Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004135.1

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Forward (+)

105006 .. 110583

Gene Structure 5578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004135.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgaagttgaagatcaacaaggcctgcgatctcagctccatctccgtccttcctcctcacaacaggagatccaattctgtttcacatggaccacaaggttcgcagcttcaacttcgatctcaaccatcagagcagtcattttctcagggactctcatctcagtatggcatgttttctcagctctctcagacgtctcttgacgcttttacagatcagaggtctcaagaacgggagaacactgtgaagaagattgctcgcttacccctaattagtcatgcccgtgacgagagtcaaatgcagatttcaagaccttccaacagtctcacgcacaagtggagttctgcttctggttcagatcatcgatccttaccagaaaagattgaagcatccatcctgagttcacaaaataatttacacagctccttcatcaaggaaatgcagaaactgctttgcagtatccaaacatgccagaatcagattatgtaccccatccaaacatccaaagtgctatctgtagtttcaccaaaggcaccaaaggctgctgccattcctgctattccacaagtagagcaaaagcctaagaggacgtatgtgagaaagtatgtgaggaagtacaaagcacaagcaccctctttaccttcgtcaaagggcgctgcctgtcactctgttccagaaaaaaggacacagcctattaagaaagagttcgagaggcttaaaaaccctgctcttgattcccactcaactgtacctccaaaggtttctgttcaagcagctgtagttacaacgacagaaacagaaggctggaagactgtaaaggcgggaaaagcaacctctattgatagggtgccccagaaagcacaaaaacataatggaattaccttggttaaacaggaaagaggaggtagaattatcattgaatcagatgaggacattgatggaggattttcattcttacttgacgagaaagaaacaggtgatatgatcaaggagatcccactattgtccggcaattctcagcacggccccgtactcagaggcaagtctctaataggtgtctttgaatcgtttctatacaataacgtattaaaggtcaaggctgtcaagggccttaccatccctaaggctttaggcctgagaaaagttcaatgcctagcttggtccctctatcctgttcctttcacaaaagctagatatcgtgtctgtcggtgcgagcccacacgtgggaagttgctacaaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

413

Amino Acids

45.76

Weight (kDa)

