Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Forward (+)

15228427 .. 15230919

Gene Structure 2493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13450.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAGTTGAAGATCAACAAGGTCTGCGATCTCAGCTCCATCTCCGTCCTTCCTCCTCACACAAGGAGACCAAATGCTGTACCAAATGGACAAGCATCACAGCTTCGATCTCAACCATCAGACCAGTCATACTCTCAGGGACTCTCATCTCAGCATAACATGTTTTCTCAACTGTCTCAGAACTCCCAATGTGACATTCTCACAAACGATCAGAGGTTTGGTTCTCAAGAACGAGCGAATTCTGCTAAGAAAGTTGCTTACTTACCCCTAAGTAGTCATGCACGTGATGAGAGTCAAGTGCAGATCTCAAGATCTTCCACCAACCTCATGCGCAAGTGGAGTTCCGCTTCTGTTTTAGATCGTGAATGTCTGAATAGTGAGGAATTTGAACACCGGATTGGAGTGATGGAAACTTCATTAAATAAGTTCGGAATGATCTTGGATTCTGTCCAGAGTGATGTCATGCAAGTAAACAAAGGGATGAAGGATGTTTCTATGGAGATGGAAGTAATGCGGCAGAAGTTGATGGCTCAGGATCACTTATTGCAGTTAATGATTAAGGGGCAAGAAAATTTCAAAACTAGTCTTGACGGAGGCATCAAGTCTATTTCTGAAGAAGTGAGCAAAATTACCTATCAAGACAAATTACAGGAGATTTCCTTGGCGCTTTCAGCCTTACCAGAAAAGATAGGAGCCACTGAAGCAACTTTACTGAAATCACAAAACAAGCTGCACGAATCCTTTGTCAAGGAAATGCAGGTCTGTATGATGTACAATGGACAGCTCTGTGACACATGCAAACATATAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.51

Weight (kDa)

