Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Reverse (-)

50203995 .. 50210011

Gene Structure 6017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG242300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGAAGTTGAAGATCAACAAGGCCTGCGATCTCAGCTCCATCTCCGTCCTTCCTCCTCACAACAGGAGATCAAATTCTGTTTCACATGGACCACAAGGTTCGCAGCTTCAGCTTCGATCTCAACCATCAGAGCAGTCATTTTCTCAGGGACTCTCATCTCAGTATGGCATGTTTTCTCAGCTCTCTCAGACGTCTCTTGACGCTTTTACAGATCAGAGGTCTCAAGAACGGGAGAACACTGTGAAGAAGATTGCTCGCTTACCCCTAATTAGTCATGCCCGTGAAGAGAGTCAAATGCAGATTTCAAGACCTTCCAACAGTCTCACGCGCAAATGGAGTTCTGCTTCTGGTTCAGATCATCGATGTCAGATCAGTGAGGAATTTGAACATCGTATTGGAATAATGGAAACTTCATTAAGCAAGTTTGGGATGATCTTGGATTCTGTCCAGAGTGACGTTATGCAAGTAAAGAAAGGAACAAAAGAAGTTTCAATGGAGATGGAAGCAGTACAGCAGAAGTTGATGGTTCAAGATAGCTTGCTGCAGTTAATGAATAAGGGGCAAGAAGATTTCAAAGCTAGCCTTGATGCGGGCATCAAATCTATGTCGGAGCAACTGAGCAAAAATGAAAATCAAGATAAATTACAGGAGATGTTCTTAGTGCTTTCAGCCTTACCAGAAAAGATTGAAGCATCCATCCTGAGTTCACAAAATAATTTACACAGCTCCTTCATCAAGGAAATGCAGAAACTGCTTTGCAGTATCCAAACATGCCAGAATCAGATTATGTACCCCATCCAAACATCCAAAGTGCTATCTGTAGTTTCACCAAAGGCACCAAAGGCTGCTGCCATTCCTGCTATTCCACAAGTAGAGCAAAAGCCTAAGAGGACGTATGTGAGAAAGTATGTGAGGAAGTACAAAGCACAAGCACCCTCTTTACCTTCGTCAAAGGGCGCTGCCTGTCACTCTGTTCCAGAAAAAAGGACACAGCCTATTAAGAAAGAGTTCGAGAGGCTTAAAAACCCTGCTCTTGATTCCCACTCAACTGTACCTCCAAAGGTTTCTGTTCAAGCAGCTGTAGTTACAACGACAGAAACAGGAGGCTGGAAGACTGTAAAGGCGGGAAAAGCAACCTCTATTGATAGGGTGCCCCAGAAAGCACAAAAACATAATGGAATTACCTTGGTTAAACAGGAAAGAGGAGGTAGAATTATCATTGAATCAGATGAGGACATTGATGGAGGATTTTCATTCTTACTTGACGAGAAAGAAACAGACATAAAAAACTATATGATTGAAGAGGTAGACCAAGAGACAGAACGGATTTTGAGGAGGGCAAGGAGGCGAAAGAGAAGATGCTGTAACCCTTTAATTATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

461

Amino Acids

51.77

Weight (kDa)

9.5

Isoelectric Point (pI)