9.93

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AccB1I	GGYRCC	2 cut(s)	529, 844
AciI	CCGC	1 cut(s)	818
AclWI	GGATC	3 cut(s)	63, 357, 985
AcvI	CACGTG	1 cut(s)	1220
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	4 cut(s)	485, 614, 747, 1029
AfiI	CCNNNNNNNGG	2 cut(s)	1220, 1221
AflIII	ACRYGT	1 cut(s)	1217
AgsI	TTSAA	8 cut(s)	10, 110, 306, 383, 767, 917, 1061, 1145
AluBI	AGCT	7 cut(s)	36, 106, 181, 420, 773, 1154, 1187
AluI	AGCT	7 cut(s)	36, 106, 181, 420, 773, 1154, 1187
Alw26I	GTCTC	4 cut(s)	198, 225, 326, 1047
AlwI	GGATC	3 cut(s)	63, 357, 985
AlwNI	CAGNNNCTG	1 cut(s)	445
AoxI	GGCC	4 cut(s)	21, 1021, 1105, 1129
ApeKI	GCWGC	5 cut(s)	103, 539, 542, 653, 770
Asp700I	GAANNNNTTC	2 cut(s)	701, 1065
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	4 cut(s)	89, 1022, 1105, 1158
AsuHPI	GGTGA	2 cut(s)	513, 986
AvaII	GGWCC	2 cut(s)	89, 1158
AxyI	CCTNAGG	1 cut(s)	1119
BaeGI	GKGCMC	1 cut(s)	849
BanI	GGYRCC	2 cut(s)	529, 844
BanII	GRGCYC	1 cut(s)	1215
BbrPI	CACGTG	1 cut(s)	1220
BbsI	GAAGAC	1 cut(s)	812
BbvI	GCAGC	5 cut(s)	115, 526, 529, 640, 782
BccI	CCATC	6 cut(s)	47, 133, 398, 497, 929, 1121
BceAI	ACGGC	1 cut(s)	1036
BciVI	GTATCC	1 cut(s)	467
BclI	TGATCA	1 cut(s)	981
BcoDI	GTCTC	4 cut(s)	198, 225, 326, 1047
BfaI	CTAG	2 cut(s)	1151, 1188
BfmI	CTRYAG	2 cut(s)	513, 774
BfoI	RGCGCY	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	5 cut(s)	104, 540, 543, 654, 771
BlsI	GCNGC	5 cut(s)	105, 541, 544, 655, 772
Bme18I	GGWCC	2 cut(s)	89, 1158
BmgT120I	GGNCC	4 cut(s)	89, 1022, 1105, 1158
BmiI	GGNNCC	4 cut(s)	531, 846, 1024, 1160
BmsI	GCATC	1 cut(s)	395
BoxI	GACNNNNGTC	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	812
BpuEI	CTTGAG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	361
BsaAI	YACGTR	1 cut(s)	1220
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	879
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bsc4I	CCNNNNNNNGG	2 cut(s)	1220, 1221
Bse21I	CCTNAGG	1 cut(s)	1119
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	879
BseGI	GGATG	5 cut(s)	386, 390, 489, 497, 1113
BseLI	CCNNNNNNNGG	2 cut(s)	1220, 1221
BseMII	CTCAG	9 cut(s)	46, 158, 173, 191, 200, 386, 1028, 1045, 1124
BseRI	GAGGAG	2 cut(s)	45, 912
BseSI	GKGCMC	1 cut(s)	849
BseXI	GCAGC	5 cut(s)	115, 526, 529, 640, 782
BshFI	GGCC	4 cut(s)	23, 1023, 1107, 1131
BshNI	GGYRCC	2 cut(s)	529, 844
BshVI	ATCGAT	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	1005
BslFI	GGGAC	2 cut(s)	162, 1144
BslI	CCNNNNNNNGG	2 cut(s)	1220, 1221
BsmAI	GTCTC	4 cut(s)	198, 225, 326, 1047
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	162, 1144
BsnI	GGCC	4 cut(s)	23, 1023, 1107, 1131
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	849, 1215
Bsp143I	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 362, 981, 990
BspACI	CCGC	1 cut(s)	818
BspANI	GGCC	4 cut(s)	23, 1023, 1107, 1131
BspCNI	CTCAG	9 cut(s)	45, 157, 172, 190, 199, 387, 1027, 1044, 1125
BspDI	ATCGAT	1 cut(s)	361
BspLI	GGNNCC	4 cut(s)	531, 846, 1024, 1160
BspPI	GGATC	3 cut(s)	63, 357, 985
BspT107I	GGYRCC	2 cut(s)	529, 844
BspTNI	GGTCTC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	879
BssMI	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 362, 981, 990
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	879
