Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Reverse (-)

12658007 .. 12663787

Gene Structure 5781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGAAGTTGAAGATCAACAAGGCCTGCGATCTCAGCTCCATCTCCGTCCTTCCTCCTCACTCCAGGAGATCAAATTCTGTGCAACATGGACCACAAGGTTCGCAGCTTCAGCTTCGATCTCAACCATCAGAACAGTCATTTTCTCAGGGACTCTCATCTCAGTATGGCATGTTTTCTCAGCTCTCGCAGACGTCTCTTGACGCTTTGACAGATCAGAGGTCTCAAGAACGGGAGAACTCTGTGAAGAAAATTTCTCGCTTACCCCTGATTAGTCATGCACGTGAAGAGAGTCAAATGCAGATGTCAAGACCTTCCAACAATCTCACGCGCAAGTGGAGTTCTGCTTCTGGTTCAGATAATCGATGTAATATCAGTGAGGAATTGGAACATCGTATTGGGATGATGGAAACTTCATTGAGCAAGTTTGGAATGATCTTGGATTCTGTCCAGAGTGATGTTATGCAAGTAAAGAAAGGAACAAAAGAAGTTTCAATGGAGATGGAAGCAATACAGCAGAAGTTGATGGTTCAAGACAGCTCGCTGCAGTTAATGAATAAGGGGCAAGAGGATCTCAAAGCCAGCCTTGATGTTGGTATCAAATCTATGTCGGAGCAACTGAGCAAAAATGAAAATCAAGATAAGTTACAGGAGATGTTCTTAGTGCTTTCAGCCTTACCAGAAAAGATTGAAGCATCCGTGCTGAGTTCACAAAATAATATACACAGCTCCTTCATCAAGGAAATGCAGAAACTTCTTTGCAGTATCCAAACATACCAGAATCAGATGACATACCCCATCCAAACATCCAAAGTGCCATCTGTACTTTCACCAAAGGCACTAAAGGCTGCTGCCCCTTCTATTCCACAAGTGGAGCAGACGCAGAAGAGGAAGTATGTGAGAAAGTATGTGAGGAAGTACAAAACACCTTCTTTACCATCACCAAAGGGTGCTGCCTGTCACTCTGTTCCAGAAAAAAGGCCACATCCTATTAAGAAAGAGTCCGAGAGGCTTAAGTACCCTGCTCTTGATTCCCACTCAACTGTACCCTCAACTGTACCTCCAAAGGTTTATGTTCAAGCAGCTGTAGTTACAGCGACAGAAACAGGAGGCTGGAAAACTGTAAAAGCCGGAAAAGCTACTTCTAGTCAAAGGGTGCCCCCACAAGTACAAAAACCTAATGGATATACCTCGGTGAAACAGGAAAGAGAGAGAGTTATCATTGAATCAGATGAGGACATTGATGGAGGTTTTTCATGCTTACTTGACGAGAAAGGAACAGACATAAAGAACTTTATGAATGAAGAGGTCGACCAAGAGACAGAACGGATTTTGAGGAGGGCGAGGAGGCGAAAGAGAAGATGCTGTAATCCTATAATTATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

462

Amino Acids

51.81

Weight (kDa)

