Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Forward (+)

19944114 .. 19948361

Gene Structure 4248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1136800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAAGTTGAAGATCAACAAGGTCTGTGATCTCAGCTCCATCTCCGTCCTTCCTCCTCACACAAGGAGACCAAATGCTGTACCAAATGGACAAGCATCACAGTTTCGATCTCAACCATCAGACCAGTCATACTCTCAGGGACTCTCATCTCAGCATAACATGTTTTCTCAACTGTCTCAGAACTCCCAATGTGACGTTCTCACAAACGATCAGAGGTTTGGGTCTCAAGAACGAGCGAATTCTGCTAAGAAAGTTGCTTACTTACCCCTAAGTAGTCATGCACGTGATGAGAGTCAAGTGCAGATCTCAAGATCTTCCACCAACCTCATGCGCAAGTGGAGTTCCGCTTCTGTTTTAGATCATCAATGTCTGAATAGTGAGGAATTTGAACACCGGATTGGAGTGATGGAAACTTCATTAAATAAGTTTGGAATGATCTTGGATTCTGTCCAGAGTGATGTCATGCAAGTAAACAAGGGGATGAAGGATGTTTCTATGGAGATGGAAGTAGTGCGGCAGAAGTTGATGGCTCAGGATCACTTATTGCAGTTAATGATTAAGGGGCAAGAAGATTTCAAAACTAGCCTTGACGGAGGCATCAAGTCTATTTCTGAAGAAGTGAGCAAAATTACCTATCAAGACAAATTACAGGAGATTTCCTTGGCGCTTTCAGCCTTACCAGAAAAGATAGGTGTCACTGAAGCAACTTTACTGAAATCACAAAACAAGCTGCACGAATCCTTCGTCAAGGAAATGCAGAAATTTCCTTGCAGCCAGAATCAGAGTACCTCCATTAAAATATGTGAAGCACCCTCTATAATTCCTCCAAAGGGTGCTGCCTATTGTGCCATTGCACAAGGAAATTCACAGCCTATTAAAAGTGTTTGGCCCTCTGGGAAATTTAAAAAGCCTCGTCTTGATTCCAGTTCAGCTGTGCCTCCGAAGGTTGGTGTACAAGCAGTTGTAGTTCCAAAGATTGAAACAGGAGGCTGGAACTCTGTTAAGGTAAAAAGATCCACCGTGAGTGATAATGGGTTGCAGAAAGTACAAAAGCCTAGCAGATTTACTTCCATTCAACAGGAGAGAGAATGCCGAGTTATCATTGAATCAGATGAGGAGATTGATGAAGCTTTTTCCTGCTTGTTTGGTGAGAAGGAAACAGGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

43.11

Weight (kDa)

