Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Reverse (-)

16461420 .. 16465768

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1061000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAAGTTGAAGATCAACAAGGCCTGCGATGTCAGCTCCATCTCAGTCCTTCCTCCTCACACAAGACCAAATGCTGTACCAAATGGACCACAAGCAGCGCAGCTTCGCTCTCAACCATCAGAGCAGTCATTTTCTCAGGGACTCTCATCTCAGCATAACATGTTTTCTCAACTCTCCCAGAACTCTCAGTGTGATGTTCTCATGAACGATCAGAGGTTTGGCTCTCAAGAACGAGAGAATTCTGTGAAGAAAGTTGCTTACTTACCCCCAATTAGTCATGCACGTGACGAAAGTCAATTGCAGATCTCAAGATCTTCCACCAACCTCATGCGCAAGTGGAGTTCCGCTTCTGTTTCAGATCATCGATGTCAGAATAGTGTGGAATTTGAACACCGGATTGGAGTGATGGAAACTTCATTAAATAAGTTTGGAATGATCTTGGATTCTGTCCAGCGTGATGTAATGCAAGTAAAAAAAGGGATGAAGGAAGTTTCTATGGAGATGGAAGCAATGCGGCAGAAATTGATAGCGCAGGATAATTCATTGCAATTAACGATTAAGGGGCAAGAAGACTTCAAAACTAGCCTTGAAGGAGGCATCAAGTCTATTTCTGAAGAAGTCAGCAAAAATACCTATCAAGACAAATTACAGGAGATTTTCTTGGCGCTTTCAGCTTTACCAGAAAAGATAGGAGTCGCTGAAGCAGCTTTACTGAAATCACAAAACAAGCTGCATGACTCCTTCATCAAGGAAATGCAGAAGTTGCTTTGCACCAAGAATCAGAGTACTTCCACCCAAAATTGTGAAGTACCCACAATACTTCCACCACAGGGTTCTGCATATCCTGCCCTTCTACAAGGAAAGCCACAGCCTATTAAAAGTTCAGCTGTGCCTCCCAAGGTTGGTGTGCAAGCAGTTGTAGTTCCAAAGATAGAAACAGGAGGCTGGAAGTCTGTAAAGGGGGAAACATCTACCTTGAGCAATAATGGGTTCCGGCAAGTACAAAAGCGTAGCAGATTTACTTCCATTCCACAGGAAAGGGAATGCAGAGTCATTATTGAATCAGACGAGGAGATTGATGGAGCTTTTTCCTGCTTGTTTGGCGAGAAGGAAACAGATATGGCCGAGGAGGTAATGGAAGAGACAGAAAGGATCTTGAGAAGGGCAAGAAGGCGAAAGAGAAAATGCAGCAACACTATAATTATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

404

Amino Acids

45.1

Weight (kDa)

8.98

Isoelectric Point (pI)

