Rroxscaffold_7G00174600

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004905
Physical Location & Seq
Reverse (-)
14250304 .. 14252928
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174600.1

Sequence Viewer

Length: 357 bp
ATGGGAGAGAGAAAAGTGGGTTGTGCTTTTGCAATGGATATGATAACAAGCATGGTGACCGGAAAGCCAGTGGTGATATTCAGCAAGAGCACATGTTGCATGAGCCACTCCATCAGCTCACTGATAACAGGGTACGGGGCGAATCCAACAGTGTATGAGCTTGATCAAATCCCAAATGGGCAAGTAATAGAGAGGGTACTAGTTGAGCAGCTGAAATGCGAGCCAAGTGTGCCAGCTGTTTTCATAGGCCAACAGTTCGTTGGTGGAGCTAATCAGGTCATGACCCTCCAACTCAGAAACCAGCTTGCGCCCAGGCTCCTAGCGGCCAATGCCATTTGGGTTTGGAACCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

118

Amino Acids

12.87

Weight (kDa)

7.66

Isoelectric Point (pI)

25.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 24 - 87 1.2e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 324
AfaI GTAC 2 cut(s) 134, 198
AflIII ACRYGT 1 cut(s) 92
AhlI ACTAGT 1 cut(s) 199
AjnI CCWGG 1 cut(s) 311
AluBI AGCT 6 cut(s) 117, 160, 211, 236, 269, 304
AluI AGCT 6 cut(s) 117, 160, 211, 236, 269, 304
Alw21I GWGCWC 1 cut(s) 92
AoxI GGCC 2 cut(s) 247, 324
ApeKI GCWGC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 67, 85
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 313
BclI TGATCA 1 cut(s) 163
BcuI ACTAGT 1 cut(s) 199
BfaI CTAG 2 cut(s) 200, 320
BisI GCNGC 2 cut(s) 209, 324
BlsI GCNGC 2 cut(s) 210, 325
Bme1390I CCNGG 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 317, 347
BmrFI CCNGG 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 311
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 2 cut(s) 249, 326
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 60
BsnI GGCC 2 cut(s) 249, 326
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 323
BspANI GGCC 2 cut(s) 249, 326
BspCNI CTCAG 1 cut(s) 306
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 317, 347
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 3 cut(s) 151, 255, 354
BstAPI GCANNNNNTGC 1 cut(s) 96
BstC8I GCNNGC 3 cut(s) 221, 234, 306
BstDEI CTNAG 1 cut(s) 293
BstEII GGTNACC 1 cut(s) 55
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 3 cut(s) 96, 229, 329
BstNI CCWGG 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 96
BstPI GGTNACC 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 249, 326
BtsIMutI CAGTG 3 cut(s) 75, 119, 156
Cac8I GCNNGC 3 cut(s) 221, 234, 306
CciI TCATGA 1 cut(s) 279
CfoI GCGC 1 cut(s) 310
Csp6I GTAC 2 cut(s) 133, 197
CviAII CATG 4 cut(s) 52, 93, 100, 280
CviQI GTAC 2 cut(s) 133, 197
DdeI CTNAG 1 cut(s) 293
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 324
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 311
FaeI CATG 4 cut(s) 55, 96, 103, 283
FaiI YATR 7 cut(s) 41, 53, 94, 101, 156, 245, 281
FatI CATG 4 cut(s) 51, 92, 99, 279
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 209, 324
Fsp4HI GCNGC 2 cut(s) 209, 324
FspBI CTAG 2 cut(s) 200, 320
GlaI GCGC 1 cut(s) 309
GluI GCNGC 2 cut(s) 209, 324
HaeIII GGCC 2 cut(s) 249, 326
HapII CCGG 1 cut(s) 60
HhaI GCGC 1 cut(s) 310
Hin1II CATG 4 cut(s) 55, 96, 103, 283
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 67, 85
Hpy188I TCNGA 1 cut(s) 296
Hpy188III TCNNGA 1 cut(s) 280
HpyCH4III ACNGT 3 cut(s) 151, 255, 354
HpyCH4V TGCA 2 cut(s) 32, 99
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 229, 329
HpyF3I CTNAG 1 cut(s) 293
Hsp92II CATG 4 cut(s) 55, 96, 103, 283
HspAI GCGC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 266, 321
LpnPI CCDG 8 cut(s) 73, 81, 114, 246, 260, 298, 314, 325
Lsp1109I GCAGC 1 cut(s) 220
MaeI CTAG 2 cut(s) 200, 320
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 170, 313
MnlI CCTC 2 cut(s) 186, 296
MspA1I CMGCKG 2 cut(s) 211, 236
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 313
MvaI CCWGG 1 cut(s) 313
MwoI GCNNNNNNNGC 3 cut(s) 96, 229, 329
NdeII GATC 1 cut(s) 163
NlaIII CATG 4 cut(s) 55, 96, 103, 283
NlaIV GGNNCC 2 cut(s) 317, 347
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 96
PagI TCATGA 1 cut(s) 279
PciI ACATGT 1 cut(s) 92
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 210, 325
PscI ACATGT 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 311
PspEI GGTNACC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 2 cut(s) 317, 347
PvuII CAGCTG 2 cut(s) 211, 236
RsaI GTAC 2 cut(s) 134, 198
RsaNI GTAC 2 cut(s) 133, 197
SatI GCNGC 2 cut(s) 209, 324
Sau3AI GATC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 1 cut(s) 92
SetI ASST 7 cut(s) 119, 162, 213, 238, 271, 279, 306
SpeI ACTAGT 1 cut(s) 199
SsiI CCGC 1 cut(s) 323
SspMI CTAG 2 cut(s) 200, 320
StyD4I CCNGG 1 cut(s) 311
TaaI ACNGT 3 cut(s) 151, 255, 354
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 3 cut(s) 75, 126, 156
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 232
TspRI CASTG 3 cut(s) 75, 126, 156
XceI RCATGY 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XspI CTAG 2 cut(s) 200, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.