Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Forward (+)

20952972 .. 20958994

Gene Structure 6023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGAAGTTGAAGATCAACAAGGCCTGCGATCTCAGCTCCATCTCCGTCCTTCCTCCTCACAACAGGAGATCAAATTCTGTTTCACATGGACCACAAGGTTCGCAGCTTCAGCTTCGATCTCAACCATCAGAGCAGTCATTTTCTCAGGGACTCTCATCTCAGTATGGCATGTTTTCTCAGCTCTCTCAGACGTCTCTTGACGCTTTTACAGATCAGAGGTCTCAAGAACGGGAGAACTCTGTGAAGAAGATTGCTCGCTTACCCCTAATTAGTCATGCCCGTGAAGAGAGTCAAATGCAGATTTCAAGACCTTCCAACAGTCTCACGCGCAAGTGGAGTTCTGCTTCTGGTTCAGATCATCGATGTCAGATCAGTGAGGAATTTGAACATCGTATTGGAATGATGGAAACTTCATTAAGCAAGTTTGGGATGATCTTGGATTCTGTCCAGAGTGACGTTATGCAAGTAAAGAAAGGAACAAAAGAAGTTTCAATGGAGATGGAAGCAGTACAGCAGAAGTTGATGGTTCAAGACAGCTTGCTGCAGTTAATGAATAAGGGGCAAGAAGATTTCAAAGCTAGCCTTGATGAGGGCATCAAATCTATGTCGGAGCAACTGAGCAAAAATGAAAATCAAGATAAATTACAGGAGATGTTCTTAGTGCTTTCAGCCTTACCAGAAAAGATTGAAGCATCCCTCCTGAGTTCACAAAATAATTTACACAGCTCCTTCATCAAGGAAATGCAGAAACTGCTTTGCAGTATCCAAACATGCCAGAATCAGATTACGTACCCCATCCAAACATCCAAAGTGCTATCTGTAGTTTCACCAAAGGCACCAAAGGCTGCTGCCATTCCTGCTATTCCACAAGTAGAGCAAAAGCCTAAGAGGACGTATGTGAGAAAGTATGTGAGAAAGCACAAAGCACCCTCTTTACCTTCATCAAAGGGCGCTGCCTGTCACTCTGTTCCAGAAAAAAGGCCACAGCCTACTAAGAAAGAGTCTGAGAGGCTTAAAAACCCTGCTCTCGATTCCCACTCAACTGTACCTCCAAAGGTTTCTGTTCAAGCAGCTGTAGTTACAACAACAGAAACAGGAGGCTGGAAGACTGTAAAGGCGGGAAAAGCTACCTCTATTGATAGGGTGCCCCAGAAAGCACAAAAACATAATGGAATTGCCTTGGTTAAACAGGAAAGAGGAGGTAGAATTATCATTGAATCAGATGAGGACATTGATGGAGGATTTTCATTCTTACTTGACGAGAAAGAAACAGGTGATGATCAAAAATTGCTCTCGAACTGTGCTGTGGTTTCAGATGCTCGATGCTTGAAGTCTGCTCCTCTCATGTGCTGTGTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

453

Amino Acids

50.09

Weight (kDa)