59.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AccB1I	GGYRCC	2 cut(s)	835, 1150
AccI	GTMKAC	1 cut(s)	1308
AccII	CGCG	1 cut(s)	328
AciI	CCGC	2 cut(s)	590, 1124
AcsI	RAATTY	2 cut(s)	73, 380
AcuI	CTGAAG	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	4 cut(s)	510, 791, 920, 1053
AfiI	CCNNNNNNNGG	1 cut(s)	589
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	8 cut(s)	36, 106, 112, 181, 537, 578, 726, 1079
AluI	AGCT	8 cut(s)	36, 106, 112, 181, 537, 578, 726, 1079
Alw26I	GTCTC	4 cut(s)	198, 225, 326, 1310
AlwNI	CAGNNNCTG	1 cut(s)	751
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	6 cut(s)	103, 541, 845, 848, 959, 1076
ApoI	RAATTY	2 cut(s)	73, 380
Asp700I	GAANNNNTTC	1 cut(s)	1007
AspLEI	GCGC	2 cut(s)	330, 959
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	819
AsuNHI	GCTAGC	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	1155
BanI	GGYRCC	2 cut(s)	835, 1150
BbsI	GAAGAC	1 cut(s)	1118
BbvI	GCAGC	6 cut(s)	115, 528, 832, 835, 946, 1088
BccI	CCATC	7 cut(s)	47, 133, 493, 517, 704, 803, 1235
BciVI	GTATCC	1 cut(s)	773
BcoDI	GTCTC	4 cut(s)	198, 225, 326, 1310
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	3 cut(s)	542, 819, 1080
BfoI	RGCGCY	1 cut(s)	960
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	6 cut(s)	104, 542, 846, 849, 960, 1077
BlsI	GCNGC	6 cut(s)	105, 543, 847, 850, 961, 1078
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	837, 1152
BmsI	GCATC	4 cut(s)	577, 603, 701, 1349
BmtI	GCTAGC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	1118
BpuEI	CTTGAG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	1185
BsaXI	ACNNNNNCTCC	2 cut(s)	1039, 1069
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	1185
BseGI	GGATG	5 cut(s)	435, 692, 696, 795, 803
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMII	CTCAG	7 cut(s)	46, 158, 173, 191, 200, 608, 692
BseRI	GAGGAG	3 cut(s)	45, 1218, 1348
BseSI	GKGCMC	1 cut(s)	1155
BseXI	GCAGC	6 cut(s)	115, 528, 832, 835, 946, 1088
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	1 cut(s)	23
BshNI	GGYRCC	2 cut(s)	835, 1150
BshVI	ATCGAT	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	4 cut(s)	198, 225, 326, 1310
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	1155
Bsp143I	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
BspACI	CCGC	2 cut(s)	590, 1124
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	7 cut(s)	45, 157, 172, 190, 199, 609, 693
BspDI	ATCGAT	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	837, 1152
BspMAI	CTGCAG	1 cut(s)	546
BspOI	GCTAGC	1 cut(s)	582
BspT107I	GGYRCC	2 cut(s)	835, 1150
BspTNI	GGTCTC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	1185
BssMI	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	1185
Bst4CI	ACNGT	4 cut(s)	241, 320, 1051, 1117
Bst6I	CTCTTC	2 cut(s)	279, 1296
BstACI	GRCGYC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	751
BstC8I	GCNNGC	5 cut(s)	25, 256, 539, 580, 592
BstDEI	CTNAG	9 cut(s)	32, 144, 159, 177, 186, 617, 658, 701, 885
BstF5I	GGATG	5 cut(s)	435, 692, 696, 795, 803
BstFNI	CGCG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	960
BstHHI	GCGC	2 cut(s)	330, 959
BstKTI	GATC	8 cut(s)	15, 31, 71, 119, 214, 358, 372, 435
BstMAI	GTCTC	4 cut(s)	198, 225, 326, 1310
BstMBI	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 109, 751, 842, 857, 1130
BstNSI	RCATGY	2 cut(s)	172, 774
BstSFI	CTRYAG	3 cut(s)	542, 819, 1080
BstSLI	GKGCMC	1 cut(s)	1155
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	6 cut(s)	115, 528, 832, 835, 946, 1088
BstV2I	GAAGAC	1 cut(s)	1118
Bsu15I	ATCGAT	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	361
BtsCI	GGATG	5 cut(s)	435, 692, 696, 795, 803
BtsIMutI	CAGTG	2 cut(s)	237, 379
Cac8I	GCNNGC	5 cut(s)	25, 256, 539, 580, 592
CaiI	CAGNNNCTG	1 cut(s)	751
CfoI	GCGC	2 cut(s)	330, 959
Cfr13I	GGNCC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	4 cut(s)	509, 790, 919, 1052
CviAII	CATG	4 cut(s)	86, 169, 275, 771
CviQI	GTAC	4 cut(s)	509, 790, 919, 1052
DdeI	CTNAG	9 cut(s)	32, 144, 159, 177, 186, 617, 658, 701, 885
DpnI	GATC	8 cut(s)	14, 30, 70, 118, 213, 357, 371, 434
DpnII	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
Eam1104I	CTCTTC	2 cut(s)	279, 1296
EarI	CTCTTC	2 cut(s)	279, 1296
Eco130I	CCWWGG	1 cut(s)	1185
Eco147I	AGGCCT	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	1185
ErhI	CCWWGG	1 cut(s)	1185
