTTCCAACAGCACCACAAGTGAAGGCTAAGGAAAACCTGCCTGAGCAGCGTGGTCAAGCGGCCAAGGTTTTGACTAGCTTGAAGATGCCTGAGCCAAGAGTTCAGGTTCCAGCAGCACCACAAGCTAAGGAAAACTTTCCTGAGCAGCGCGGTCCAGTAGCCAAGAGCAATTCCTTTTGTAATACTACACTGAAAACCAAACAACCACAATTTCCGAGAAATCCAAATGACGCCTCAGCCAGAGCTGTAAAACCATATTTATCCCCAAAGATACAAGTGGGATGTTGGAAGACGGTGAAACCAGAAAAAAGCAATTTCAAGAAAAGAGCAACAAGGAAGCCAGTGAAATCCGAAAGCACTCGTACGCAGTTTGAGCAATGCAGTGTTGTGATAGACTCCGATGAAGAAGATATTGATGGAGGTTTTTCATGCCTGATCAACGAGAACACCAGAGGAACTAACTTCGAATGGGACGCAGAGAAGGAAACTGAAAGGATTCTGAGGACAGCGAGGAGGACAAAGAGGAAGTTCGGTAACCCCATAATAATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

451

Amino Acids

50.99

Weight (kDa)

9.6

Isoelectric Point (pI)

