Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Reverse (-)

41907239 .. 41910637

Gene Structure 3399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013822

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTGTCGCCGCCGCCACTGAAGGATAATAGGAGAGGTCGCGGCCTCCAGCGTTCAGCAGCTTTGACCACTAGAATTCCAGATTTTAACCGGATCTGTGAAGCAGTTAAAGAAGAAAAGCTCCGGCATGCTTCTACGGCGATCGGAACTCAGCTTCGGCTTCGACCTACTTCGACTCCAACAACTGGACCTGCTTCCCCGGCCTTGCCAATCAGACCTCCGACGATTCCTATGTGGACAGCTACGTCAGCACCATTGGAGTTGATTTTGACTGTGGAGCTAGATGGGAAGACATTCTCTATGTTCCGTGAACTCCGTGACATTAATCACAAGCATTTGATCTCATTCAAAGGTTTCTCTATTAGTCCTATGTTATTGCTTGTGTTCATATCTGTACAAAGGTCTCAAGAACGGGAGAACTTTGTGAAGAAGATTGCTTGCAACAATCTCATGTGGAAGTGGAGTTCTGCTTCTAGTTCAGATCATCAACGTCAGATCAGTGAGGAATTTGAACATCGTATTGGAATGATGGAAACTTCATTAAGCAAGTTCAGAATGATCTTGGATTCTGTCCAGAGTGATGTTATGCAAATAAAGAAAGGAACAAAAGAATTTTCAATGGAGAGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.88

Weight (kDa)

9.82

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccII	CGCG	1 cut(s)	42
AciI	CCGC	3 cut(s)	11, 14, 42
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	3 cut(s)	75, 506, 611
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	349, 512, 618
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AloI	GAACNNNNNNTCC	2 cut(s)	448, 480
AluBI	AGCT	5 cut(s)	62, 121, 154, 242, 280
AluI	AGCT	5 cut(s)	62, 121, 154, 242, 280
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	43, 201
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	3 cut(s)	75, 506, 611
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	278, 523
BceAI	ACGGC	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	3 cut(s)	72, 281, 474
BfuAI	ACCTGC	1 cut(s)	199
BisI	GCNGC	4 cut(s)	11, 14, 43, 60
BlsI	GCNGC	4 cut(s)	12, 15, 44, 61
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	3 cut(s)	160, 190, 614
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	45, 203
BsiEI	CGRYCG	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	91, 124, 200
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	45, 203
Bso31I	GGTCTC	1 cut(s)	408
Bsp1407I	TGTACA	1 cut(s)	394
Bsp143I	GATC	6 cut(s)	93, 141, 339, 481, 495, 558
BspACI	CCGC	3 cut(s)	11, 14, 42
BspANI	GGCC	2 cut(s)	45, 203
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	408
BsrGI	TGTACA	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	6 cut(s)	93, 141, 339, 481, 495, 558
Bst4CI	ACNGT	1 cut(s)	274
BstAUI	TGTACA	1 cut(s)	394
BstC8I	GCNNGC	2 cut(s)	129, 439
BstDEI	CTNAG	1 cut(s)	150
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	6 cut(s)	96, 144, 342, 484, 498, 561
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	6 cut(s)	93, 141, 339, 481, 495, 558
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 200, 248
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	45, 203
BtsIMutI	CAGTG	2 cut(s)	17, 505
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	129, 439
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	2 cut(s)	128, 451
CviJI	RGCY	8 cut(s)	45, 62, 121, 154, 160, 203, 242, 280
CviKI_1	RGCY	8 cut(s)	45, 62, 121, 154, 160, 203, 242, 280
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	6 cut(s)	95, 143, 341, 483, 497, 560
DpnII	GATC	6 cut(s)	93, 141, 339, 481, 495, 558
DrdI	GACNNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	75
FaeI	CATG	2 cut(s)	131, 454
FaiI	YATR	7 cut(s)	129, 233, 302, 371, 389, 452, 587
FatI	CATG	2 cut(s)	127, 450
Fnu4HI	GCNGC	4 cut(s)	11, 14, 43, 60
Fsp4HI	GCNGC	4 cut(s)	11, 14, 43, 60
FspBI	CTAG	3 cut(s)	72, 281, 474
GluI	GCNGC	4 cut(s)	11, 14, 43, 60
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	45, 203
HapII	CCGG	3 cut(s)	91, 124, 200
Hin1II	CATG	2 cut(s)	131, 454
HinfI	GANTC	3 cut(s)	175, 226, 566
HpaII	CCGG	3 cut(s)	91, 124, 200
Hpy166II	GTNNAC	2 cut(s)	237, 311
Hpy188I	TCNGA	6 cut(s)	146, 215, 222, 481, 495, 554
Hpy188III	TCNNGA	3 cut(s)	80, 407, 574
Hpy8I	GTNNAC	2 cut(s)	237, 311
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	245, 490
HpyCH4V	TGCA	2 cut(s)	441, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 200, 248
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	245, 490
Hsp92II	CATG	2 cut(s)	131, 454
Kzo9I	GATC	6 cut(s)	93, 141, 339, 481, 495, 558
LmnI	GCTCC	2 cut(s)	126, 277
LpnPI	CCDG	8 cut(s)	62, 93, 104, 137, 171, 204, 213, 587
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	3 cut(s)	72, 281, 474
MaeII	ACGT	2 cut(s)	245, 490
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	6 cut(s)	95, 143, 341, 483, 497, 560
MboI	GATC	6 cut(s)	93, 141, 339, 481, 495, 558
MboII	GAAGA	4 cut(s)	125, 301, 439, 442
MflI	RGATCY	1 cut(s)	93
MluCI	AATT	3 cut(s)	75, 506, 611
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	203, 245
MnlI	CCTC	4 cut(s)	29, 56, 228, 496
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	4 cut(s)	87, 108, 324, 542
MspI	CCGG	3 cut(s)	91, 124, 200
MspR9I	CCNGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	137, 200, 248
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	6 cut(s)	93, 141, 339, 481, 495, 558
NlaIII	CATG	2 cut(s)	131, 454
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	226, 566
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	12, 15, 44, 61
Ple19I	CGATCG	1 cut(s)	144
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	93
PvuI	CGATCG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
SaqAI	TTAA	4 cut(s)	87, 108, 324, 542
SatI	GCNGC	4 cut(s)	11, 14, 43, 60
Sau3AI	GATC	6 cut(s)	93, 141, 339, 481, 495, 558
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	3 cut(s)	75, 506, 611
SsiI	CCGC	3 cut(s)	11, 14, 42
SspMI	CTAG	3 cut(s)	72, 281, 474
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	2 cut(s)	248, 493
TaqI	TCGA	2 cut(s)	163, 173
TasI	AATT	3 cut(s)	75, 506, 611
TatI	WGTACW	1 cut(s)	394
TauI	GCSGC	3 cut(s)	13, 16, 45
TfiI	GAWTC	2 cut(s)	226, 566
Tru1I	TTAA	4 cut(s)	87, 108, 324, 542
Tru9I	TTAA	4 cut(s)	87, 108, 324, 542
TscAI	CASTG	2 cut(s)	24, 505
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	376, 528
TspGWI	ACGGA	2 cut(s)	296, 305
TspRI	CASTG	2 cut(s)	24, 505
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	3 cut(s)	75, 506, 611
XceI	RCATGY	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	3 cut(s)	72, 281, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.