Bst4CI	ACNGT	4 cut(s)	241, 320, 745, 811
BstACI	GRCGYC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstBAI	YACGTR	1 cut(s)	1220
BstC8I	GCNNGC	3 cut(s)	25, 256, 1211
BstF5I	GGATG	5 cut(s)	386, 390, 489, 497, 1113
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	9 cut(s)	15, 31, 71, 119, 214, 358, 365, 984, 993
BstMAI	GTCTC	4 cut(s)	198, 225, 326, 1047
BstMBI	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 362, 981, 990
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 445, 536, 551, 824
BstNSI	RCATGY	2 cut(s)	172, 468
BstPAI	GACNNNNGTC	1 cut(s)	288
BstSFI	CTRYAG	2 cut(s)	513, 774
BstSLI	GKGCMC	1 cut(s)	849
BstV1I	GCAGC	5 cut(s)	115, 526, 529, 640, 782
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	2 cut(s)	68, 990
BstYI	RGATCY	2 cut(s)	68, 990
Bsu15I	ATCGAT	1 cut(s)	361
Bsu36I	CCTNAGG	1 cut(s)	1119
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	4 cut(s)	23, 1023, 1107, 1131
BsuTUI	ATCGAT	1 cut(s)	361
BtsCI	GGATG	5 cut(s)	386, 390, 489, 497, 1113
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	3 cut(s)	25, 256, 1211
CaiI	CAGNNNCTG	1 cut(s)	445
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	4 cut(s)	89, 1022, 1105, 1158
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	4 cut(s)	484, 613, 746, 1028
CviAII	CATG	4 cut(s)	86, 169, 275, 465
CviQI	GTAC	4 cut(s)	484, 613, 746, 1028
DpnI	GATC	9 cut(s)	14, 30, 70, 118, 213, 357, 364, 983, 992
DpnII	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 362, 981, 990
Eco130I	CCWWGG	1 cut(s)	879
Eco147I	AGGCCT	2 cut(s)	23, 1131
Eco24I	GRGCYC	1 cut(s)	1215
Eco31I	GGTCTC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	1193
Eco47I	GGWCC	2 cut(s)	89, 1158
Eco72I	CACGTG	1 cut(s)	1220
Eco81I	CCTNAGG	1 cut(s)	1119
EcoO109I	RGGNCCY	1 cut(s)	1105
EcoRV	GATATC	1 cut(s)	1193
EcoT14I	CCWWGG	1 cut(s)	879
EcoT38I	GRGCYC	1 cut(s)	1215
ErhI	CCWWGG	1 cut(s)	879
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	4 cut(s)	89, 172, 278, 468
FaqI	GGGAC	2 cut(s)	162, 1144
FatI	CATG	4 cut(s)	85, 168, 274, 464
FauI	CCCGC	1 cut(s)	811
FbaI	TGATCA	1 cut(s)	981
Fnu4HI	GCNGC	5 cut(s)	104, 540, 543, 654, 771
FokI	GGATG	5 cut(s)	373, 377, 476, 484, 1100
FriOI	GRGCYC	1 cut(s)	1215
Fsp4HI	GCNGC	5 cut(s)	104, 540, 543, 654, 771
FspBI	CTAG	2 cut(s)	1151, 1188
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	5 cut(s)	104, 540, 543, 654, 771
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	4 cut(s)	23, 1023, 1107, 1131
HapII	CCGG	1 cut(s)	1005
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	653
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	4 cut(s)	89, 172, 278, 468
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HinfI	GANTC	6 cut(s)	150, 289, 472, 731, 917, 1061
HpaII	CCGG	1 cut(s)	1005
HphI	GGTGA	2 cut(s)	513, 986
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	7 cut(s)	130, 189, 216, 355, 477, 922, 1034
Hpy188III	TCNNGA	7 cut(s)	197, 224, 306, 394, 671, 706, 728
Hpy8I	GTNNAC	1 cut(s)	401
HpyAV	CCTTC	5 cut(s)	59, 321, 433, 648, 791
HpyCH4III	ACNGT	4 cut(s)	241, 320, 745, 811
HpyCH4IV	ACGT	4 cut(s)	191, 587, 1080, 1219
HpyCH4V	TGCA	3 cut(s)	298, 439, 453
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 445, 536, 551, 824