8.65

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
AciI	CCGC	2 cut(s)	345, 514
AclWI	GGATC	2 cut(s)	543, 1008
AcsI	RAATTY	5 cut(s)	238, 383, 761, 862, 899
AcuI	CTGAAG	2 cut(s)	633, 720
AcvI	CACGTG	1 cut(s)	284
AfaI	GTAC	4 cut(s)	81, 787, 954, 1047
AfiI	CCNNNNNNNGG	2 cut(s)	830, 947
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	6 cut(s)	10, 389, 577, 980, 1076, 1106
AjuI	GAANNNNNNNTTGG	4 cut(s)	180, 212, 381, 413
AluBI	AGCT	4 cut(s)	36, 730, 932, 1130
AluI	AGCT	4 cut(s)	36, 730, 932, 1130
Alw26I	GTCTC	3 cut(s)	61, 180, 228
AlwI	GGATC	2 cut(s)	543, 1008
AoxI	GGCC	1 cut(s)	887
ApeKI	GCWGC	3 cut(s)	730, 771, 836
ApoI	RAATTY	5 cut(s)	238, 383, 761, 862, 899
ArsI	GACNNNNNNTTYG	2 cut(s)	729, 761
AspLEI	GCGC	2 cut(s)	333, 667
AspS9I	GGNCC	1 cut(s)	888
AsuHPI	GGTGA	1 cut(s)	1160
BarI	GAAGNNNNNNTAC	2 cut(s)	693, 725
BbrPI	CACGTG	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	717, 783, 823
BccI	CCATC	5 cut(s)	47, 124, 400, 496, 520
BcoDI	GTCTC	3 cut(s)	61, 180, 228
BfaI	CTAG	2 cut(s)	582, 1056
BfoI	RGCGCY	1 cut(s)	668
BglII	AGATCT	2 cut(s)	303, 311
BisI	GCNGC	4 cut(s)	515, 731, 772, 837
BlsI	GCNGC	4 cut(s)	516, 732, 773, 838
BmgT120I	GGNCC	1 cut(s)	888
BmsI	GCATC	2 cut(s)	104, 606
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	210, 292
BsaAI	YACGTR	1 cut(s)	284
BsaI	GGTCTC	2 cut(s)	61, 228
BsaJI	CCNNGG	1 cut(s)	660
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	2 cut(s)	830, 947
Bse1I	ACTGG	2 cut(s)	124, 924
Bse3DI	GCAATG	1 cut(s)	849
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	486, 493
BseLI	CCNNNNNNNGG	2 cut(s)	830, 947
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	5 cut(s)	46, 149, 164, 191, 545
BseNI	ACTGG	2 cut(s)	124, 924
BseRI	GAGGAG	2 cut(s)	45, 1130
BseXI	GCAGC	3 cut(s)	717, 783, 823
BsgI	GTGCAG	2 cut(s)	320, 716
BshFI	GGCC	1 cut(s)	889
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	830, 947
BsmAI	GTCTC	3 cut(s)	61, 180, 228
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	1094
BsnI	GGCC	1 cut(s)	889
Bso31I	GGTCTC	2 cut(s)	61, 228
Bsp1407I	TGTACA	1 cut(s)	952
BspACI	CCGC	2 cut(s)	345, 514
BspANI	GGCC	1 cut(s)	889
BspCNI	CTCAG	5 cut(s)	45, 148, 163, 190, 544
BspPI	GGATC	2 cut(s)	543, 1008
BspTNI	GGTCTC	2 cut(s)	61, 228
BsrDI	GCAATG	1 cut(s)	849
BsrGI	TGTACA	1 cut(s)	952
BsrI	ACTGG	2 cut(s)	124, 924
BssECI	CCNNGG	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	660
Bst4CI	ACNGT	3 cut(s)	102, 174, 1021
BstAUI	TGTACA	1 cut(s)	952
BstBAI	YACGTR	1 cut(s)	284
BstDEI	CTNAG	7 cut(s)	32, 135, 150, 177, 246, 269, 531
BstF5I	GGATG	2 cut(s)	486, 493
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	2 cut(s)	333, 667
BstMAI	GTCTC	3 cut(s)	61, 180, 228
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 671, 845
BstNSI	RCATGY	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	717, 783, 823
BstX2I	RGATCY	4 cut(s)	303, 311, 1013, 1163
BstYI	RGATCY	4 cut(s)	303, 311, 1013, 1163
BsuRI	GGCC	1 cut(s)	889
BtsCI	GGATG	2 cut(s)	486, 493
BtsIMutI	CAGTG	1 cut(s)	696
CfoI	GCGC	2 cut(s)	333, 667
Cfr13I	GGNCC	1 cut(s)	888
Csp6I	GTAC	4 cut(s)	80, 786, 953, 1046
CviAII	CATG	4 cut(s)	160, 278, 328, 463
CviQI	GTAC	4 cut(s)	80, 786, 953, 1046
DdeI	CTNAG	7 cut(s)	32, 135, 150, 177, 246, 269, 531
DraI	TTTAAA	1 cut(s)	904
Eco130I	CCWWGG	1 cut(s)	660
Eco31I	GGTCTC	2 cut(s)	61, 228
Eco57I	CTGAAG	2 cut(s)	633, 720
Eco72I	CACGTG	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	4 cut(s)	163, 281, 331, 466
FaiI	YATR	9 cut(s)	130, 156, 161, 279, 329, 464, 497, 802, 818
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	4 cut(s)	159, 277, 327, 462
Fnu4HI	GCNGC	4 cut(s)	515, 731, 772, 837
FokI	GGATG	2 cut(s)	493, 500