9.48

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	1153
AccI	GTMKAC	1 cut(s)	1308
AccII	CGCG	1 cut(s)	328
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	73, 249
AcuI	CTGAAG	1 cut(s)	92
AcvI	CACGTG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	6 cut(s)	822, 917, 1016, 1044, 1056, 1167
AflII	CTTAAG	1 cut(s)	1010
AgsI	TTSAA	6 cut(s)	10, 492, 530, 689, 1076, 1223
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	8 cut(s)	36, 106, 112, 181, 537, 726, 1082, 1136
AluI	AGCT	8 cut(s)	36, 106, 112, 181, 537, 726, 1082, 1136
Alw26I	GTCTC	3 cut(s)	198, 225, 1310
AlwI	GGATC	1 cut(s)	576
AoxI	GGCC	2 cut(s)	21, 977
ApeKI	GCWGC	6 cut(s)	103, 541, 845, 848, 950, 1079
ApoI	RAATTY	2 cut(s)	73, 249
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	819, 930, 1204
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	1158
BanI	GGYRCC	1 cut(s)	1153
BbrPI	CACGTG	1 cut(s)	281
BbvI	GCAGC	6 cut(s)	115, 528, 832, 835, 937, 1091
BccI	CCATC	9 cut(s)	47, 133, 397, 493, 517, 803, 823, 943, 1235
BciT130I	CCWGG	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	773
BcoDI	GTCTC	3 cut(s)	198, 225, 1310
BfaI	CTAG	1 cut(s)	1143
BfmI	CTRYAG	2 cut(s)	542, 1083
BfrI	CTTAAG	1 cut(s)	1010
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	6 cut(s)	104, 542, 846, 849, 951, 1080
BlsI	GCNGC	6 cut(s)	105, 543, 847, 850, 952, 1081
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	1155
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	701, 1349
BpmI	CTGGAG	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	361
BsaAI	YACGTR	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	1188
BsaXI	ACNNNNNCTCC	2 cut(s)	1042, 1072
BseBI	CCWGG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	1188
BseGI	GGATG	5 cut(s)	405, 692, 795, 803, 982
BseMII	CTCAG	6 cut(s)	46, 158, 173, 191, 608, 692
BseRI	GAGGAG	3 cut(s)	45, 1348, 1357
BseSI	GKGCMC	1 cut(s)	1158
BseXI	GCAGC	6 cut(s)	115, 528, 832, 835, 937, 1091
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	23, 979
BshNI	GGYRCC	1 cut(s)	1153
BshVI	ATCGAT	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	1128
BslFI	GGGAC	1 cut(s)	162
BsmAI	GTCTC	3 cut(s)	198, 225, 1310
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	23, 979
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	1158
Bsp143I	GATC	7 cut(s)	12, 28, 68, 116, 211, 432, 568
BspANI	GGCC	2 cut(s)	23, 979
BspCNI	CTCAG	6 cut(s)	45, 157, 172, 190, 609, 693
BspDI	ATCGAT	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	1155
BspMAI	CTGCAG	1 cut(s)	546
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	1153
BspTI	CTTAAG	1 cut(s)	1010
BspTNI	GGTCTC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	1188
BssMI	GATC	7 cut(s)	12, 28, 68, 116, 211, 432, 568
BssNI	GRCGYC	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	4 cut(s)	135, 1042, 1054, 1120
Bst6I	CTCTTC	3 cut(s)	279, 878, 1296
BstACI	GRCGYC	1 cut(s)	191
BstAFI	CTTAAG	1 cut(s)	1010
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	25, 539, 580
BstDEI	CTNAG	7 cut(s)	32, 144, 159, 177, 617, 658, 701
BstF5I	GGATG	5 cut(s)	405, 692, 795, 803, 982
BstFNI	CGCG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	7 cut(s)	15, 31, 71, 119, 214, 435, 571
BstMAI	GTCTC	3 cut(s)	198, 225, 1310
BstMBI	GATC	7 cut(s)	12, 28, 68, 116, 211, 432, 568
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 109, 842, 1133
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	2 cut(s)	542, 1083
BstSLI	GKGCMC	1 cut(s)	1158
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	6 cut(s)	115, 528, 832, 835, 937, 1091
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	2 cut(s)	23, 979
BsuTUI	ATCGAT	1 cut(s)	361
BtsCI	GGATG	5 cut(s)	405, 692, 795, 803, 982
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	3 cut(s)	25, 539, 580
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	2 cut(s)	209, 886
Csp6I	GTAC	6 cut(s)	821, 916, 1015, 1043, 1055, 1166
CviAII	CATG	4 cut(s)	86, 169, 275, 1254
CviQI	GTAC	6 cut(s)	821, 916, 1015, 1043, 1055, 1166
DdeI	CTNAG	7 cut(s)	32, 144, 159, 177, 617, 658, 701
DpnI	GATC	7 cut(s)	14, 30, 70, 118, 213, 434, 570
DpnII	GATC	7 cut(s)	12, 28, 68, 116, 211, 432, 568
Eam1104I	CTCTTC	3 cut(s)	279, 878, 1296
EarI	CTCTTC	3 cut(s)	279, 878, 1296
Eco147I	AGGCCT	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	92
Eco72I	CACGTG	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	62
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	4 cut(s)	89, 172, 278, 1257