58.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
AciI	CCGC	2 cut(s)	345, 514
AclWI	GGATC	1 cut(s)	1160
AcoI	YGGCCR	1 cut(s)	1122
AcsI	RAATTY	2 cut(s)	238, 383
AcuI	CTGAAG	2 cut(s)	633, 720
AcvI	CACGTG	1 cut(s)	284
AfaI	GTAC	4 cut(s)	78, 787, 810, 1002
AfiI	CCNNNNNNNGG	2 cut(s)	830, 902
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	5 cut(s)	10, 389, 577, 590, 1061
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	7 cut(s)	36, 103, 674, 707, 730, 887, 1085
AluI	AGCT	7 cut(s)	36, 103, 674, 707, 730, 887, 1085
Alw26I	GTCTC	1 cut(s)	1136
AlwI	GGATC	1 cut(s)	1160
AoxI	GGCC	2 cut(s)	21, 1122
ApeKI	GCWGC	5 cut(s)	95, 100, 704, 730, 1188
ApoI	RAATTY	2 cut(s)	238, 383
AspLEI	GCGC	4 cut(s)	100, 333, 532, 667
AspS9I	GGNCC	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	86
BarI	GAAGNNNNNNTAC	2 cut(s)	693, 725
BbrPI	CACGTG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	576
BbvI	GCAGC	5 cut(s)	107, 112, 716, 717, 1200
BccI	CCATC	5 cut(s)	47, 124, 400, 496, 1073
BcoDI	GTCTC	1 cut(s)	1136
BfaI	CTAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	668
BglII	AGATCT	2 cut(s)	303, 311
BisI	GCNGC	6 cut(s)	96, 101, 515, 705, 731, 1189
BlsI	GCNGC	6 cut(s)	97, 102, 516, 706, 732, 1190
BmcAI	AGTACT	1 cut(s)	787
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	992
BmsI	GCATC	1 cut(s)	606
BoxI	GACNNNNGTC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	576
BpuEI	CTTGAG	4 cut(s)	210, 292, 997, 1177
Bsa29I	ATCGAT	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	897, 1125
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	2 cut(s)	830, 902
Bse3DI	GCAATG	2 cut(s)	516, 542
BseCI	ATCGAT	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	897, 1125
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	2 cut(s)	830, 902
BseMI	GCAATG	2 cut(s)	516, 542
BseMII	CTCAG	4 cut(s)	57, 149, 164, 200
BseRI	GAGGAG	3 cut(s)	45, 1085, 1142
BseXI	GCAGC	5 cut(s)	107, 112, 716, 717, 1200
BshFI	GGCC	2 cut(s)	23, 1124
BshVI	ATCGAT	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	394, 994
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	830, 902
BsmAI	GTCTC	1 cut(s)	1136
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	1049
BsnI	GGCC	2 cut(s)	23, 1124
Bsp143I	GATC	7 cut(s)	12, 208, 303, 311, 358, 435, 1152
BspACI	CCGC	2 cut(s)	345, 514
BspANI	GGCC	2 cut(s)	23, 1124
BspCNI	CTCAG	4 cut(s)	56, 148, 163, 199
BspDI	ATCGAT	1 cut(s)	364
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	992
BspPI	GGATC	1 cut(s)	1160
BsrDI	GCAATG	2 cut(s)	516, 542
BssECI	CCNNGG	2 cut(s)	897, 1125
BssMI	GATC	7 cut(s)	12, 208, 303, 311, 358, 435, 1152
BssT1I	CCWWGG	1 cut(s)	897
Bst6I	CTCTTC	1 cut(s)	1134
BstAPI	GCANNNNNTGC	2 cut(s)	763, 845
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	25, 912
BstDEI	CTNAG	4 cut(s)	43, 135, 150, 186
BstF5I	GGATG	1 cut(s)	486
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	4 cut(s)	100, 333, 532, 667
BstKTI	GATC	7 cut(s)	15, 211, 306, 314, 361, 438, 1155
BstMAI	GTCTC	1 cut(s)	1136
BstMBI	GATC	7 cut(s)	12, 208, 303, 311, 358, 435, 1152
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 671, 704, 763, 845, 1101
BstNSI	RCATGY	1 cut(s)	163
BstPAI	GACNNNNGTC	1 cut(s)	291
BstV1I	GCAGC	5 cut(s)	107, 112, 716, 717, 1200
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	3 cut(s)	303, 311, 1152
BstYI	RGATCY	3 cut(s)	303, 311, 1152
Bsu15I	ATCGAT	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	23, 1124
BsuTUI	ATCGAT	1 cut(s)	364
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	25, 912
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	4 cut(s)	100, 333, 532, 667
Cfr13I	GGNCC	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	364
Csp6I	GTAC	4 cut(s)	77, 786, 809, 1001
CviAII	CATG	5 cut(s)	160, 202, 278, 328, 734
CviQI	GTAC	4 cut(s)	77, 786, 809, 1001
DdeI	CTNAG	4 cut(s)	43, 135, 150, 186
DpnI	GATC	7 cut(s)	14, 210, 305, 313, 360, 437, 1154
DpnII	GATC	7 cut(s)	12, 208, 303, 311, 358, 435, 1152
EaeI	YGGCCR	1 cut(s)	1122
Eam1104I	CTCTTC	1 cut(s)	1134
EarI	CTCTTC	1 cut(s)	1134
Eco130I	CCWWGG	1 cut(s)	897
Eco147I	AGGCCT	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	2 cut(s)	633, 720