68.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	426, 846
AccBSI	CCGCTC	1 cut(s)	710
AccII	CGCG	1 cut(s)	951
AciI	CCGC	3 cut(s)	708, 860, 951
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	861
AcsI	RAATTY	2 cut(s)	614, 629
AcuI	CTGAAG	1 cut(s)	542
AcyI	GRCGYC	2 cut(s)	782, 1032
AfaI	GTAC	1 cut(s)	1165
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	7 cut(s)	253, 327, 360, 459, 512, 883, 1120
Alw26I	GTCTC	2 cut(s)	153, 416
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	565
AoxI	GGCC	1 cut(s)	861
ApeKI	GCWGC	5 cut(s)	97, 562, 847, 914, 946
ApoI	RAATTY	2 cut(s)	614, 629
Asp700I	GAANNNNTTC	3 cut(s)	504, 936, 1296
AspLEI	GCGC	1 cut(s)	951
AspS9I	GGNCC	2 cut(s)	137, 953
AsuHPI	GGTGA	2 cut(s)	739, 1108
AsuII	TTCGAA	1 cut(s)	1266
AsuNHI	GCTAGC	1 cut(s)	770
AvaII	GGWCC	2 cut(s)	137, 953
BbsI	GAAGAC	1 cut(s)	1097
BbvCI	CCTCAGC	1 cut(s)	1036
BbvI	GCAGC	5 cut(s)	109, 574, 859, 926, 958
BccI	CCATC	4 cut(s)	339, 412, 596, 1211
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BclI	TGATCA	1 cut(s)	1236
BcoDI	GTCTC	2 cut(s)	153, 416
BfaI	CTAG	4 cut(s)	318, 594, 771, 876
BfmI	CTRYAG	2 cut(s)	659, 713
BfuAI	ACCTGC	2 cut(s)	426, 846
BglII	AGATCT	2 cut(s)	241, 320
BisI	GCNGC	6 cut(s)	98, 563, 848, 861, 915, 947
BlsI	GCNGC	6 cut(s)	99, 564, 849, 862, 916, 948
Bme18I	GGWCC	2 cut(s)	137, 953
BmgT120I	GGNCC	2 cut(s)	137, 953
BmiI	GGNNCC	3 cut(s)	138, 804, 909
BmsI	GCATC	3 cut(s)	98, 666, 876
BmtI	GCTAGC	1 cut(s)	774
BpiI	GAAGAC	1 cut(s)	1097
Bpu10I	CCTNAGC	6 cut(s)	828, 843, 891, 927, 942, 1036
Bpu14I	TTCGAA	1 cut(s)	1266
BpuEI	CTTGAG	2 cut(s)	419, 796
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	2 cut(s)	782, 1032
BsaJI	CCNNGG	2 cut(s)	791, 864
Bse1I	ACTGG	2 cut(s)	956, 1142
Bse3DI	GCAATG	1 cut(s)	1184
Bse8I	GATNNNNATC	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	791, 864
BseGI	GGATG	2 cut(s)	420, 1088
BseJI	GATNNNNATC	1 cut(s)	645
BseMI	GCAATG	1 cut(s)	1184
BseNI	ACTGG	2 cut(s)	956, 1142
BseRI	GAGGAG	2 cut(s)	194, 1327
BseXI	GCAGC	5 cut(s)	109, 574, 859, 926, 958
Bsh1236I	CGCG	1 cut(s)	951
BshFI	GGCC	1 cut(s)	863
BsiWI	CGTACG	1 cut(s)	1163
BslFI	GGGAC	2 cut(s)	150, 1286
BsmAI	GTCTC	2 cut(s)	153, 416
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	2 cut(s)	150, 1286
BsnI	GGCC	1 cut(s)	863
Bsp119I	TTCGAA	1 cut(s)	1266
Bsp143I	GATC	9 cut(s)	28, 71, 104, 214, 241, 320, 384, 640, 1236
BspACI	CCGC	3 cut(s)	708, 860, 951
BspANI	GGCC	1 cut(s)	863
BspFNI	CGCG	1 cut(s)	951
BspLI	GGNNCC	3 cut(s)	138, 804, 909
BspMAI	CTGCAG	1 cut(s)	717
BspMI	ACCTGC	2 cut(s)	426, 846
BspOI	GCTAGC	1 cut(s)	774
BspPI	GGATC	1 cut(s)	635
BspQI	GCTCTTC	1 cut(s)	387
BspT104I	TTCGAA	1 cut(s)	1266
BsrBI	CCGCTC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	1184
BsrI	ACTGG	2 cut(s)	956, 1142
BssECI	CCNNGG	2 cut(s)	791, 864
BssMI	GATC	9 cut(s)	28, 71, 104, 214, 241, 320, 384, 640, 1236
BssNI	GRCGYC	2 cut(s)	782, 1032
BssT1I	CCWWGG	2 cut(s)	791, 864
Bst4CI	ACNGT	3 cut(s)	114, 408, 1096
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	2 cut(s)	782, 1032
