Rorug06G0230800

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004905
Physical Location & Seq
Forward (+)
37185030 .. 37185966
937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0230800.1

Sequence Viewer

Length: 876 bp
ATGCATGGTAAGTGTTTATTATGCAAAGAGATCAAGTATAGGGTGGGTACTGGTGAACACATATTTGCATGGCACGATCCATGGGTGCCTTTGCCGGTCCACTTCAAGCCTTTTTCTTCTCCACCTATGGGTTTAGAGGATTTGAAAGTGTGTGATCTGATGGTGGAAAATGAACATGAGTGGAATGTCCCACTTCTGGAAGCACTTTTCACACCTATGGAGGTTGGCATAATTGCAAATGACAACTTTGTATGGCATTATGACAAGAGGGGAGCTATGGAGTTAGAAGCGGCTACCATGTGGCTCGGCTTGACGATGGGAGAACTGATCGTGCATCTAGCTCAAAAGATTATTTGGGGTGCTAACAACCCTCCTAATGTACATGTCTTTATTTGGAGGCTCTTGAAGGGCATGCCCCCAACACGACATGCACTTTCTCACAAGGTTAGTCTCACCAATTTCGATTGTATATTTTGTAATCAATCCATTGAAGATGACTTGCATCTATTCAGAGATTGTGATGTCACCACATGCTTTTGGGTCTTTACTAAACTGGGCTTAATGGCTAAGAATGTGGCTGCATCATATGTGGAGGATTGGGTTTTGAACGTAATTAACAAACTAGATGGCATTCAACGTTGTGCTTTTTTTTTTATGGCACTGTGGGTTATATGGTCTGAACGTAACAATGTCATTTGGAATGGTAGTTTCTTTTGTCCATCAAATGCAGCTCAATGGGCTACTAAGTTCCTTGAGGAATACCAGCATCTACATGTCCCTGGAAGTGCGAAAATTAGGAGGGAGGAGACCAAATGGCATAACTCTCCCAGTGGGCATCTTAAAGTGAACGTTGATGGCAATTACAGAGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

291

Amino Acids

33.62

Weight (kDa)