Eco72I	CACGTG	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	897
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	5 cut(s)	163, 205, 281, 331, 737
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	5 cut(s)	159, 201, 277, 327, 733
Fnu4HI	GCNGC	6 cut(s)	96, 101, 515, 705, 731, 1189
FokI	GGATG	1 cut(s)	493
Fsp4HI	GCNGC	6 cut(s)	96, 101, 515, 705, 731, 1189
FspBI	CTAG	1 cut(s)	582
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	4 cut(s)	99, 332, 531, 666
GluI	GCNGC	6 cut(s)	96, 101, 515, 705, 731, 1189
HaeII	RGCGCY	1 cut(s)	668
HaeIII	GGCC	2 cut(s)	23, 1124
HapII	CCGG	2 cut(s)	394, 994
HhaI	GCGC	4 cut(s)	100, 333, 532, 667
Hin1II	CATG	5 cut(s)	163, 205, 281, 331, 737
Hin6I	GCGC	4 cut(s)	98, 331, 530, 665
HinP1I	GCGC	4 cut(s)	98, 331, 530, 665
HinfI	GANTC	7 cut(s)	141, 443, 693, 737, 778, 1050, 1061
HpaII	CCGG	2 cut(s)	394, 994
Hpy188I	TCNGA	7 cut(s)	121, 213, 358, 372, 613, 783, 1066
Hpy188III	TCNNGA	5 cut(s)	202, 227, 309, 638, 1156
HpyAV	CCTTC	8 cut(s)	59, 478, 584, 751, 860, 1102, 1155, 1164
HpyCH4IV	ACGT	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 671, 704, 763, 845, 1101
HpyF3I	CTNAG	4 cut(s)	43, 135, 150, 186
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	5 cut(s)	163, 205, 281, 331, 737
HspAI	GCGC	4 cut(s)	98, 331, 530, 665
Kzo9I	GATC	7 cut(s)	12, 208, 303, 311, 358, 435, 1152
LmnI	GCTCC	2 cut(s)	41, 1082
Lsp1109I	GCAGC	5 cut(s)	107, 112, 716, 717, 1200
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	7 cut(s)	14, 210, 305, 313, 360, 437, 1154
MboI	GATC	7 cut(s)	12, 208, 303, 311, 358, 435, 1152
MboII	GAAGA	6 cut(s)	22, 259, 306, 581, 626, 1151
MfeI	CAATTG	1 cut(s)	296
MflI	RGATCY	3 cut(s)	303, 311, 1152
MlyI	GAGTC	4 cut(s)	135, 702, 731, 1059
MseI	TTAA	5 cut(s)	419, 551, 558, 876, 1206
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	887
MspI	CCGG	2 cut(s)	394, 994
MunI	CAATTG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	1049
MwoI	GCNNNNNNNGC	6 cut(s)	33, 671, 704, 763, 845, 1101
NdeII	GATC	7 cut(s)	12, 208, 303, 311, 358, 435, 1152
NlaIII	CATG	5 cut(s)	163, 205, 281, 331, 737
NlaIV	GGNNCC	1 cut(s)	992
NmeAIII	GCCGAG	1 cut(s)	1150
NmuCI	GTSAC	1 cut(s)	284
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	1 cut(s)	163
PagI	TCATGA	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	23
PciI	ACATGT	1 cut(s)	159
PctI	GAATGC	1 cut(s)	1049
PfeI	GAWTC	3 cut(s)	443, 778, 1061
PkrI	GCNGC	6 cut(s)	97, 102, 516, 706, 732, 1190
PleI	GAGTC	4 cut(s)	135, 701, 731, 1058
PmaCI	CACGTG	1 cut(s)	284
PmlI	CACGTG	1 cut(s)	284
PpsI	GAGTC	4 cut(s)	135, 701, 731, 1058
Ppu21I	YACGTR	1 cut(s)	284
PscI	ACATGT	1 cut(s)	159
PshAI	GACNNNNGTC	1 cut(s)	291
PspCI	CACGTG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	992
PspPI	GGNCC	1 cut(s)	86
PsuI	RGATCY	3 cut(s)	303, 311, 1152
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	4 cut(s)	78, 787, 810, 1002
RsaNI	GTAC	4 cut(s)	77, 786, 809, 1001
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	5 cut(s)	419, 551, 558, 876, 1206
SatI	GCNGC	6 cut(s)	96, 101, 515, 705, 731, 1189
Sau3AI	GATC	7 cut(s)	12, 208, 303, 311, 358, 435, 1152
Sau96I	GGNCC	1 cut(s)	86
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	4 cut(s)	135, 702, 731, 1059
SfaNI	GCATC	1 cut(s)	606
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	4 cut(s)	225, 307, 976, 1156
SmoI	CTYRAG	4 cut(s)	225, 307, 976, 1156
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	345, 514
SspMI	CTAG	1 cut(s)	582
StuI	AGGCCT	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	897
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	364
TatI	WGTACW	2 cut(s)	785, 1000
TauI	GCSGC	1 cut(s)	517
TfiI	GAWTC	3 cut(s)	443, 778, 1061
Tru1I	TTAA	5 cut(s)	419, 551, 558, 876, 1206
Tru9I	TTAA	5 cut(s)	419, 551, 558, 876, 1206
TscAI	CASTG	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	5 cut(s)	95, 100, 704, 730, 1188
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	6 cut(s)	17, 218, 405, 497, 531, 733
TspRI	CASTG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	2 cut(s)	238, 383
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	582
ZrmI	AGTACT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.