8.17

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	748
AciI	CCGC	2 cut(s)	345, 514
AclWI	GGATC	1 cut(s)	543
AcsI	RAATTY	3 cut(s)	238, 383, 571
AcuI	CTGAAG	2 cut(s)	633, 720
AcvI	CACGTG	1 cut(s)	284
AfaI	GTAC	2 cut(s)	81, 773
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	10, 389, 577
AhlI	ACTAGT	1 cut(s)	581
AjuI	GAANNNNNNNTTGG	4 cut(s)	180, 212, 381, 413
AluBI	AGCT	4 cut(s)	36, 103, 730, 784
AluI	AGCT	4 cut(s)	36, 103, 730, 784
Alw26I	GTCTC	2 cut(s)	61, 180
AlwI	GGATC	1 cut(s)	543
ApeKI	GCWGC	1 cut(s)	730
ApoI	RAATTY	3 cut(s)	238, 383, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	729, 761
AspLEI	GCGC	2 cut(s)	333, 667
BarI	GAAGNNNNNNTAC	2 cut(s)	693, 725
BbrPI	CACGTG	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	717
BccI	CCATC	5 cut(s)	47, 124, 400, 496, 520
BcoDI	GTCTC	2 cut(s)	61, 180
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	668
BfuAI	ACCTGC	1 cut(s)	748
BglII	AGATCT	2 cut(s)	303, 311
BisI	GCNGC	2 cut(s)	515, 731
BlsI	GCNGC	2 cut(s)	516, 732
BmiI	GGNNCC	1 cut(s)	694
BmsI	GCATC	2 cut(s)	104, 606
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	210, 292
BsaAI	YACGTR	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	660
BsaWI	WCCGGW	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	486, 493
BseMII	CTCAG	5 cut(s)	46, 149, 164, 191, 545
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	717
BsgI	GTGCAG	2 cut(s)	320, 716
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	61, 180
BsmFI	GGGAC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	771
Bsp143I	GATC	9 cut(s)	12, 28, 107, 208, 303, 311, 358, 435, 535
BspACI	CCGC	2 cut(s)	345, 514
BspCNI	CTCAG	5 cut(s)	45, 148, 163, 190, 544
BspLI	GGNNCC	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	748
BspPI	GGATC	1 cut(s)	543
BspTNI	GGTCTC	1 cut(s)	61
BsrGI	TGTACA	1 cut(s)	771
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	9 cut(s)	12, 28, 107, 208, 303, 311, 358, 435, 535
BssT1I	CCWWGG	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	174
BstAUI	TGTACA	1 cut(s)	771
BstBAI	YACGTR	1 cut(s)	284
BstDEI	CTNAG	7 cut(s)	32, 135, 150, 177, 246, 269, 531
BstF5I	GGATG	2 cut(s)	486, 493
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	2 cut(s)	333, 667
BstKTI	GATC	9 cut(s)	15, 31, 110, 211, 306, 314, 361, 438, 538
BstMAI	GTCTC	2 cut(s)	61, 180
BstMBI	GATC	9 cut(s)	12, 28, 107, 208, 303, 311, 358, 435, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 242, 671, 701
BstNSI	RCATGY	2 cut(s)	163, 798
BstV1I	GCAGC	1 cut(s)	717
BstX2I	RGATCY	2 cut(s)	303, 311
BstYI	RGATCY	2 cut(s)	303, 311
BtsCI	GGATG	2 cut(s)	486, 493
BtsIMutI	CAGTG	1 cut(s)	696
BveI	ACCTGC	1 cut(s)	748
CfoI	GCGC	2 cut(s)	333, 667
Csp6I	GTAC	2 cut(s)	80, 772
CviAII	CATG	5 cut(s)	160, 278, 328, 463, 795
CviJI	RGCY	8 cut(s)	36, 103, 530, 674, 695, 730, 784, 811
CviKI_1	RGCY	8 cut(s)	36, 103, 530, 674, 695, 730, 784, 811
CviQI	GTAC	2 cut(s)	80, 772
DdeI	CTNAG	7 cut(s)	32, 135, 150, 177, 246, 269, 531
DpnI	GATC	9 cut(s)	14, 30, 109, 210, 305, 313, 360, 437, 537
DpnII	GATC	9 cut(s)	12, 28, 107, 208, 303, 311, 358, 435, 535
Eco130I	CCWWGG	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	633, 720
Eco72I	CACGTG	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	5 cut(s)	163, 281, 331, 466, 798
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	5 cut(s)	159, 277, 327, 462, 794
Fnu4HI	GCNGC	2 cut(s)	515, 731
FokI	GGATG	2 cut(s)	493, 500
Fsp4HI	GCNGC	2 cut(s)	515, 731
FspBI	CTAG	1 cut(s)	582
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	2 cut(s)	332, 666
GluI	GCNGC	2 cut(s)	515, 731
HaeII	RGCGCY	1 cut(s)	668
HapII	CCGG	1 cut(s)	394
HhaI	GCGC	2 cut(s)	333, 667
Hin1II	CATG	5 cut(s)	163, 281, 331, 466, 798
Hin6I	GCGC	2 cut(s)	331, 665
HinP1I	GCGC	2 cut(s)	331, 665
HinfI	GANTC	4 cut(s)	141, 292, 443, 737
HpaII	CCGG	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	6 cut(s)	121, 180, 213, 372, 431, 613
Hpy188III	TCNNGA	7 cut(s)	227, 309, 362, 451, 533, 587, 638
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	2 cut(s)	59, 478
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	7 cut(s)	281, 301, 466, 547, 733, 757, 798
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 242, 671, 701
HpyF3I	CTNAG	7 cut(s)	32, 135, 150, 177, 246, 269, 531
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	5 cut(s)	163, 281, 331, 466, 798
HspAI	GCGC	2 cut(s)	331, 665
Kzo9I	GATC	9 cut(s)	12, 28, 107, 208, 303, 311, 358, 435, 535
LmnI	GCTCC	2 cut(s)	41, 692
LpnPI	CCDG	8 cut(s)	122, 137, 407, 464, 518, 635, 693, 743
Lsp1109I	GCAGC	1 cut(s)	717
LweI	GCATC	2 cut(s)	104, 606
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	2 cut(s)	191, 788
MalI	GATC	9 cut(s)	14, 30, 109, 210, 305, 313, 360, 437, 537
MboI	GATC	9 cut(s)	12, 28, 107, 208, 303, 311, 358, 435, 535
MboII	GAAGA	3 cut(s)	22, 306, 626
MflI	RGATCY	2 cut(s)	303, 311
MluCI	AATT	5 cut(s)	238, 383, 571, 627, 644
MlyI	GAGTC	2 cut(s)	135, 301
MnlI	CCTC	6 cut(s)	63, 66, 207, 335, 373, 587
MseI	TTAA	3 cut(s)	419, 551, 558
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	4 cut(s)	33, 242, 671, 701
NdeII	GATC	9 cut(s)	12, 28, 107, 208, 303, 311, 358, 435, 535
NlaIII	CATG	5 cut(s)	163, 281, 331, 466, 798
NlaIV	GGNNCC	1 cut(s)	694
NmuCI	GTSAC	2 cut(s)	191, 788
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	2 cut(s)	163, 798
PciI	ACATGT	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	443, 737
PkrI	GCNGC	2 cut(s)	516, 732
PleI	GAGTC	2 cut(s)	135, 300
PmaCI	CACGTG	1 cut(s)	284
PmlI	CACGTG	1 cut(s)	284
PpsI	GAGTC	2 cut(s)	135, 300
Ppu21I	YACGTR	1 cut(s)	284
PscI	ACATGT	1 cut(s)	159
PspCI	CACGTG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	694
PsuI	RGATCY	2 cut(s)	303, 311
RsaI	GTAC	2 cut(s)	81, 773
RsaNI	GTAC	2 cut(s)	80, 772
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	419, 551, 558
SatI	GCNGC	2 cut(s)	515, 731
Sau3AI	GATC	9 cut(s)	12, 28, 107, 208, 303, 311, 358, 435, 535
SchI	GAGTC	2 cut(s)	135, 301
SfaNI	GCATC	2 cut(s)	104, 606
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	225, 307
SmoI	CTYRAG	2 cut(s)	225, 307
SpeI	ACTAGT	1 cut(s)	581
Sse9I	AATT	5 cut(s)	238, 383, 571, 627, 644
SsiI	CCGC	2 cut(s)	345, 514
SspMI	CTAG	1 cut(s)	582
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	106
TasI	AATT	5 cut(s)	238, 383, 571, 627, 644
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	1 cut(s)	517
TfiI	GAWTC	2 cut(s)	443, 737
Tru1I	TTAA	3 cut(s)	419, 551, 558
Tru9I	TTAA	3 cut(s)	419, 551, 558
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	2 cut(s)	191, 788
TseI	GCWGC	1 cut(s)	730
Tsp45I	GTSAC	2 cut(s)	191, 788
TspDTI	ATGAA	3 cut(s)	17, 405, 497
TspGWI	ACGGA	2 cut(s)	34, 606
TspRI	CASTG	1 cut(s)	703
XapI	RAATTY	3 cut(s)	238, 383, 571
XceI	RCATGY	2 cut(s)	163, 798
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.