Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006597

Physical Location & Seq

Genomic Coordinates Forward (+)

15527196 .. 15531527

Gene Structure 4332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATTCCTGGATACCGCTTCGACTCGCCAAATGGTCTTCTACCTCTGGTACGACGACATCTGACGGCGAACTCATTCTCCAGCTACGGAACCAGCTCCAATGTGGCCGGGTCAAACTTTACCCGGTACATCAAATCCGGTGAAGCAGACGATTCCTATGTGGACAGCTACGTCAGCACCATTGGAGTTGATTTTAAAATTAGGACTGTGGAGCTAGATGGGAAGACATTCTCTATGTTCCGTGAACTCCGTGACATTAATCACAAGCATTTGATCTCATTCAAAGGTTTCTCTATTAGTCCTATGTTATTGCTTGTGTTCATATCTGTACAGAGGTCTCAAGAACGGGAGAACTTTGTGAAGAAGATTGCTTGCAACAATCTCATGTGGAAGTGGAGTTCTGCTTCTAGTTCAGATCATCGACGTCAGATCAGTGAGGAATTTGAACATCGTATTGGAATGATGGAAACTTCATTAAGCAAGTTCGGAATGATCTTGGATTCTGTCCAGAGTGATGTTATGCAAATAAAGAAAGGAACAAAAGAATTTTCAATGGAGAGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.49

Weight (kDa)

