Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Reverse (-)

21787173 .. 21791979

Gene Structure 4807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAAGTTAAAGATCAACAAGGCCTGCGATCTCAGCTCCATCTCGGTCCTTCCTCCACACACAAGGAGGCCAAATGCTGTGCCAAATGGACCACAAGCATCGCAGCTTCGATCTCAACCATCGGAGCAGTCATTTTCTCAGGGATTCTCATCTCAGCATGGCATGTTTTCTCAGCTCTCTCAGAACTCTCTTAGTGACGTTCTGACCAATGATCAGAGGTTTGGCTCTCAAGAACGAGAGAATTCTGTGAAGAAGATTGCCTGCTTACCCCCAATTAGTCATGCACGTGAAGAGAGTCAAATGCATATCGCAAGATCTTCCACCAACTTCATGCGCAAGTGGAGTTCTGCGTCCGGTTCAGATCATCGAGGTCAGACTAGTGAGGAATTTGAACACCGGATTGGAATGATGGAAACTTCATTGAATAAGTTTGGAATGATCTTGGATTCAGTCCAGAGTGATGTCATGCAAGTAAACAAAGGAATGAAGGAAGTATCTATGGAGATGGAAGCGATGCGGCAGAAGTTGACAGCTCAGGATAACTCATTGCAGTTAATGAGTAAGGGGCAAGAAGATTTCAAAGCTAGTTTTGATGGGGGCATCAAGTCTATGTCTGAACAACTGAGCAAAAATAACTCTCAAGACAAATTACAGGAGATGTTCTTGGTGCTTTCAGCCTTACCAGTAAAAATAGAAATCATAGAAGCATCTTTACTGAAATCACAGAATAAGCTGCACGACTCCTTCGTCAAGGAAATGCAGAAAATGATTTGCAGCCAGAATCAGAATACCTCCATCCAAAAATGTGAAATATCCTCTATACTTTCACCTAAGGGCGTTGCTGCCTCTCGTGCTATTCCACAAGGAAAGCCACAGCCTATTAAAAGCTTAGCTGTGCCTCCAAAGGCTTGTGTGCAAGCAGTTGTAGTTCCAAAGACAGAAACAGGGGGCTGGAAGACTGTTAAGGCGGAAAAAGCTACGTTTAGTGACAGCGGGTTCCGGAAAGTGCAAAAACCTAATAGATTTACTTCCATCCAAAAGGAAAGAGAATGCAGAGTTGTCATTGAATCAGATGAGGAGATTGACGGAGCCTTTTCCTGCTTGCTTGACGAGAAAGAAACAGACGTAGACATGGCTGAGGAGGTAAAGGAAGAGACACAACGGATTTTGAGGAGGGCAAGGAGGCGAAAGAGAAAATTATGCAACACTATAATTATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

45.6

Weight (kDa)

