Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Forward (+)

2431903 .. 2432568

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0015600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGACAAGGTTGACTGCACGGGTCCAAAAGGTGAGGGATGAGCTCGAGCAGCTGCTGGATGATGATGATGATATGGCCGACCTTTACTTGTCAAGAAAGTTGGCAGGTGCATGTTCACCAGTTAGTGCCTCTGGTCCTCCCAATTGGTATCCTGTCTCCCCCACCATAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

57

Amino Acids

6.26

Weight (kDa)

4.47

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	167
AluBI	AGCT	2 cut(s)	43, 52
AluI	AGCT	2 cut(s)	43, 52
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	160
AlwNI	CAGNNNCTG	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	49, 52
AspS9I	GGNCC	2 cut(s)	22, 134
AsuHPI	GGTGA	2 cut(s)	43, 108
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	22, 134
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	39, 61
BciVI	GTATCC	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	50, 53
BlsI	GCNGC	2 cut(s)	51, 54
Bme18I	GGWCC	2 cut(s)	22, 134
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	22, 134
BmiI	GGNNCC	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	119
BseGI	GGATG	2 cut(s)	43, 64
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	39, 61
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	23
BspMI	ACCTGC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	43, 64
BstMAI	GTCTC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	39, 61
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	43, 64
BveI	ACCTGC	1 cut(s)	95
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	22, 134
CviAII	CATG	1 cut(s)	111
CviJI	RGCY	3 cut(s)	43, 52, 77
CviKI_1	RGCY	3 cut(s)	43, 52, 77
EaeI	YGGCCR	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	22, 134
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	1 cut(s)	114
FaiI	YATR	3 cut(s)	74, 112, 167
FatI	CATG	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	50, 53
FokI	GGATG	2 cut(s)	50, 71
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	50, 53
GluI	GCNGC	2 cut(s)	50, 53
HaeIII	GGCC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HphI	GGTGA	2 cut(s)	43, 108
Hpy166II	GTNNAC	2 cut(s)	12, 116
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	2 cut(s)	12, 116
HpyCH4V	TGCA	2 cut(s)	17, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	114
LpnPI	CCDG	5 cut(s)	41, 90, 117, 132, 165
Lsp1109I	GCAGC	2 cut(s)	39, 61
MfeI	CAATTG	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	142
MnlI	CCTC	3 cut(s)	27, 139, 147
MseI	TTAA	1 cut(s)	172
MspA1I	CMGCKG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	114
NlaIV	GGNNCC	1 cut(s)	23
NspI	RCATGY	1 cut(s)	114
PaeR7I	CTCGAG	1 cut(s)	44
PaqCI	CACCTGC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	51, 54
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	23
PspPI	GGNCC	2 cut(s)	22, 134
PspXI	VCTCGAGB	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	52
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	172
SatI	GCNGC	2 cut(s)	50, 53
Sau96I	GGNCC	2 cut(s)	22, 134
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	7 cut(s)	11, 33, 45, 54, 84, 109, 172
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	22, 134
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	142
SstI	GAGCTC	1 cut(s)	45
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	172
Tru9I	TTAA	1 cut(s)	172
TseI	GCWGC	2 cut(s)	49, 52
VpaK11BI	GGWCC	2 cut(s)	22, 134
XceI	RCATGY	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.