AT1G03020

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004905
Physical Location & Seq
Reverse (-)
697919 .. 698591
673 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03020.1

Sequence Viewer

Length: 309 bp
ATGGAGAAGATATCAAATTTGTTAGAAGACAAGCCCGTGGTGATATTCAGCAAGACGTCCTGCTGTATGAGTCACTCGATCAAGTCGCTTATATCTGGTTACGGTGCGAATTCAACAGTGTATGAGCTAGACGAAATGTCTAATGGACCAGAGATCGAACGAGCACTTGTAGAGCTTGGGTGCAAACCGACTGTGCCAGCTGTCTTTATAGGGCAAGAGCTCGTAGGTGGTGCAAATCAACTTATGTCTCTTCAAGTCAGGAACCAACTAGCTTCGTTGCTCCGAAGAGCTGGAGCCATATGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

102

Amino Acids

11.07

Weight (kDa)

5.75

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 4.5e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 59
AcsI RAATTY 2 cut(s) 16, 109
AcyI GRCGYC 1 cut(s) 56
AgsI TTSAA 2 cut(s) 114, 254
AhdI GACNNNNNGTC 1 cut(s) 136
AluBI AGCT 6 cut(s) 127, 175, 200, 220, 272, 290
AluI AGCT 6 cut(s) 127, 175, 200, 220, 272, 290
Alw21I GWGCWC 2 cut(s) 166, 222
Alw26I GTCTC 1 cut(s) 252
ApoI RAATTY 2 cut(s) 16, 109
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 166, 222
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 2 cut(s) 128, 269
Bme18I GGWCC 1 cut(s) 146
BmeRI GACNNNNNGTC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 263, 295
BpiI GAAGAC 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 36
BsiHKAI GWGCWC 2 cut(s) 166, 222
BsmAI GTCTC 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 166, 222
Bsp143I GATC 2 cut(s) 78, 153
BspLI GGNNCC 2 cut(s) 263, 295
BspQI GCTCTTC 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 78, 153
BssNI GRCGYC 1 cut(s) 56
Bst4CI ACNGT 3 cut(s) 104, 118, 193
Bst6I CTCTTC 2 cut(s) 255, 280
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 36
BstKTI GATC 2 cut(s) 81, 156
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 2 cut(s) 78, 153
BstV2I GAAGAC 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 146
CviJI RGCY 8 cut(s) 34, 127, 175, 200, 220, 272, 290, 296
CviKI_1 RGCY 8 cut(s) 34, 127, 175, 200, 220, 272, 290, 296
DpnI GATC 2 cut(s) 80, 155
DpnII GATC 2 cut(s) 78, 153
DriI GACNNNNNGTC 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 255, 280
Eam1105I GACNNNNNGTC 1 cut(s) 136
EarI CTCTTC 2 cut(s) 255, 280
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco32I GATATC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 109
EcoRV GATATC 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 222
FaiI YATR 7 cut(s) 68, 92, 123, 209, 245, 299, 301
FauNDI CATATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 2 cut(s) 128, 269
Hin1I GRCGYC 1 cut(s) 56
HinfI GANTC 1 cut(s) 70
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 284
Hpy188III TCNNGA 1 cut(s) 259
HpyCH4III ACNGT 3 cut(s) 104, 118, 193
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 183, 233
HpySE526I ACGT 1 cut(s) 56
Hsp92I GRCGYC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 78, 153
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 2 cut(s) 285, 293
LpnPI CCDG 6 cut(s) 73, 81, 162, 210, 244, 276
MaeI CTAG 2 cut(s) 128, 269
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 2 cut(s) 71, 98
MalI GATC 2 cut(s) 80, 155
MboI GATC 2 cut(s) 78, 153
MboII GAAGA 4 cut(s) 19, 38, 242, 297
MhlI GDGCHC 2 cut(s) 166, 222
MluCI AATT 2 cut(s) 16, 109
MlyI GAGTC 1 cut(s) 79
MseI TTAA 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 200
NdeI CATATG 1 cut(s) 299
NdeII GATC 2 cut(s) 78, 153
NlaIV GGNNCC 2 cut(s) 263, 295
NmuCI GTSAC 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 280
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 263, 295
PspPI GGNCC 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 200
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 307
Sau3AI GATC 2 cut(s) 78, 153
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 79
SduI GDGCHC 2 cut(s) 166, 222
SetI ASST 8 cut(s) 59, 129, 177, 202, 222, 229, 274, 292
SinI GGWCC 1 cut(s) 146
Sse9I AATT 2 cut(s) 16, 109
SspMI CTAG 2 cut(s) 128, 269
SstI GAGCTC 1 cut(s) 222
TaaI ACNGT 3 cut(s) 104, 118, 193
TaiI ACGT 1 cut(s) 59
TaqI TCGA 2 cut(s) 77, 156
TasI AATT 2 cut(s) 16, 109
Tru1I TTAA 1 cut(s) 307
Tru9I TTAA 1 cut(s) 307
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 2 cut(s) 16, 109
XspI CTAG 2 cut(s) 128, 269
ZraI GACGTC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.