9.14

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	746
Acc16I	TGCGCA	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	1128
AccIII	TCCGGA	1 cut(s)	999
AciI	CCGC	3 cut(s)	517, 968, 993
AcsI	RAATTY	2 cut(s)	241, 386
AcvI	CACGTG	1 cut(s)	287
AgsI	TTSAA	4 cut(s)	392, 424, 580, 1067
AhlI	ACTAGT	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	9 cut(s)	36, 106, 175, 533, 584, 733, 888, 893, 977
AluI	AGCT	9 cut(s)	36, 106, 175, 533, 584, 733, 888, 893, 977
Alw26I	GTCTC	1 cut(s)	1148
Aor13HI	TCCGGA	1 cut(s)	999
AoxI	GGCC	2 cut(s)	21, 68
ApeKI	GCWGC	4 cut(s)	103, 733, 774, 842
ApoI	RAATTY	2 cut(s)	241, 386
AseI	ATTAAT	1 cut(s)	1218
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	46, 89
AsuHPI	GGTGA	1 cut(s)	819
AvaII	GGWCC	2 cut(s)	46, 89
AxyI	CCTNAGG	1 cut(s)	831
BarI	GAAGNNNNNNTAC	2 cut(s)	696, 728
BauI	CACGAG	1 cut(s)	849
BbrPI	CACGTG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	962
BbvCI	CCTCAGC	1 cut(s)	1137
BbvI	GCAGC	4 cut(s)	115, 720, 786, 829
BccI	CCATC	7 cut(s)	47, 127, 403, 499, 587, 803, 1040
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	1148
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	2 cut(s)	378, 585
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	5 cut(s)	104, 518, 734, 775, 843
BlpI	GCTNAGC	1 cut(s)	889
BlsI	GCNGC	5 cut(s)	105, 519, 735, 776, 844
Bme18I	GGWCC	2 cut(s)	46, 89
BmgT120I	GGNCC	2 cut(s)	46, 89
BmiI	GGNNCC	2 cut(s)	998, 1090
BmsI	GCATC	4 cut(s)	107, 504, 609, 716
BpiI	GAAGAC	1 cut(s)	962
Bpu10I	CCTNAGC	2 cut(s)	534, 1137
Bpu1102I	GCTNAGC	1 cut(s)	889
BpuEI	CTTGAG	2 cut(s)	213, 624
BsaAI	YACGTR	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	148
BsaWI	WCCGGW	3 cut(s)	353, 396, 999
Bse1I	ACTGG	1 cut(s)	683
Bse21I	CCTNAGG	1 cut(s)	831
Bse3DI	GCAATG	1 cut(s)	545
Bse8I	GATNNNNATC	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	999
BseGI	GGATG	2 cut(s)	795, 1032
BseJI	GATNNNNATC	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	8 cut(s)	46, 152, 167, 185, 194, 548, 614, 1128
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	3 cut(s)	1091, 1154, 1186
BseXI	GCAGC	4 cut(s)	115, 720, 786, 829
BsgI	GTGCAG	1 cut(s)	719
BshFI	GGCC	2 cut(s)	23, 70
BsiSI	CCGG	3 cut(s)	354, 397, 1000
BsmAI	GTCTC	1 cut(s)	1148
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	2 cut(s)	23, 70
Bsp13I	TCCGGA	1 cut(s)	999
Bsp143I	GATC	7 cut(s)	12, 28, 110, 211, 314, 361, 438
Bsp1720I	GCTNAGC	1 cut(s)	889
BspACI	CCGC	3 cut(s)	517, 968, 993
BspANI	GGCC	2 cut(s)	23, 70
BspCNI	CTCAG	8 cut(s)	45, 151, 166, 184, 193, 547, 615, 1129
BspEI	TCCGGA	1 cut(s)	999
BspLI	GGNNCC	2 cut(s)	998, 1090
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	683
BssMI	GATC	7 cut(s)	12, 28, 110, 211, 314, 361, 438
BssSI	CACGAG	1 cut(s)	849
Bst2BI	CACGAG	1 cut(s)	849
Bst4CI	ACNGT	1 cut(s)	961
Bst6I	CTCTTC	2 cut(s)	285, 1146
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	4 cut(s)	25, 262, 918, 1103
BstF5I	GGATG	2 cut(s)	795, 1032
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	7 cut(s)	15, 31, 113, 214, 317, 364, 441
BstMAI	GTCTC	1 cut(s)	1148
BstMBI	GATC	7 cut(s)	12, 28, 110, 211, 314, 361, 438
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 851, 974
BstNSI	RCATGY	1 cut(s)	166
BstV1I	GCAGC	4 cut(s)	115, 720, 786, 829
BstV2I	GAAGAC	1 cut(s)	962
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
Bsu36I	CCTNAGG	1 cut(s)	831
BsuRI	GGCC	2 cut(s)	23, 70
BtgZI	GCGATG	2 cut(s)	84, 527
BtsCI	GGATG	2 cut(s)	795, 1032
Cac8I	GCNNGC	4 cut(s)	25, 262, 918, 1103
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	46, 89
CseI	GACGC	1 cut(s)	339
CviAII	CATG	6 cut(s)	158, 163, 281, 331, 466, 1132
DpnI	GATC	7 cut(s)	14, 30, 112, 213, 316, 363, 440
DpnII	GATC	7 cut(s)	12, 28, 110, 211, 314, 361, 438
DrdI	GACNNNNNNGTC	1 cut(s)	746
DseDI	GACNNNNNNGTC	1 cut(s)	746
Eam1104I	CTCTTC	2 cut(s)	285, 1146
EarI	CTCTTC	2 cut(s)	285, 1146
EciI	GGCGGA	1 cut(s)	983
Eco147I	AGGCCT	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	46, 89
Eco72I	CACGTG	1 cut(s)	287
Eco81I	CCTNAGG	1 cut(s)	831
EcoRI	GAATTC	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	306
FaeI	CATG	6 cut(s)	161, 166, 284, 334, 469, 1135
