Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Reverse (-)

46956680 .. 46961534

Gene Structure 4855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG256100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAAGTTGAAGATCAACAAGGCCTGCGATCTCAGCTCCATCTCCGTCCTTCCTCCTCACAACAGGAGATCAAATTCTGTTTCACATGGACCACAAGGTTCGCAGCTTCAGCTTCGATCTCAACCATCAGAGCAGTCATTTTCTCAGGGACTCTCATCTCAGTATGGCATGTTTTCTCAGCTCTCTCAGACGCCTCTTGACGCTTTTACAGATCAGAGGTCTCAAGAACGGGAGAACTCTGTGAAGAAGATTGCTCGCTTACCCCTAATTAGTCATGCCCGTGAAGAGAGTCAAATGCAGATTTCAAGACCTTCCAACAGTCTCATGCGCAAATGGAGTTCTGCTTCTGGTTCAGATCATCGATTGGAAGCAGTACAGCAGAAGTTGATGGTTCAAGACAGCTTGCTGCAGTTAATAAATAAGGGGCAAGAAGATTTCAAAGCTAGCCTTGATGCGGGCATCAAATCTATGTCGGAGCAACTGAGCAAAAATGAAAATCAAGATAAATTACAGGAGATGTTCTTAGTGCTTTCAGCCTTACCAGAAAAGATTGAAGCATCCCTCCTGAGTTCACAAAATAATTTACACAGCTCCTTCATCAAGGAAATGCAGAAACTGCTTTGCGGTATCCAAACATGCCAGAATCAGATTACGTACCCCATCCAAACATCCAAAGTGCTATCTGTAGTTTCACCAAAGGCACCAAAGGCTGCTGCCATTCCTGCTATTCCACAAGTAGAGCAAAAGCCTAAGAGGACGTATGTGAGAAAGTATGTGAGAAAGTACAAAGCACCCTCTTTACCTTCATCAAAGGGCGCTGCCTGTCACTCTGTTCCAGAAAAAAGGCCACAGCCTATTAAGAAAGAGTTCGAGAGGCTTAAAAACCCTGCTCTCGATTCCCACTCAACTGTACCTCCAAAGGTTTCTGTTCAAGCAGCTGTAGTTACAACAACAGAAACAGGAGGCTGGAAGACTGTAAAGGCGGGAAAAGCTACCTCTATTGATAGGGTGCCCCAGAAAGCACAAAAACATAATGGAATTACCTTGGTTAAACAGGAAAGAGGAGGTAGAATTATCATTGAATCAGACGAGGACATTGATGGAGGATTTTCATTCTTACTTGACGAGAAAGAAACAGACATAAAAAACTATATGATTGAAGAGGTAGACCAAGAGACAGAACGGATTTTGAGGAGGGCAAGGAGGCGAAAGAGAAGATGCTGTAACCCTATAATTATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

414

Amino Acids

46.41

Weight (kDa)

9.71

Isoelectric Point (pI)