9.21

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AccB1I	GGYRCC	2 cut(s)	835, 1144
AccII	CGCG	1 cut(s)	328
AciI	CCGC	1 cut(s)	1118
AcsI	RAATTY	2 cut(s)	73, 380
AcuI	CTGAAG	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	3 cut(s)	510, 791, 1047
AfiI	CCNNNNNNNGG	1 cut(s)	589
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	9 cut(s)	36, 106, 112, 181, 537, 578, 726, 1073, 1127
AluI	AGCT	9 cut(s)	36, 106, 112, 181, 537, 578, 726, 1073, 1127
Alw26I	GTCTC	3 cut(s)	198, 225, 326
AlwNI	CAGNNNCTG	1 cut(s)	751
AoxI	GGCC	2 cut(s)	21, 980
ApeKI	GCWGC	6 cut(s)	103, 541, 845, 848, 953, 1070
ApoI	RAATTY	2 cut(s)	73, 380
AspLEI	GCGC	2 cut(s)	330, 953
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	819, 1286
AsuNHI	GCTAGC	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	1149
BanI	GGYRCC	2 cut(s)	835, 1144
BbsI	GAAGAC	1 cut(s)	1112
BbvI	GCAGC	6 cut(s)	115, 528, 832, 835, 940, 1082
BccI	CCATC	7 cut(s)	47, 133, 397, 493, 517, 803, 1229
BciVI	GTATCC	1 cut(s)	773
BclI	TGATCA	1 cut(s)	1279
BcoDI	GTCTC	3 cut(s)	198, 225, 326
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	3 cut(s)	542, 819, 1074
BfoI	RGCGCY	1 cut(s)	954
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	6 cut(s)	104, 542, 846, 849, 954, 1071
BlsI	GCNGC	6 cut(s)	105, 543, 847, 850, 955, 1072
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	837, 1146
BmsI	GCATC	4 cut(s)	603, 701, 1306, 1313
BmtI	GCTAGC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	1112
BpuEI	CTTGAG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	361
BsaAI	YACGTR	1 cut(s)	789
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	1179
BsaXI	ACNNNNNCTCC	2 cut(s)	1033, 1063
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	1179
BseGI	GGATG	4 cut(s)	435, 692, 795, 803
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMII	CTCAG	8 cut(s)	46, 158, 173, 191, 200, 608, 692, 996
BseRI	GAGGAG	3 cut(s)	45, 1212, 1329
BseSI	GKGCMC	1 cut(s)	1149
BseXI	GCAGC	6 cut(s)	115, 528, 832, 835, 940, 1082
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	23, 982
BshNI	GGYRCC	2 cut(s)	835, 1144
BshVI	ATCGAT	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	3 cut(s)	198, 225, 326
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	23, 982
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	1149
Bsp143I	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 369, 432, 1279
BspACI	CCGC	1 cut(s)	1118
BspANI	GGCC	2 cut(s)	23, 982
BspCNI	CTCAG	8 cut(s)	45, 157, 172, 190, 199, 609, 693, 997
BspDI	ATCGAT	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	837, 1146
BspMAI	CTGCAG	1 cut(s)	546
BspOI	GCTAGC	1 cut(s)	582
BspT107I	GGYRCC	2 cut(s)	835, 1144
BspTNI	GGTCTC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	1179
BssMI	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 369, 432, 1279
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	1179
Bst4CI	ACNGT	4 cut(s)	320, 1045, 1111, 1301
Bst6I	CTCTTC	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	751
BstBAI	YACGTR	1 cut(s)	789
BstC8I	GCNNGC	4 cut(s)	25, 256, 539, 580
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	4 cut(s)	435, 692, 795, 803
BstFNI	CGCG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	954
BstHHI	GCGC	2 cut(s)	330, 953
BstKTI	GATC	9 cut(s)	15, 31, 71, 119, 214, 358, 372, 435, 1282
BstMAI	GTCTC	3 cut(s)	198, 225, 326
BstMBI	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 369, 432, 1279
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 109, 751, 842, 857, 1124
BstNSI	RCATGY	2 cut(s)	172, 774
BstSFI	CTRYAG	3 cut(s)	542, 819, 1074
BstSLI	GKGCMC	1 cut(s)	1149
BstSNI	TACGTA	1 cut(s)	789
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	6 cut(s)	115, 528, 832, 835, 940, 1082
BstV2I	GAAGAC	1 cut(s)	1112
Bsu15I	ATCGAT	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	2 cut(s)	23, 982
BsuTUI	ATCGAT	1 cut(s)	361
BtsCI	GGATG	4 cut(s)	435, 692, 795, 803
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	4 cut(s)	25, 256, 539, 580
CaiI	CAGNNNCTG	1 cut(s)	751
CfoI	GCGC	2 cut(s)	330, 953
Cfr13I	GGNCC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	509, 790, 1046
CviAII	CATG	5 cut(s)	86, 169, 275, 771, 1345
CviQI	GTAC	3 cut(s)	509, 790, 1046
DpnI	GATC	9 cut(s)	14, 30, 70, 118, 213, 357, 371, 434, 1281
DpnII	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 369, 432, 1279
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco105I	TACGTA	1 cut(s)	789
Eco130I	CCWWGG	1 cut(s)	1179