FatI	CATG	6 cut(s)	157, 162, 280, 330, 465, 1131
FauI	CCCGC	1 cut(s)	986
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	1128
Fnu4HI	GCNGC	5 cut(s)	104, 518, 734, 775, 843
FokI	GGATG	2 cut(s)	782, 1019
Fsp4HI	GCNGC	5 cut(s)	104, 518, 734, 775, 843
FspBI	CTAG	2 cut(s)	378, 585
FspI	TGCGCA	1 cut(s)	335
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	5 cut(s)	104, 518, 734, 775, 843
HaeIII	GGCC	2 cut(s)	23, 70
HapII	CCGG	3 cut(s)	354, 397, 1000
HgaI	GACGC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	6 cut(s)	161, 166, 284, 334, 469, 1135
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HindIII	AAGCTT	1 cut(s)	886
HinfI	GANTC	6 cut(s)	144, 295, 446, 740, 781, 1067
HpaII	CCGG	3 cut(s)	354, 397, 1000
HphI	GGTGA	1 cut(s)	819
Hpy166II	GTNNAC	3 cut(s)	475, 528, 1129
Hpy188I	TCNGA	9 cut(s)	124, 183, 204, 216, 361, 375, 616, 786, 1072
Hpy188III	TCNNGA	5 cut(s)	230, 454, 536, 641, 1000
Hpy8I	GTNNAC	3 cut(s)	475, 528, 1129
HpyAV	CCTTC	3 cut(s)	59, 481, 754
HpyCH4III	ACNGT	1 cut(s)	961
HpyCH4IV	ACGT	4 cut(s)	198, 286, 980, 1125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 851, 974
HpySE526I	ACGT	4 cut(s)	198, 286, 980, 1125
Hsp92II	CATG	6 cut(s)	161, 166, 284, 334, 469, 1135
HspAI	GCGC	1 cut(s)	334
Kpn2I	TCCGGA	1 cut(s)	999
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	7 cut(s)	12, 28, 110, 211, 314, 361, 438
LmnI	GCTCC	3 cut(s)	41, 124, 1088
Lsp1109I	GCAGC	4 cut(s)	115, 720, 786, 829
LweI	GCATC	4 cut(s)	107, 504, 609, 716
MaeI	CTAG	2 cut(s)	378, 585
MaeII	ACGT	4 cut(s)	198, 286, 980, 1125
MaeIII	GTNAC	2 cut(s)	194, 986
MalI	GATC	7 cut(s)	14, 30, 112, 213, 316, 363, 440
MboI	GATC	7 cut(s)	12, 28, 110, 211, 314, 361, 438
MboII	GAAGA	7 cut(s)	262, 265, 302, 309, 584, 967, 1163
MflI	RGATCY	1 cut(s)	314
MluCI	AATT	7 cut(s)	241, 273, 386, 647, 1196, 1212, 1219
MlyI	GAGTC	2 cut(s)	304, 734
Mph1103I	ATGCAT	1 cut(s)	306
MroI	TCCGGA	1 cut(s)	999
MseI	TTAA	5 cut(s)	8, 554, 882, 963, 1218
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	993
MspI	CCGG	3 cut(s)	354, 397, 1000
Mva1269I	GAATGC	1 cut(s)	1055
MwoI	GCNNNNNNNGC	3 cut(s)	33, 851, 974
NdeII	GATC	7 cut(s)	12, 28, 110, 211, 314, 361, 438
NlaIII	CATG	6 cut(s)	161, 166, 284, 334, 469, 1135
NlaIV	GGNNCC	2 cut(s)	998, 1090
NmuCI	GTSAC	2 cut(s)	194, 986
NsbI	TGCGCA	1 cut(s)	335
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PctI	GAATGC	1 cut(s)	1055
PfeI	GAWTC	4 cut(s)	144, 446, 781, 1067
PkrI	GCNGC	5 cut(s)	105, 519, 735, 776, 844
PleI	GAGTC	2 cut(s)	303, 734
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
PpsI	GAGTC	2 cut(s)	303, 734
Ppu21I	YACGTR	1 cut(s)	287
PshBI	ATTAAT	1 cut(s)	1218
PspCI	CACGTG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	998, 1090
PspPI	GGNCC	2 cut(s)	46, 89
PsuI	RGATCY	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	5 cut(s)	8, 554, 882, 963, 1218
SatI	GCNGC	5 cut(s)	104, 518, 734, 775, 843
Sau3AI	GATC	7 cut(s)	12, 28, 110, 211, 314, 361, 438
Sau96I	GGNCC	2 cut(s)	46, 89
SchI	GAGTC	2 cut(s)	304, 734
SfaNI	GCATC	4 cut(s)	107, 504, 609, 716
SinI	GGWCC	2 cut(s)	46, 89
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	228, 639
SmoI	CTYRAG	2 cut(s)	228, 639
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	7 cut(s)	241, 273, 386, 647, 1196, 1212, 1219
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	3 cut(s)	517, 968, 993
SspMI	CTAG	2 cut(s)	378, 585
StuI	AGGCCT	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	961
TaiI	ACGT	4 cut(s)	201, 289, 983, 1128
TaqI	TCGA	2 cut(s)	109, 367
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	7 cut(s)	241, 273, 386, 647, 1196, 1212, 1219
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	4 cut(s)	144, 446, 781, 1067
Tru1I	TTAA	5 cut(s)	8, 554, 882, 963, 1218
Tru9I	TTAA	5 cut(s)	8, 554, 882, 963, 1218
TseFI	GTSAC	2 cut(s)	194, 986
TseI	GCWGC	4 cut(s)	103, 733, 774, 842
Tsp45I	GTSAC	2 cut(s)	194, 986
TspDTI	ATGAA	4 cut(s)	17, 319, 408, 500
TspGWI	ACGGA	2 cut(s)	1101, 1177
VpaK11BI	GGWCC	2 cut(s)	46, 89
VspI	ATTAAT	1 cut(s)	1218
XapI	RAATTY	2 cut(s)	241, 386
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	1128
XspI	CTAG	2 cut(s)	378, 585
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.