63.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	329
AccB1I	GGYRCC	2 cut(s)	700, 1009
AccI	GTMKAC	1 cut(s)	1167
AciI	CCGC	3 cut(s)	455, 624, 983
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	4 cut(s)	375, 656, 785, 912
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	8 cut(s)	10, 306, 395, 439, 554, 932, 1082, 1160
AluBI	AGCT	9 cut(s)	36, 106, 112, 181, 402, 443, 591, 938, 992
AluI	AGCT	9 cut(s)	36, 106, 112, 181, 402, 443, 591, 938, 992
Alw26I	GTCTC	3 cut(s)	225, 326, 1169
AlwNI	CAGNNNCTG	1 cut(s)	616
AoxI	GGCC	2 cut(s)	21, 845
ApeKI	GCWGC	6 cut(s)	103, 406, 710, 713, 818, 935
ApoI	RAATTY	1 cut(s)	73
Asp700I	GAANNNNTTC	1 cut(s)	866
AspLEI	GCGC	2 cut(s)	330, 818
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	684
AsuNHI	GCTAGC	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	1014
BanI	GGYRCC	2 cut(s)	700, 1009
BbsI	GAAGAC	1 cut(s)	977
BbvI	GCAGC	6 cut(s)	115, 393, 697, 700, 805, 947
BccI	CCATC	5 cut(s)	47, 133, 382, 668, 1094
BciVI	GTATCC	1 cut(s)	638
BcoDI	GTCTC	3 cut(s)	225, 326, 1169
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	3 cut(s)	407, 684, 939
BfoI	RGCGCY	1 cut(s)	819
BfuI	GTATCC	1 cut(s)	638
BisI	GCNGC	6 cut(s)	104, 407, 711, 714, 819, 936
BlsI	GCNGC	6 cut(s)	105, 408, 712, 715, 820, 937
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	702, 1011
BmsI	GCATC	4 cut(s)	442, 468, 566, 1208
BmtI	GCTAGC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	977
BpuEI	CTTGAG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	361
BsaAI	YACGTR	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	1044
BsaXI	ACNNNNNCTCC	2 cut(s)	898, 928
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	1044
BseGI	GGATG	3 cut(s)	557, 660, 668
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	7 cut(s)	46, 158, 173, 191, 200, 473, 557
BseRI	GAGGAG	3 cut(s)	45, 1077, 1207
BseSI	GKGCMC	1 cut(s)	1014
BseXI	GCAGC	6 cut(s)	115, 393, 697, 700, 805, 947
BshFI	GGCC	2 cut(s)	23, 847
BshNI	GGYRCC	2 cut(s)	700, 1009
BshVI	ATCGAT	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	3 cut(s)	225, 326, 1169
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	23, 847
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	1014
Bsp143I	GATC	6 cut(s)	12, 28, 68, 116, 211, 355
BspACI	CCGC	3 cut(s)	455, 624, 983
BspANI	GGCC	2 cut(s)	23, 847
BspCNI	CTCAG	7 cut(s)	45, 157, 172, 190, 199, 474, 558
BspDI	ATCGAT	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	702, 1011
BspMAI	CTGCAG	1 cut(s)	411
BspOI	GCTAGC	1 cut(s)	447
BspT107I	GGYRCC	2 cut(s)	700, 1009
BspTNI	GGTCTC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	1044
BssMI	GATC	6 cut(s)	12, 28, 68, 116, 211, 355
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	1044
Bst4CI	ACNGT	3 cut(s)	320, 910, 976
Bst6I	CTCTTC	2 cut(s)	279, 1155
BstACI	GRCGYC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstBAI	YACGTR	1 cut(s)	654
BstC8I	GCNNGC	5 cut(s)	25, 256, 404, 445, 457
BstDEI	CTNAG	9 cut(s)	32, 144, 159, 177, 186, 482, 523, 566, 750
BstF5I	GGATG	3 cut(s)	557, 660, 668
BstH2I	RGCGCY	1 cut(s)	819
BstHHI	GCGC	2 cut(s)	330, 818
BstKTI	GATC	6 cut(s)	15, 31, 71, 119, 214, 358
BstMAI	GTCTC	3 cut(s)	225, 326, 1169
BstMBI	GATC	6 cut(s)	12, 28, 68, 116, 211, 355
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 109, 616, 707, 722, 989
BstNSI	RCATGY	2 cut(s)	172, 639
BstSFI	CTRYAG	3 cut(s)	407, 684, 939
BstSLI	GKGCMC	1 cut(s)	1014
BstSNI	TACGTA	1 cut(s)	654
BstV1I	GCAGC	6 cut(s)	115, 393, 697, 700, 805, 947
BstV2I	GAAGAC	1 cut(s)	977
Bsu15I	ATCGAT	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	638
BsuRI	GGCC	2 cut(s)	23, 847
BsuTUI	ATCGAT	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	557, 660, 668
Cac8I	GCNNGC	5 cut(s)	25, 256, 404, 445, 457
CaiI	CAGNNNCTG	1 cut(s)	616
CfoI	GCGC	2 cut(s)	330, 818
Cfr13I	GGNCC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	2 cut(s)	199, 209
Csp6I	GTAC	4 cut(s)	374, 655, 784, 911
CviAII	CATG	5 cut(s)	86, 169, 275, 325, 636
CviQI	GTAC	4 cut(s)	374, 655, 784, 911
DdeI	CTNAG	9 cut(s)	32, 144, 159, 177, 186, 482, 523, 566, 750
DpnI	GATC	6 cut(s)	14, 30, 70, 118, 213, 357
DpnII	GATC	6 cut(s)	12, 28, 68, 116, 211, 355
Eam1104I	CTCTTC	2 cut(s)	279, 1155
EarI	CTCTTC	2 cut(s)	279, 1155
Eco105I	TACGTA	1 cut(s)	654
Eco130I	CCWWGG	1 cut(s)	1044