8.65

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01690 AT1G01690 AT1G01690
fragaria_vesca	FvH4_7g14300 FvH4_7g14300
malus_domestica	MD01G1061000.v1.1 MD07G1136800.v1.1
prunus_persica	Prupe.2G170800_v2.0.a1
pyrus_communis	pycom01g09110 pycom07g13450
rosa_chinensis	RchiOBHm_Chr1g0355291
rosa_laevigata	RLG00000001169 RLG00000007299 RLG00000013822 RLG00000017929 RLG00000028163
rosa_multiflora	Rmu_sc0004135.1_g000021
rosa_roxburghii	Rroxscaffold_4G00300520
rosa_rugosa	Rorug01G0246500 Rorug04G0015600
rosa_samantha	Rh1AG258700 Rh1BG228300 Rh1CG242300 Rh1DG256100 Rh5CG336500
rosa_wichuraiana	Rw1G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	427
AciI	CCGC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	440, 545
AcyI	GRCGYC	1 cut(s)	424
AfaI	GTAC	3 cut(s)	51, 128, 330
AgsI	TTSAA	3 cut(s)	283, 446, 552
AjnI	CCWGG	1 cut(s)	7
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AloI	GAACNNNNNNTCC	4 cut(s)	62, 94, 382, 414
AluBI	AGCT	4 cut(s)	84, 96, 168, 214
AluI	AGCT	4 cut(s)	84, 96, 168, 214
Alw26I	GTCTC	1 cut(s)	342
AoxI	GGCC	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	440, 545
AseI	ATTAAT	1 cut(s)	258
Asp700I	GAANNNNTTC	2 cut(s)	74, 227
AsuC2I	CCSGG	2 cut(s)	109, 124
AsuHPI	GGTGA	1 cut(s)	152
BbsI	GAAGAC	2 cut(s)	29, 230
BccI	CCATC	2 cut(s)	212, 457
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	9
BciVI	GTATCC	1 cut(s)	5
BcnI	CCSGG	2 cut(s)	109, 124
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	2 cut(s)	215, 408
BfuI	GTATCC	1 cut(s)	5
Bme1390I	CCNGG	3 cut(s)	9, 109, 124
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	3 cut(s)	9, 109, 124
BpiI	GAAGAC	2 cut(s)	29, 230
BpmI	CTGGAG	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	324
BpuMI	CCSGG	2 cut(s)	109, 124
BsaHI	GRCGYC	1 cut(s)	424
BsaI	GGTCTC	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	3 cut(s)	62, 92, 548
BseBI	CCWGG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	108, 124, 138
BsmAI	GTCTC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	342
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	4 cut(s)	273, 415, 429, 492
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	328
BssMI	GATC	4 cut(s)	273, 415, 429, 492
BssNI	GRCGYC	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	208
BstACI	GRCGYC	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	373
BstKTI	GATC	4 cut(s)	276, 418, 432, 495
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	4 cut(s)	273, 415, 429, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	3 cut(s)	7, 107, 122
BstV2I	GAAGAC	2 cut(s)	29, 230
BsuI	GTATCC	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	373
Csp6I	GTAC	3 cut(s)	50, 127, 329
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	5 cut(s)	84, 96, 107, 168, 214
CviKI_1	RGCY	5 cut(s)	84, 96, 107, 168, 214
CviQI	GTAC	3 cut(s)	50, 127, 329
DpnI	GATC	4 cut(s)	275, 417, 431, 494
DpnII	GATC	4 cut(s)	273, 415, 429, 492
DraI	TTTAAA	1 cut(s)	196
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	7
FaeI	CATG	1 cut(s)	388
FaiI	YATR	6 cut(s)	159, 236, 305, 323, 386, 521
FatI	CATG	1 cut(s)	384
FspBI	CTAG	2 cut(s)	215, 408
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	3 cut(s)	108, 124, 138
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	1 cut(s)	388
HinfI	GANTC	4 cut(s)	4, 23, 152, 500
HpaII	CCGG	3 cut(s)	108, 124, 138
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	163, 245
Hpy188I	TCNGA	4 cut(s)	63, 415, 429, 488
Hpy188III	TCNNGA	2 cut(s)	341, 508
Hpy8I	GTNNAC	2 cut(s)	163, 245
Hpy99I	CGWCG	2 cut(s)	57, 426
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	171, 424
HpyCH4V	TGCA	2 cut(s)	375, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	171, 424
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	273, 415, 429, 492
LmnI	GCTCC	2 cut(s)	101, 211
LpnPI	CCDG	8 cut(s)	21, 32, 94, 106, 121, 137, 151, 521
MaeI	CTAG	2 cut(s)	215, 408
MaeII	ACGT	2 cut(s)	171, 424
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	4 cut(s)	275, 417, 431, 494
MboI	GATC	4 cut(s)	273, 415, 429, 492
MboII	GAAGA	4 cut(s)	29, 235, 373, 376
MluCI	AATT	3 cut(s)	198, 440, 545
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	3 cut(s)	54, 327, 430
MroXI	GAANNNNTTC	2 cut(s)	74, 227
MseI	TTAA	3 cut(s)	195, 258, 476
MspI	CCGG	3 cut(s)	108, 124, 138
MspR9I	CCNGG	3 cut(s)	9, 109, 124
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	174
NciI	CCSGG	2 cut(s)	109, 124
NdeII	GATC	4 cut(s)	273, 415, 429, 492
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	251
PdmI	GAANNNNTTC	2 cut(s)	74, 227
PfeI	GAWTC	3 cut(s)	4, 152, 500
PfoI	TCCNGGA	1 cut(s)	7
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PshBI	ATTAAT	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	91
RsaI	GTAC	3 cut(s)	51, 128, 330
RsaNI	GTAC	3 cut(s)	50, 127, 329
SaqAI	TTAA	3 cut(s)	195, 258, 476
Sau3AI	GATC	4 cut(s)	273, 415, 429, 492
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	3 cut(s)	9, 109, 124
SetI	ASST	9 cut(s)	46, 86, 98, 170, 174, 216, 289, 338, 427
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	3 cut(s)	198, 440, 545
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	2 cut(s)	215, 408
StyD4I	CCNGG	3 cut(s)	7, 107, 122
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	2 cut(s)	174, 427
TaqI	TCGA	2 cut(s)	21, 421
TasI	AATT	3 cut(s)	198, 440, 545
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	3 cut(s)	4, 152, 500
Tru1I	TTAA	3 cut(s)	195, 258, 476
Tru9I	TTAA	3 cut(s)	195, 258, 476
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	310, 462
TspGWI	ACGGA	3 cut(s)	102, 230, 239
TspRI	CASTG	1 cut(s)	439
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	2 cut(s)	440, 545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmnI	GAANNNNTTC	2 cut(s)	74, 227
XspI	CTAG	2 cut(s)	215, 408
ZraI	GACGTC	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.