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	4 cut(s)	85, 168, 274, 1253
FblI	GTMKAC	1 cut(s)	1308
Fnu4HI	GCNGC	6 cut(s)	104, 542, 846, 849, 951, 1080
FokI	GGATG	5 cut(s)	412, 679, 782, 790, 969
Fsp4HI	GCNGC	6 cut(s)	104, 542, 846, 849, 951, 1080
FspBI	CTAG	1 cut(s)	1143
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	6 cut(s)	104, 542, 846, 849, 951, 1080
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	23, 979
HapII	CCGG	1 cut(s)	1128
HgaI	GACGC	2 cut(s)	209, 886
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	4 cut(s)	89, 172, 278, 1257
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	1309
HindII	GTYRAC	1 cut(s)	1309
HinfI	GANTC	7 cut(s)	150, 289, 440, 778, 998, 1028, 1223
HpaII	CCGG	1 cut(s)	1128
HphI	GGTGA	3 cut(s)	819, 930, 1204
Hpy166II	GTNNAC	2 cut(s)	707, 1309
Hpy188I	TCNGA	7 cut(s)	130, 216, 355, 610, 783, 1003, 1228
Hpy188III	TCNNGA	8 cut(s)	197, 224, 306, 448, 530, 635, 968, 1025
Hpy8I	GTNNAC	2 cut(s)	707, 1309
HpyAV	CCTTC	5 cut(s)	59, 321, 739, 864, 936
HpyCH4III	ACNGT	4 cut(s)	135, 1042, 1054, 1120
HpyCH4IV	ACGT	2 cut(s)	191, 280
HpyCH4V	TGCA	7 cut(s)	82, 278, 298, 463, 544, 745, 759
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 109, 842, 1133
HpyF3I	CTNAG	7 cut(s)	32, 144, 159, 177, 617, 658, 701
HpySE526I	ACGT	2 cut(s)	191, 280
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	4 cut(s)	89, 172, 278, 1257
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	7 cut(s)	12, 28, 68, 116, 211, 432, 568
LmnI	GCTCC	4 cut(s)	41, 610, 731, 871
Lsp1109I	GCAGC	6 cut(s)	115, 528, 832, 835, 937, 1091
LweI	GCATC	2 cut(s)	701, 1349
MaeI	CTAG	1 cut(s)	1143
MaeII	ACGT	2 cut(s)	191, 280
MaeIII	GTNAC	3 cut(s)	642, 956, 1087
MalI	GATC	7 cut(s)	14, 30, 70, 118, 213, 434, 570
MboI	GATC	7 cut(s)	12, 28, 68, 116, 211, 432, 568
MboII	GAAGA	6 cut(s)	22, 256, 296, 895, 1313, 1368
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	1158
MluCI	AATT	4 cut(s)	73, 249, 380, 1374
MlyI	GAGTC	3 cut(s)	144, 298, 1007
MmeI	TCCRAC	2 cut(s)	339, 588
MseI	TTAA	4 cut(s)	548, 990, 1011, 1380
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	1082
MspCI	CTTAAG	1 cut(s)	1010
MspI	CCGG	1 cut(s)	1128
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	4 cut(s)	33, 109, 842, 1133
NdeII	GATC	7 cut(s)	12, 28, 68, 116, 211, 432, 568
NlaIII	CATG	4 cut(s)	89, 172, 278, 1257
NlaIV	GGNNCC	1 cut(s)	1155
NmuCI	GTSAC	1 cut(s)	956
NspI	RCATGY	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	440, 778, 1028, 1223
PfoI	TCCNGGA	1 cut(s)	62
PkrI	GCNGC	6 cut(s)	105, 543, 847, 850, 952, 1081
PleI	GAGTC	3 cut(s)	144, 297, 1006
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
PpsI	GAGTC	3 cut(s)	144, 297, 1006
Ppu21I	YACGTR	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	62
PspCI	CACGTG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	1155
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	546
PsuI	RGATCY	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	1082
RsaI	GTAC	6 cut(s)	822, 917, 1016, 1044, 1056, 1167
RsaNI	GTAC	6 cut(s)	821, 916, 1015, 1043, 1055, 1166
RseI	CAYNNNNRTG	1 cut(s)	279
SalI	GTCGAC	1 cut(s)	1307
SaqAI	TTAA	4 cut(s)	548, 990, 1011, 1380
SatI	GCNGC	6 cut(s)	104, 542, 846, 849, 951, 1080
Sau3AI	GATC	7 cut(s)	12, 28, 68, 116, 211, 432, 568
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	3 cut(s)	144, 298, 1007
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	1158
SfaNI	GCATC	2 cut(s)	701, 1349
SfcI	CTRYAG	2 cut(s)	542, 1083
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	222, 1010
SmoI	CTYRAG	2 cut(s)	222, 1010
Sse9I	AATT	4 cut(s)	73, 249, 380, 1374
SseBI	AGGCCT	1 cut(s)	23
SspMI	CTAG	1 cut(s)	1143
StuI	AGGCCT	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	4 cut(s)	135, 1042, 1054, 1120
TaiI	ACGT	2 cut(s)	194, 283
TaqI	TCGA	3 cut(s)	115, 361, 1308
TasI	AATT	4 cut(s)	73, 249, 380, 1374
TatI	WGTACW	3 cut(s)	820, 915, 1165
TfiI	GAWTC	4 cut(s)	440, 778, 1028, 1223
Tru1I	TTAA	4 cut(s)	548, 990, 1011, 1380
Tru9I	TTAA	4 cut(s)	548, 990, 1011, 1380
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	956
TseI	GCWGC	6 cut(s)	103, 541, 845, 848, 950, 1079
Tsp45I	GTSAC	1 cut(s)	956
TspDTI	ATGAA	8 cut(s)	17, 402, 566, 642, 721, 1242, 1310, 1314
TspGWI	ACGGA	3 cut(s)	34, 685, 1339
TspRI	CASTG	1 cut(s)	379
Vha464I	CTTAAG	1 cut(s)	1010
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	2 cut(s)	73, 249
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	1308
XspI	CTAG	1 cut(s)	1143
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.