BstBI	TTCGAA	1 cut(s)	1266
BstC8I	GCNNGC	3 cut(s)	25, 480, 772
BstEII	GGTNACC	1 cut(s)	1334
BstF5I	GGATG	2 cut(s)	420, 1088
BstFNI	CGCG	1 cut(s)	951
BstHHI	GCGC	1 cut(s)	951
BstKTI	GATC	9 cut(s)	31, 74, 107, 217, 244, 323, 387, 643, 1239
BstMAI	GTCTC	2 cut(s)	153, 416
BstMBI	GATC	9 cut(s)	28, 71, 104, 214, 241, 320, 384, 640, 1236
BstMWI	GCNNNNNNNGC	3 cut(s)	847, 923, 1174
BstPI	GGTNACC	1 cut(s)	1334
BstSFI	CTRYAG	2 cut(s)	659, 713
BstUI	CGCG	1 cut(s)	951
BstV1I	GCAGC	5 cut(s)	109, 574, 859, 926, 958
BstV2I	GAAGAC	1 cut(s)	1097
BstX2I	RGATCY	3 cut(s)	241, 320, 640
BstYI	RGATCY	3 cut(s)	241, 320, 640
BsuRI	GGCC	1 cut(s)	863
BtsCI	GGATG	2 cut(s)	420, 1088
BtsI	GCAGTG	1 cut(s)	1189
BtsIMutI	CAGTG	4 cut(s)	394, 989, 1149, 1189
BveI	ACCTGC	2 cut(s)	426, 846
Cac8I	GCNNGC	3 cut(s)	25, 480, 772
CaiI	CAGNNNCTG	1 cut(s)	565
CfoI	GCGC	1 cut(s)	951
Cfr13I	GGNCC	2 cut(s)	137, 953
CseI	GACGC	3 cut(s)	790, 1040, 1283
Csp6I	GTAC	1 cut(s)	1164
CviAII	CATG	2 cut(s)	475, 1230
CviQI	GTAC	1 cut(s)	1164
DpnI	GATC	9 cut(s)	30, 73, 106, 216, 243, 322, 386, 642, 1238
DpnII	GATC	9 cut(s)	28, 71, 104, 214, 241, 320, 384, 640, 1236
EaeI	YGGCCR	1 cut(s)	861
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	791, 864
Eco47I	GGWCC	2 cut(s)	137, 953
Eco57I	CTGAAG	1 cut(s)	542
Eco91I	GGTNACC	1 cut(s)	1334
EcoO109I	RGGNCCY	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	1334
EcoRI	GAATTC	1 cut(s)	629
EcoT14I	CCWWGG	2 cut(s)	791, 864
ErhI	CCWWGG	2 cut(s)	791, 864
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	2 cut(s)	478, 1233
FaiI	YATR	7 cut(s)	288, 476, 524, 620, 1057, 1231, 1343
FalI	AAGNNNNNCTT	6 cut(s)	492, 524, 582, 614, 920, 952
FaqI	GGGAC	2 cut(s)	150, 1286
FatI	CATG	2 cut(s)	474, 1229
FbaI	TGATCA	1 cut(s)	1236
Fnu4HI	GCNGC	6 cut(s)	98, 563, 848, 861, 915, 947
FokI	GGATG	2 cut(s)	427, 1095
Fsp4HI	GCNGC	6 cut(s)	98, 563, 848, 861, 915, 947
FspBI	CTAG	4 cut(s)	318, 594, 771, 876
GlaI	GCGC	1 cut(s)	950
GluI	GCNGC	6 cut(s)	98, 563, 848, 861, 915, 947
HaeIII	GGCC	1 cut(s)	863
HgaI	GACGC	3 cut(s)	790, 1040, 1283
HhaI	GCGC	1 cut(s)	951
Hin1I	GRCGYC	2 cut(s)	782, 1032
Hin1II	CATG	2 cut(s)	478, 1233
Hin6I	GCGC	1 cut(s)	949
HinP1I	GCGC	1 cut(s)	949
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	8 cut(s)	181, 368, 455, 538, 584, 757, 1196, 1297
HphI	GGTGA	2 cut(s)	739, 1108
Hpy166II	GTNNAC	2 cut(s)	537, 747
Hpy188III	TCNNGA	8 cut(s)	233, 318, 339, 509, 599, 650, 941, 1120
Hpy8I	GTNNAC	2 cut(s)	537, 747
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	6 cut(s)	60, 136, 150, 250, 817, 1276
HpyCH4III	ACNGT	3 cut(s)	114, 408, 1096
HpyCH4IV	ACGT	1 cut(s)	743
HpyCH4V	TGCA	3 cut(s)	478, 715, 1182
HpyF10VI	GCNNNNNNNGC	3 cut(s)	847, 923, 1174
HpySE526I	ACGT	1 cut(s)	743
Hsp92I	GRCGYC	2 cut(s)	782, 1032
Hsp92II	CATG	2 cut(s)	478, 1233
HspAI	GCGC	1 cut(s)	949
Ksp22I	TGATCA	1 cut(s)	1236
Kzo9I	GATC	9 cut(s)	28, 71, 104, 214, 241, 320, 384, 640, 1236
LguI	GCTCTTC	1 cut(s)	387
Lsp1109I	GCAGC	5 cut(s)	109, 574, 859, 926, 958
LweI	GCATC	3 cut(s)	98, 666, 876