6.3

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 111 - 180 2.2e-11 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AciI CCGC 1 cut(s) 290
AclI AACGTT 2 cut(s) 637, 849
AclWI GGATC 1 cut(s) 71
AfaI GTAC 2 cut(s) 49, 381
AfiI CCNNNNNNNGG 2 cut(s) 128, 196
AflIII ACRYGT 2 cut(s) 382, 772
AgsI TTSAA 6 cut(s) 106, 145, 406, 491, 607, 635
AjnI CCWGG 1 cut(s) 778
AluBI AGCT 4 cut(s) 275, 341, 731, 869
AluI AGCT 4 cut(s) 275, 341, 731, 869
Alw26I GTCTC 2 cut(s) 455, 800
AlwI GGATC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 578, 728
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 3 cut(s) 65, 445, 517
AvaII GGWCC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 565, 740
BccI CCATC 5 cut(s) 154, 310, 620, 727, 848
BciT130I CCWGG 1 cut(s) 780
BcoDI GTCTC 2 cut(s) 455, 800
BfaI CTAG 2 cut(s) 338, 623
BisI GCNGC 3 cut(s) 291, 579, 729
BlsI GCNGC 3 cut(s) 292, 580, 730
Bme1390I CCNGG 1 cut(s) 780
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 780
BmrI ACTGGG 2 cut(s) 563, 822
BmsI GCATC 5 cut(s) 343, 511, 590, 775, 844
BmuI ACTGGG 2 cut(s) 563, 822
BpuEI CTTGAG 1 cut(s) 773
BsaI GGTCTC 1 cut(s) 800
BsaJI CCNNGG 2 cut(s) 80, 778
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 196
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 55, 558, 828
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 2 cut(s) 80, 778
BseLI CCNNNNNNNGG 2 cut(s) 128, 196
BseNI ACTGG 3 cut(s) 55, 558, 828
BseRI GAGGAG 1 cut(s) 818
BseXI GCAGC 2 cut(s) 565, 740
BshNI GGYRCC 1 cut(s) 85
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 173, 761
BslI CCNNNNNNNGG 2 cut(s) 128, 196
BsmAI GTCTC 2 cut(s) 455, 800
BsmFI GGGAC 2 cut(s) 173, 761
BsmI GAATGC 1 cut(s) 630
Bso31I GGTCTC 1 cut(s) 800
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 4 cut(s) 30, 76, 154, 327
Bsp19I CCATGG 1 cut(s) 80
BspACI CCGC 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 800
BsrFI RCCGGY 1 cut(s) 94
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 3 cut(s) 55, 558, 828
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 80, 778
BssMI GATC 4 cut(s) 30, 76, 154, 327
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 1 cut(s) 663
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 413
BstDEI CTNAG 2 cut(s) 567, 744
BstDSI CCRYGG 1 cut(s) 80
BstKTI GATC 4 cut(s) 33, 79, 157, 330
BstMAI GTCTC 2 cut(s) 455, 800
BstMBI GATC 4 cut(s) 30, 76, 154, 327
BstMWI GCNNNNNNNGC 1 cut(s) 737
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 5 cut(s) 386, 415, 431, 534, 776
BstSCI CCNGG 1 cut(s) 778
BstV1I GCAGC 2 cut(s) 565, 740
BtgI CCRYGG 1 cut(s) 80
BtsIMutI CAGTG 2 cut(s) 659, 835
Cac8I GCNNGC 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 48, 380
CviQI GTAC 2 cut(s) 48, 380
DdeI CTNAG 2 cut(s) 567, 744
DpnI GATC 4 cut(s) 32, 78, 156, 329
DpnII GATC 4 cut(s) 30, 76, 154, 327
Eco130I CCWWGG 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 800
Eco47I GGWCC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 778
EcoT14I CCWWGG 1 cut(s) 80
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 80
FaqI GGGAC 2 cut(s) 173, 761
FauNDI CATATG 1 cut(s) 586
Fnu4HI GCNGC 3 cut(s) 291, 579, 729
Fsp4HI GCNGC 3 cut(s) 291, 579, 729
FspBI CTAG 2 cut(s) 338, 623
GluI GCNGC 3 cut(s) 291, 579, 729
HapII CCGG 1 cut(s) 95
HpaII CCGG 1 cut(s) 95
HphI GGTGA 3 cut(s) 65, 445, 517
Hpy166II GTNNAC 3 cut(s) 56, 100, 847
Hpy188I TCNGA 3 cut(s) 159, 512, 679
Hpy188III TCNNGA 2 cut(s) 197, 403
Hpy8I GTNNAC 3 cut(s) 56, 100, 847
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 1 cut(s) 663
HpyCH4IV ACGT 4 cut(s) 609, 637, 682, 849
HpyCH4V TGCA 9 cut(s) 4, 24, 68, 236, 334, 431, 502, 581, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 737
HpyF3I CTNAG 2 cut(s) 567, 744
HpySE526I ACGT 4 cut(s) 609, 637, 682, 849
Kzo9I GATC 4 cut(s) 30, 76, 154, 327
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 8 cut(s) 36, 108, 182, 539, 765, 776, 792, 841
Lsp1109I GCAGC 2 cut(s) 565, 740
LweI GCATC 5 cut(s) 343, 511, 590, 775, 844
MaeI CTAG 2 cut(s) 338, 623
MaeII ACGT 4 cut(s) 609, 637, 682, 849
MaeIII GTNAC 2 cut(s) 523, 683
MalI GATC 4 cut(s) 32, 78, 156, 329
MboI GATC 4 cut(s) 30, 76, 154, 327
MboII GAAGA 2 cut(s) 108, 503
MluCI AATT 6 cut(s) 231, 457, 612, 792, 859, 871
MnlI CCTC 9 cut(s) 130, 214, 261, 381, 390, 586, 748, 792, 796
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 560, 615, 840
MslI CAYNNNNRTG 2 cut(s) 215, 771
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 780
Mva1269I GAATGC 1 cut(s) 630
MvaI CCWGG 1 cut(s) 780
MwoI GCNNNNNNNGC 1 cut(s) 737
NcoI CCATGG 1 cut(s) 80
NdeI CATATG 1 cut(s) 586
NdeII GATC 4 cut(s) 30, 76, 154, 327
NlaIV GGNNCC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 523
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 5 cut(s) 386, 415, 431, 534, 776
PaeI GCATGC 1 cut(s) 415
PciI ACATGT 2 cut(s) 382, 772
PctI GAATGC 1 cut(s) 630
PkrI GCNGC 3 cut(s) 292, 580, 730
PscI ACATGT 2 cut(s) 382, 772
Psp1406I AACGTT 2 cut(s) 637, 849
Psp6I CCWGG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 97
RsaI GTAC 2 cut(s) 49, 381
RsaNI GTAC 2 cut(s) 48, 380
RseI CAYNNNNRTG 2 cut(s) 215, 771
SaqAI TTAA 3 cut(s) 560, 615, 840
SatI GCNGC 3 cut(s) 291, 579, 729
Sau3AI GATC 4 cut(s) 30, 76, 154, 327
Sau96I GGNCC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 780
SfaNI GCATC 5 cut(s) 343, 511, 590, 775, 844
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 215, 771
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
SphI GCATGC 1 cut(s) 415
Sse9I AATT 6 cut(s) 231, 457, 612, 792, 859, 871
SsiI CCGC 1 cut(s) 290
SspMI CTAG 2 cut(s) 338, 623
StyD4I CCNGG 1 cut(s) 778
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 663
TaiI ACGT 4 cut(s) 612, 640, 685, 852
TaqI TCGA 1 cut(s) 462
TasI AATT 6 cut(s) 231, 457, 612, 792, 859, 871
TatI WGTACW 1 cut(s) 379
TauI GCSGC 1 cut(s) 293
Tru1I TTAA 3 cut(s) 560, 615, 840
Tru9I TTAA 3 cut(s) 560, 615, 840
TscAI CASTG 2 cut(s) 666, 835
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 2 cut(s) 578, 728
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 2 cut(s) 666, 835
VpaK11BI GGWCC 1 cut(s) 97
XceI RCATGY 5 cut(s) 386, 415, 431, 534, 776
XspI CTAG 2 cut(s) 338, 623
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.