Eco147I	AGGCCT	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	1044
ErhI	CCWWGG	1 cut(s)	1044
FaeI	CATG	5 cut(s)	89, 172, 278, 328, 639
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	5 cut(s)	85, 168, 274, 324, 635
FauI	CCCGC	2 cut(s)	448, 976
FblI	GTMKAC	1 cut(s)	1167
Fnu4HI	GCNGC	6 cut(s)	104, 407, 711, 714, 819, 936
FokI	GGATG	3 cut(s)	544, 647, 655
Fsp4HI	GCNGC	6 cut(s)	104, 407, 711, 714, 819, 936
FspBI	CTAG	1 cut(s)	444
FspI	TGCGCA	1 cut(s)	329
GlaI	GCGC	2 cut(s)	329, 817
GluI	GCNGC	6 cut(s)	104, 407, 711, 714, 819, 936
HaeII	RGCGCY	1 cut(s)	819
HaeIII	GGCC	2 cut(s)	23, 847
HgaI	GACGC	2 cut(s)	199, 209
HhaI	GCGC	2 cut(s)	330, 818
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	5 cut(s)	89, 172, 278, 328, 639
Hin6I	GCGC	2 cut(s)	328, 816
HinP1I	GCGC	2 cut(s)	328, 816
HinfI	GANTC	5 cut(s)	150, 289, 643, 896, 1082
HphI	GGTGA	1 cut(s)	684
Hpy166II	GTNNAC	2 cut(s)	572, 1168
Hpy188I	TCNGA	7 cut(s)	130, 189, 216, 355, 475, 648, 1087
Hpy188III	TCNNGA	9 cut(s)	197, 224, 306, 395, 500, 565, 836, 871, 893
Hpy8I	GTNNAC	2 cut(s)	572, 1168
HpyAV	CCTTC	4 cut(s)	59, 321, 604, 813
HpyCH4III	ACNGT	3 cut(s)	320, 910, 976
HpyCH4IV	ACGT	2 cut(s)	653, 758
HpyCH4V	TGCA	3 cut(s)	298, 409, 610
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 109, 616, 707, 722, 989
HpyF3I	CTNAG	9 cut(s)	32, 144, 159, 177, 186, 482, 523, 566, 750
HpySE526I	ACGT	2 cut(s)	653, 758
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	5 cut(s)	89, 172, 278, 328, 639
HspAI	GCGC	2 cut(s)	328, 816
Kzo9I	GATC	6 cut(s)	12, 28, 68, 116, 211, 355
LmnI	GCTCC	3 cut(s)	41, 475, 596
Lsp1109I	GCAGC	6 cut(s)	115, 393, 697, 700, 805, 947
LweI	GCATC	4 cut(s)	442, 468, 566, 1208
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	2 cut(s)	653, 758
MaeIII	GTNAC	3 cut(s)	824, 943, 1223
MalI	GATC	6 cut(s)	14, 30, 70, 118, 213, 357
MboI	GATC	6 cut(s)	12, 28, 68, 116, 211, 355
MboII	GAAGA	8 cut(s)	22, 256, 259, 296, 443, 982, 1172, 1227
MhlI	GDGCHC	1 cut(s)	1014
MluCI	AATT	7 cut(s)	73, 267, 506, 580, 1038, 1071, 1233
MlyI	GAGTC	2 cut(s)	144, 298
MmeI	TCCRAC	2 cut(s)	339, 453
MroXI	GAANNNNTTC	1 cut(s)	866
MseI	TTAA	5 cut(s)	413, 858, 879, 1050, 1239
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	938
MwoI	GCNNNNNNNGC	6 cut(s)	33, 109, 616, 707, 722, 989
NdeII	GATC	6 cut(s)	12, 28, 68, 116, 211, 355
NheI	GCTAGC	1 cut(s)	443
NlaIII	CATG	5 cut(s)	89, 172, 278, 328, 639
NlaIV	GGNNCC	2 cut(s)	702, 1011
NmuCI	GTSAC	1 cut(s)	824
NsbI	TGCGCA	1 cut(s)	329
NspI	RCATGY	2 cut(s)	172, 639
PceI	AGGCCT	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	3 cut(s)	643, 896, 1082
PkrI	GCNGC	6 cut(s)	105, 408, 712, 715, 820, 937
PleI	GAGTC	2 cut(s)	144, 297
PpsI	GAGTC	2 cut(s)	144, 297
Ppu21I	YACGTR	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	702, 1011
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	4 cut(s)	375, 656, 785, 912
RsaNI	GTAC	4 cut(s)	374, 655, 784, 911
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	5 cut(s)	413, 858, 879, 1050, 1239
SatI	GCNGC	6 cut(s)	104, 407, 711, 714, 819, 936
Sau3AI	GATC	6 cut(s)	12, 28, 68, 116, 211, 355
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	144, 298
SduI	GDGCHC	1 cut(s)	1014
SfaNI	GCATC	4 cut(s)	442, 468, 566, 1208
SfcI	CTRYAG	3 cut(s)	407, 684, 939
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SnaBI	TACGTA	1 cut(s)	654
Sse9I	AATT	7 cut(s)	73, 267, 506, 580, 1038, 1071, 1233
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	3 cut(s)	455, 624, 983
SspMI	CTAG	1 cut(s)	444
StuI	AGGCCT	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	1044
TaaI	ACNGT	3 cut(s)	320, 910, 976
TaiI	ACGT	2 cut(s)	656, 761
TaqI	TCGA	4 cut(s)	115, 361, 870, 894
TasI	AATT	7 cut(s)	73, 267, 506, 580, 1038, 1071, 1233
TatI	WGTACW	2 cut(s)	373, 783
TfiI	GAWTC	3 cut(s)	643, 896, 1082
Tru1I	TTAA	5 cut(s)	413, 858, 879, 1050, 1239
Tru9I	TTAA	5 cut(s)	413, 858, 879, 1050, 1239
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	6 cut(s)	103, 406, 710, 713, 818, 935
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	5 cut(s)	17, 507, 586, 795, 1101
TspGWI	ACGGA	2 cut(s)	34, 1198
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	2 cut(s)	172, 639
XmiI	GTMKAC	1 cut(s)	1167
XmnI	GAANNNNTTC	1 cut(s)	866
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.