MaeI	CTAG	4 cut(s)	318, 594, 771, 876
MaeII	ACGT	1 cut(s)	743
MaeIII	GTNAC	4 cut(s)	114, 467, 737, 1334
MalI	GATC	9 cut(s)	30, 73, 106, 216, 243, 322, 386, 642, 1238
MbiI	CCGCTC	1 cut(s)	710
MboI	GATC	9 cut(s)	28, 71, 104, 214, 241, 320, 384, 640, 1236
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	3 cut(s)	241, 320, 640
MluCI	AATT	9 cut(s)	58, 360, 459, 614, 629, 970, 1010, 1114, 1347
MlyI	GAGTC	4 cut(s)	175, 377, 532, 1190
MmeI	TCCRAC	3 cut(s)	432, 830, 1067
MroXI	GAANNNNTTC	3 cut(s)	504, 936, 1296
MseI	TTAA	5 cut(s)	15, 62, 210, 612, 1350
MspA1I	CMGCKG	1 cut(s)	565
MunI	CAATTG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	951
MwoI	GCNNNNNNNGC	3 cut(s)	847, 923, 1174
NdeII	GATC	9 cut(s)	28, 71, 104, 214, 241, 320, 384, 640, 1236
NheI	GCTAGC	1 cut(s)	770
NlaIII	CATG	2 cut(s)	478, 1233
NlaIV	GGNNCC	3 cut(s)	138, 804, 909
NmuCI	GTSAC	3 cut(s)	114, 467, 737
NspV	TTCGAA	1 cut(s)	1266
PciSI	GCTCTTC	1 cut(s)	387
PdmI	GAANNNNTTC	3 cut(s)	504, 936, 1296
PfeI	GAWTC	4 cut(s)	455, 584, 757, 1297
Pfl23II	CGTACG	1 cut(s)	1163
PkrI	GCNGC	6 cut(s)	99, 564, 849, 862, 916, 948
PleI	GAGTC	4 cut(s)	175, 376, 532, 1190
PpsI	GAGTC	4 cut(s)	175, 376, 532, 1190
PpuMI	RGGWCCY	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	1334
PspLI	CGTACG	1 cut(s)	1163
PspN4I	GGNNCC	3 cut(s)	138, 804, 909
PspPI	GGNCC	2 cut(s)	137, 953
PspPPI	RGGWCCY	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	717
PstNI	CAGNNNCTG	1 cut(s)	565
PsuI	RGATCY	3 cut(s)	241, 320, 640
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	1 cut(s)	1165
RsaNI	GTAC	1 cut(s)	1164
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	5 cut(s)	15, 62, 210, 612, 1350
SatI	GCNGC	6 cut(s)	98, 563, 848, 861, 915, 947
Sau3AI	GATC	9 cut(s)	28, 71, 104, 214, 241, 320, 384, 640, 1236
Sau96I	GGNCC	2 cut(s)	137, 953
SchI	GAGTC	4 cut(s)	175, 377, 532, 1190
SfaNI	GCATC	3 cut(s)	98, 666, 876
SfcI	CTRYAG	2 cut(s)	659, 713
SfuI	TTCGAA	1 cut(s)	1266
SinI	GGWCC	2 cut(s)	137, 953
SmlI	CTYRAG	2 cut(s)	398, 775
SmoI	CTYRAG	2 cut(s)	398, 775
Sse9I	AATT	9 cut(s)	58, 360, 459, 614, 629, 970, 1010, 1114, 1347
SsiI	CCGC	3 cut(s)	708, 860, 951
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	4 cut(s)	318, 594, 771, 876
StyI	CCWWGG	2 cut(s)	791, 864
TaaI	ACNGT	3 cut(s)	114, 408, 1096
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	5 cut(s)	103, 195, 338, 487, 1266
TasI	AATT	9 cut(s)	58, 360, 459, 614, 629, 970, 1010, 1114, 1347
TauI	GCSGC	1 cut(s)	863
TfiI	GAWTC	4 cut(s)	455, 584, 757, 1297
Tru1I	TTAA	5 cut(s)	15, 62, 210, 612, 1350
Tru9I	TTAA	5 cut(s)	15, 62, 210, 612, 1350
TscAI	CASTG	4 cut(s)	394, 996, 1149, 1189
TseFI	GTSAC	3 cut(s)	114, 467, 737
TseI	GCWGC	5 cut(s)	97, 562, 847, 914, 946
Tsp45I	GTSAC	3 cut(s)	114, 467, 737
TspDTI	ATGAA	4 cut(s)	17, 23, 1218, 1218
TspRI	CASTG	4 cut(s)	394, 996, 1149, 1189
VpaK11BI	GGWCC	2 cut(s)	137, 953
XapI	RAATTY	2 cut(s)	614, 629
XbaI	TCTAGA	1 cut(s)	317
XmnI	GAANNNNTTC	3 cut(s)	504, 936, 1296
XspI	CTAG	4 cut(s)	318, 594, 771, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.