HpySE526I	ACGT	4 cut(s)	191, 587, 1080, 1219
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	4 cut(s)	89, 172, 278, 468
HspAI	GCGC	1 cut(s)	651
Ksp22I	TGATCA	1 cut(s)	981
Kzo9I	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 362, 981, 990
LmnI	GCTCC	2 cut(s)	41, 425
Lsp1109I	GCAGC	5 cut(s)	115, 526, 529, 640, 782
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	2 cut(s)	1151, 1188
MaeII	ACGT	4 cut(s)	191, 587, 1080, 1219
MaeIII	GTNAC	3 cut(s)	281, 659, 778
MalI	GATC	9 cut(s)	14, 30, 70, 118, 213, 357, 364, 983, 992
MboI	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 362, 981, 990
MboII	GAAGA	4 cut(s)	22, 256, 259, 817
MflI	RGATCY	2 cut(s)	68, 990
MhlI	GDGCHC	2 cut(s)	849, 1215
MluCI	AATT	6 cut(s)	73, 267, 409, 873, 906, 1009
MlyI	GAGTC	2 cut(s)	144, 298
MmeI	TCCRAC	1 cut(s)	339
MroXI	GAANNNNTTC	2 cut(s)	701, 1065
MseI	TTAA	4 cut(s)	693, 714, 885, 1085
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	1 cut(s)	1005
MwoI	GCNNNNNNNGC	5 cut(s)	33, 445, 536, 551, 824
NdeII	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 362, 981, 990
NlaIII	CATG	4 cut(s)	89, 172, 278, 468
NlaIV	GGNNCC	4 cut(s)	531, 846, 1024, 1160
NmuCI	GTSAC	2 cut(s)	281, 659
NspI	RCATGY	2 cut(s)	172, 468
PceI	AGGCCT	2 cut(s)	23, 1131
PdmI	GAANNNNTTC	2 cut(s)	701, 1065
PfeI	GAWTC	4 cut(s)	472, 731, 917, 1061
PkrI	GCNGC	5 cut(s)	105, 541, 544, 655, 772
PleI	GAGTC	2 cut(s)	144, 297
PmaCI	CACGTG	1 cut(s)	1220
PmlI	CACGTG	1 cut(s)	1220
PpsI	GAGTC	2 cut(s)	144, 297
Ppu21I	YACGTR	1 cut(s)	1220
PshAI	GACNNNNGTC	1 cut(s)	288
PspCI	CACGTG	1 cut(s)	1220
PspN4I	GGNNCC	4 cut(s)	531, 846, 1024, 1160
PspPI	GGNCC	4 cut(s)	89, 1022, 1105, 1158
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	2 cut(s)	68, 990
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	4 cut(s)	485, 614, 747, 1029
RsaNI	GTAC	4 cut(s)	484, 613, 746, 1028
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	693, 714, 885, 1085
SatI	GCNGC	5 cut(s)	104, 540, 543, 654, 771
Sau3AI	GATC	9 cut(s)	12, 28, 68, 116, 211, 355, 362, 981, 990
Sau96I	GGNCC	4 cut(s)	89, 1022, 1105, 1158
SchI	GAGTC	2 cut(s)	144, 298
SduI	GDGCHC	2 cut(s)	849, 1215
SfaNI	GCATC	1 cut(s)	395
SfcI	CTRYAG	2 cut(s)	513, 774
SinI	GGWCC	2 cut(s)	89, 1158
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	6 cut(s)	73, 267, 409, 873, 906, 1009
SseBI	AGGCCT	2 cut(s)	23, 1131
SsiI	CCGC	1 cut(s)	818
SspMI	CTAG	2 cut(s)	1151, 1188
StuI	AGGCCT	2 cut(s)	23, 1131
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	4 cut(s)	241, 320, 745, 811
TaiI	ACGT	4 cut(s)	194, 590, 1083, 1222
TaqI	TCGA	3 cut(s)	115, 361, 705
TasI	AATT	6 cut(s)	73, 267, 409, 873, 906, 1009
TatI	WGTACW	1 cut(s)	612
TfiI	GAWTC	4 cut(s)	472, 731, 917, 1061
Tru1I	TTAA	4 cut(s)	693, 714, 885, 1085
Tru9I	TTAA	4 cut(s)	693, 714, 885, 1085
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	2 cut(s)	281, 659
TseI	GCWGC	5 cut(s)	103, 539, 542, 653, 770
Tsp45I	GTSAC	2 cut(s)	281, 659
TspDTI	ATGAA	3 cut(s)	17, 415, 936
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	89, 1158
XceI	RCATGY	2 cut(s)	172, 468
XmnI	GAANNNNTTC	2 cut(s)	701, 1065
XspI	CTAG	2 cut(s)	1151, 1188
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.