Eco147I	AGGCCT	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	92
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoT14I	CCWWGG	1 cut(s)	1179
ErhI	CCWWGG	1 cut(s)	1179
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	5 cut(s)	89, 172, 278, 774, 1348
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	5 cut(s)	85, 168, 274, 770, 1344
FauI	CCCGC	1 cut(s)	1111
FbaI	TGATCA	1 cut(s)	1279
Fnu4HI	GCNGC	6 cut(s)	104, 542, 846, 849, 954, 1071
FokI	GGATG	4 cut(s)	442, 679, 782, 790
Fsp4HI	GCNGC	6 cut(s)	104, 542, 846, 849, 954, 1071
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	2 cut(s)	329, 952
GluI	GCNGC	6 cut(s)	104, 542, 846, 849, 954, 1071
HaeII	RGCGCY	1 cut(s)	954
HaeIII	GGCC	2 cut(s)	23, 982
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	330, 953
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	5 cut(s)	89, 172, 278, 774, 1348
Hin6I	GCGC	2 cut(s)	328, 951
HinP1I	GCGC	2 cut(s)	328, 951
HinfI	GANTC	7 cut(s)	150, 289, 440, 778, 1001, 1031, 1217
HphI	GGTGA	2 cut(s)	819, 1286
Hpy166II	GTNNAC	1 cut(s)	707
Hpy8I	GTNNAC	1 cut(s)	707
HpyAV	CCTTC	4 cut(s)	59, 321, 739, 948
HpyCH4III	ACNGT	4 cut(s)	320, 1045, 1111, 1301
HpyCH4IV	ACGT	4 cut(s)	191, 456, 788, 893
HpyCH4V	TGCA	5 cut(s)	298, 463, 544, 745, 759
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 109, 751, 842, 857, 1124
HpySE526I	ACGT	4 cut(s)	191, 456, 788, 893
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	5 cut(s)	89, 172, 278, 774, 1348
HspAI	GCGC	2 cut(s)	328, 951
Ksp22I	TGATCA	1 cut(s)	1279
Kzo9I	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 369, 432, 1279
LmnI	GCTCC	4 cut(s)	41, 610, 731, 1342
Lsp1109I	GCAGC	6 cut(s)	115, 528, 832, 835, 940, 1082
LweI	GCATC	4 cut(s)	603, 701, 1306, 1313
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	4 cut(s)	191, 456, 788, 893
MaeIII	GTNAC	3 cut(s)	452, 959, 1078
MalI	GATC	9 cut(s)	14, 30, 70, 118, 213, 357, 371, 434, 1281
MboI	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 369, 432, 1279
MboII	GAAGA	6 cut(s)	22, 256, 259, 296, 578, 1117
MhlI	GDGCHC	1 cut(s)	1149
MluCI	AATT	8 cut(s)	73, 267, 380, 641, 715, 1173, 1206, 1286
MlyI	GAGTC	3 cut(s)	144, 298, 1010
MmeI	TCCRAC	2 cut(s)	339, 588
MseI	TTAA	4 cut(s)	416, 548, 1014, 1185
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	1073
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	6 cut(s)	33, 109, 751, 842, 857, 1124
NdeII	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 369, 432, 1279
NheI	GCTAGC	1 cut(s)	578
NlaIII	CATG	5 cut(s)	89, 172, 278, 774, 1348
NlaIV	GGNNCC	2 cut(s)	837, 1146
NmuCI	GTSAC	2 cut(s)	452, 959
NspI	RCATGY	2 cut(s)	172, 774
PceI	AGGCCT	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	440, 778, 1031, 1217
PkrI	GCNGC	6 cut(s)	105, 543, 847, 850, 955, 1072
PleI	GAGTC	3 cut(s)	144, 297, 1009
PpsI	GAGTC	3 cut(s)	144, 297, 1009
Ppu21I	YACGTR	1 cut(s)	789
PspN4I	GGNNCC	2 cut(s)	837, 1146
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	1073
RsaI	GTAC	3 cut(s)	510, 791, 1047
RsaNI	GTAC	3 cut(s)	509, 790, 1046
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	416, 548, 1014, 1185
SatI	GCNGC	6 cut(s)	104, 542, 846, 849, 954, 1071
Sau3AI	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 369, 432, 1279
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	3 cut(s)	144, 298, 1010
SduI	GDGCHC	1 cut(s)	1149
SfaNI	GCATC	4 cut(s)	603, 701, 1306, 1313
SfcI	CTRYAG	3 cut(s)	542, 819, 1074
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SnaBI	TACGTA	1 cut(s)	789
Sse9I	AATT	8 cut(s)	73, 267, 380, 641, 715, 1173, 1206, 1286
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	1118
SspMI	CTAG	1 cut(s)	579
StuI	AGGCCT	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	1179
TaaI	ACNGT	4 cut(s)	320, 1045, 1111, 1301
TaiI	ACGT	4 cut(s)	194, 459, 791, 896
TaqI	TCGA	5 cut(s)	115, 361, 1029, 1295, 1321
TasI	AATT	8 cut(s)	73, 267, 380, 641, 715, 1173, 1206, 1286
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	4 cut(s)	440, 778, 1031, 1217
Tru1I	TTAA	4 cut(s)	416, 548, 1014, 1185
Tru9I	TTAA	4 cut(s)	416, 548, 1014, 1185
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	452, 959
TseI	GCWGC	6 cut(s)	103, 541, 845, 848, 953, 1070
Tsp45I	GTSAC	2 cut(s)	452, 959
TspDTI	ATGAA	7 cut(s)	17, 402, 566, 642, 721, 930, 1236
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	2 cut(s)	73, 380
XceI	RCATGY	2 cut(s)	172, 774
XspI	CTAG	1 cut(s)	579
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.