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	4 cut(s)	89, 172, 278, 774
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	4 cut(s)	85, 168, 274, 770
FauI	CCCGC	2 cut(s)	583, 1117
FblI	GTMKAC	1 cut(s)	1308
Fnu4HI	GCNGC	6 cut(s)	104, 542, 846, 849, 960, 1077
FokI	GGATG	5 cut(s)	442, 679, 683, 782, 790
Fsp4HI	GCNGC	6 cut(s)	104, 542, 846, 849, 960, 1077
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	2 cut(s)	329, 958
GluI	GCNGC	6 cut(s)	104, 542, 846, 849, 960, 1077
HaeII	RGCGCY	1 cut(s)	960
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	330, 959
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	4 cut(s)	89, 172, 278, 774
Hin6I	GCGC	2 cut(s)	328, 957
HinP1I	GCGC	2 cut(s)	328, 957
HinfI	GANTC	6 cut(s)	150, 289, 440, 778, 1037, 1223
HphI	GGTGA	1 cut(s)	819
Hpy166II	GTNNAC	2 cut(s)	707, 1309
Hpy188I	TCNGA	8 cut(s)	130, 189, 216, 355, 369, 610, 783, 1228
Hpy8I	GTNNAC	2 cut(s)	707, 1309
HpyAV	CCTTC	4 cut(s)	59, 321, 739, 954
HpyCH4III	ACNGT	4 cut(s)	241, 320, 1051, 1117
HpyCH4IV	ACGT	3 cut(s)	191, 456, 893
HpyCH4V	TGCA	5 cut(s)	298, 463, 544, 745, 759
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 109, 751, 842, 857, 1130
HpyF3I	CTNAG	9 cut(s)	32, 144, 159, 177, 186, 617, 658, 701, 885
HpySE526I	ACGT	3 cut(s)	191, 456, 893
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	4 cut(s)	89, 172, 278, 774
HspAI	GCGC	2 cut(s)	328, 957
Kzo9I	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
LmnI	GCTCC	3 cut(s)	41, 610, 731
Lsp1109I	GCAGC	6 cut(s)	115, 528, 832, 835, 946, 1088
LweI	GCATC	4 cut(s)	577, 603, 701, 1349
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	3 cut(s)	191, 456, 893
MaeIII	GTNAC	4 cut(s)	452, 965, 1084, 1364
MalI	GATC	8 cut(s)	14, 30, 70, 118, 213, 357, 371, 434
MboI	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
MboII	GAAGA	8 cut(s)	22, 256, 259, 296, 578, 1123, 1313, 1368
MhlI	GDGCHC	1 cut(s)	1155
MluCI	AATT	8 cut(s)	73, 267, 380, 641, 715, 1179, 1212, 1374
MlyI	GAGTC	2 cut(s)	144, 298
MmeI	TCCRAC	2 cut(s)	339, 588
MroXI	GAANNNNTTC	1 cut(s)	1007
MseI	TTAA	7 cut(s)	416, 548, 999, 1020, 1191, 1373, 1380
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	1079
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	6 cut(s)	33, 109, 751, 842, 857, 1130
NdeII	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
NheI	GCTAGC	1 cut(s)	578
NlaIII	CATG	4 cut(s)	89, 172, 278, 774
NlaIV	GGNNCC	2 cut(s)	837, 1152
NmuCI	GTSAC	2 cut(s)	452, 965
NspI	RCATGY	2 cut(s)	172, 774
PceI	AGGCCT	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	1007
PfeI	GAWTC	4 cut(s)	440, 778, 1037, 1223
PkrI	GCNGC	6 cut(s)	105, 543, 847, 850, 961, 1078
PleI	GAGTC	2 cut(s)	144, 297
PpsI	GAGTC	2 cut(s)	144, 297
PspN4I	GGNNCC	2 cut(s)	837, 1152
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	1079
RsaI	GTAC	4 cut(s)	510, 791, 920, 1053
RsaNI	GTAC	4 cut(s)	509, 790, 919, 1052
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	7 cut(s)	416, 548, 999, 1020, 1191, 1373, 1380
SatI	GCNGC	6 cut(s)	104, 542, 846, 849, 960, 1077
Sau3AI	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	144, 298
SduI	GDGCHC	1 cut(s)	1155
SfaNI	GCATC	4 cut(s)	577, 603, 701, 1349
SfcI	CTRYAG	3 cut(s)	542, 819, 1080
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	8 cut(s)	73, 267, 380, 641, 715, 1179, 1212, 1374
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	590, 1124
SspMI	CTAG	1 cut(s)	579
StuI	AGGCCT	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	1185
TaaI	ACNGT	4 cut(s)	241, 320, 1051, 1117
TaiI	ACGT	3 cut(s)	194, 459, 896
TaqI	TCGA	3 cut(s)	115, 361, 1011
TasI	AATT	8 cut(s)	73, 267, 380, 641, 715, 1179, 1212, 1374
TatI	WGTACW	2 cut(s)	508, 918
TfiI	GAWTC	4 cut(s)	440, 778, 1037, 1223
Tru1I	TTAA	7 cut(s)	416, 548, 999, 1020, 1191, 1373, 1380
Tru9I	TTAA	7 cut(s)	416, 548, 999, 1020, 1191, 1373, 1380
TscAI	CASTG	2 cut(s)	244, 379
TseFI	GTSAC	2 cut(s)	452, 965
TseI	GCWGC	6 cut(s)	103, 541, 845, 848, 959, 1076
Tsp45I	GTSAC	2 cut(s)	452, 965
TspDTI	ATGAA	6 cut(s)	17, 402, 566, 642, 721, 1242
TspGWI	ACGGA	2 cut(s)	34, 1339
TspRI	CASTG	2 cut(s)	244, 379
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	2 cut(s)	73, 380
XceI	RCATGY	2 cut(s)	172, 774
XmiI	GTMKAC	1 cut(s)	1308
XmnI	GAANNNNTTC	1 cut(s)	1007
XspI	CTAG	1 cut(s)	579
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.