Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001788.1

Orthogroup ID

OG0004905

Physical Location & Seq

Genomic Coordinates Reverse (-)

70163 .. 70462

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001788.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggtgaccggaaagccagtggtgatattcagcaagagcacatgttgcatgagccactccatcagctcactgataacagggtacggggcgaatccaacagtgtatgagcttgatcaaatcccaaatgggcaagtaatagagagggtgctagttgagcagctgaaatgcgagccaagtgtgccagctgttttcataggccaacagttcgttggtggagctaatcaggtcatgaccctccaactcagaaaccagcttgcccctaggctcctagaggccaatgccatttgggtttggaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

99

Amino Acids

10.85

Weight (kDa)

6.53

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03020 AT3G62930
fragaria_vesca	FvH4_2g24960
malus_domestica	MD11G1300400.v1.1 MD11G1300500.v1.1
prunus_persica	Prupe.8G254600_v2.0.a1
pyrus_communis	pycom11g26380
rosa_chinensis	RchiOBHm_Chr6g0292901 RchiOBHm_Chr6g0292911 RchiOBHm_Chr6g0292921
rosa_laevigata	RLG00000011980 RLG00000011981
rosa_multiflora	Rmu_sc0000639.1_g000002 Rmu_sc0000639.1_g000010 Rmu_sc0001788.1_g000011
rosa_roxburghii	Rroxscaffold_7G00174560 Rroxscaffold_7G00174600
rosa_rugosa	Rorug06G0230700 Rorug06G0230800 Rorug06G0230900 Rorug06G0230900
rosa_samantha	Rh6AG343900 Rh6BG351300 Rh6CG358200 Rh6CG358300 Rh6CG358400 Rh6DG344000 Rh6DG344100
rosa_wichuraiana	Rw6G030010 Rw6G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	41
AluBI	AGCT	6 cut(s)	66, 109, 160, 185, 218, 253
AluI	AGCT	6 cut(s)	66, 109, 160, 185, 218, 253
Alw21I	GWGCWC	1 cut(s)	41
AoxI	GGCC	2 cut(s)	196, 273
ApeKI	GCWGC	1 cut(s)	157
AspA2I	CCTAGG	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	16, 34
AvrII	CCTAGG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	112
BfaI	CTAG	3 cut(s)	149, 261, 269
BisI	GCNGC	1 cut(s)	158
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	2 cut(s)	198, 275
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	9
BsnI	GGCC	2 cut(s)	198, 275
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	198, 275
BspCNI	CTCAG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	100, 204
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstC8I	GCNNGC	3 cut(s)	170, 183, 255
BstDEI	CTNAG	1 cut(s)	242
BstEII	GGTNACC	1 cut(s)	4
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 154, 178
BstNSI	RCATGY	1 cut(s)	45
BstPI	GGTNACC	1 cut(s)	4
BstV1I	GCAGC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	198, 275
BtsIMutI	CAGTG	3 cut(s)	24, 68, 105
Cac8I	GCNNGC	3 cut(s)	170, 183, 255
CciI	TCATGA	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	3 cut(s)	42, 49, 229
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	3 cut(s)	45, 52, 232
FaiI	YATR	5 cut(s)	43, 50, 105, 194, 230
FatI	CATG	3 cut(s)	41, 48, 228
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	3 cut(s)	149, 261, 269
GluI	GCNGC	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	198, 275
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	3 cut(s)	45, 52, 232
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	2 cut(s)	16, 34
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	100, 204
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 154, 178
HpyF3I	CTNAG	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	45, 52, 232
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	2 cut(s)	215, 270
LpnPI	CCDG	6 cut(s)	22, 30, 63, 195, 209, 263
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	3 cut(s)	149, 261, 269
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	41
MmeI	TCCRAC	2 cut(s)	119, 262
MnlI	CCTC	3 cut(s)	135, 245, 265
MspA1I	CMGCKG	2 cut(s)	160, 185
MspI	CCGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	45, 154, 178
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	45, 52, 232
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	45
PagI	TCATGA	1 cut(s)	228
PciI	ACATGT	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	159
PscI	ACATGT	1 cut(s)	41
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	266
PvuII	CAGCTG	2 cut(s)	160, 185
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	7 cut(s)	68, 111, 162, 187, 220, 228, 255
SspMI	CTAG	3 cut(s)	149, 261, 269
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	100, 204
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	3 cut(s)	24, 75, 105
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	181
TspRI	CASTG	3 cut(s)	24, 75, 105
XceI	RCATGY	1 cut(s)	45
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XmaJI	CCTAGG	1 cut(s)	260
XspI	CTAG	3 cut(s)	149, 261, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.