Fsp4HI	GCNGC	4 cut(s)	515, 731, 772, 837
FspBI	CTAG	2 cut(s)	582, 1056
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	2 cut(s)	332, 666
GluI	GCNGC	4 cut(s)	515, 731, 772, 837
HaeII	RGCGCY	1 cut(s)	668
HaeIII	GGCC	1 cut(s)	889
HapII	CCGG	1 cut(s)	394
HhaI	GCGC	2 cut(s)	333, 667
Hin1II	CATG	4 cut(s)	163, 281, 331, 466
Hin6I	GCGC	2 cut(s)	331, 665
HinP1I	GCGC	2 cut(s)	331, 665
HindIII	AAGCTT	1 cut(s)	1128
HinfI	GANTC	7 cut(s)	141, 292, 443, 737, 778, 920, 1106
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	1 cut(s)	1160
Hpy166II	GTNNAC	2 cut(s)	472, 953
Hpy188I	TCNGA	8 cut(s)	121, 180, 213, 372, 613, 783, 942, 1111
Hpy188III	TCNNGA	7 cut(s)	227, 309, 451, 533, 638, 917, 1167
Hpy8I	GTNNAC	2 cut(s)	472, 953
HpyAV	CCTTC	5 cut(s)	59, 478, 751, 937, 1147
HpyCH4III	ACNGT	3 cut(s)	102, 174, 1021
HpyCH4IV	ACGT	2 cut(s)	195, 283
HpyCH4V	TGCA	9 cut(s)	281, 301, 466, 547, 733, 757, 771, 854, 1039
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 671, 845
HpyF3I	CTNAG	7 cut(s)	32, 135, 150, 177, 246, 269, 531
HpySE526I	ACGT	2 cut(s)	195, 283
Hsp92II	CATG	4 cut(s)	163, 281, 331, 466
HspAI	GCGC	2 cut(s)	331, 665
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	3 cut(s)	717, 783, 823
LweI	GCATC	2 cut(s)	104, 606
MaeI	CTAG	2 cut(s)	582, 1056
MaeII	ACGT	2 cut(s)	195, 283
MaeIII	GTNAC	2 cut(s)	191, 694
MboII	GAAGA	4 cut(s)	22, 306, 581, 626
MflI	RGATCY	4 cut(s)	303, 311, 1013, 1163
MluCI	AATT	8 cut(s)	238, 383, 627, 644, 761, 819, 862, 899
MlyI	GAGTC	2 cut(s)	135, 301
MseI	TTAA	7 cut(s)	419, 551, 558, 795, 876, 903, 1002
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	932
MspI	CCGG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	1094
MwoI	GCNNNNNNNGC	3 cut(s)	242, 671, 845
NlaIII	CATG	4 cut(s)	163, 281, 331, 466
NmeAIII	GCCGAG	1 cut(s)	1118
NmuCI	GTSAC	2 cut(s)	191, 694
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PctI	GAATGC	1 cut(s)	1094
PfeI	GAWTC	5 cut(s)	443, 737, 778, 920, 1106
PkrI	GCNGC	4 cut(s)	516, 732, 773, 838
PleI	GAGTC	2 cut(s)	135, 300
PmaCI	CACGTG	1 cut(s)	284
PmlI	CACGTG	1 cut(s)	284
PpsI	GAGTC	2 cut(s)	135, 300
Ppu21I	YACGTR	1 cut(s)	284
PscI	ACATGT	1 cut(s)	159
PspCI	CACGTG	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	888
PsuI	RGATCY	4 cut(s)	303, 311, 1013, 1163
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	4 cut(s)	81, 787, 954, 1047
RsaNI	GTAC	4 cut(s)	80, 786, 953, 1046
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	7 cut(s)	419, 551, 558, 795, 876, 903, 1002
SatI	GCNGC	4 cut(s)	515, 731, 772, 837
Sau96I	GGNCC	1 cut(s)	888
SchI	GAGTC	2 cut(s)	135, 301
SfaNI	GCATC	2 cut(s)	104, 606
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	225, 307
SmoI	CTYRAG	2 cut(s)	225, 307
Sse9I	AATT	8 cut(s)	238, 383, 627, 644, 761, 819, 862, 899
SsiI	CCGC	2 cut(s)	345, 514
SspMI	CTAG	2 cut(s)	582, 1056
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	3 cut(s)	102, 174, 1021
TaiI	ACGT	2 cut(s)	198, 286
TaqI	TCGA	1 cut(s)	106
TasI	AATT	8 cut(s)	238, 383, 627, 644, 761, 819, 862, 899
TatI	WGTACW	2 cut(s)	952, 1045
TauI	GCSGC	1 cut(s)	517
TfiI	GAWTC	5 cut(s)	443, 737, 778, 920, 1106
Tru1I	TTAA	7 cut(s)	419, 551, 558, 795, 876, 903, 1002
Tru9I	TTAA	7 cut(s)	419, 551, 558, 795, 876, 903, 1002
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	2 cut(s)	191, 694
TseI	GCWGC	3 cut(s)	730, 771, 836
Tsp45I	GTSAC	2 cut(s)	191, 694
TspDTI	ATGAA	4 cut(s)	17, 405, 497, 1140
TspGWI	ACGGA	2 cut(s)	34, 606
TspRI	CASTG	1 cut(s)	703
XapI	RAATTY	5 cut(s)	238, 383, 761, 862, 899
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	2 cut(s)	582, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.