MD11G1300500.v1.1

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004905
Physical Location & Seq
Forward (+)
41687124 .. 41687447
324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1300500.v1.1.491

Sequence Viewer

Length: 324 bp
ATGGACACGATAACAAGCATGGTGGCCGAAAAGCCAGTGGTGATCTTCAGCAAGAGCTCTTGTTGCATGAGCCACACCATCAAGTCACTCATATCGAGCTACGGGGCAAACCCAACAGTGTATGAGCTAGATGAAATGCCAAATGGGCAGGCTATTGAAAGTGCTCTAGTTCAACAACTCAAGTGCCAACCAAGCGTGCCGGCTGTTTTCATAGGGAAACAGTTCGTCGGCGGAGCTGATCAGGTCATGAGCCTCCAAGTCAGAAACCAGCTTGCCCCAATGCTCATAAGGTCCAATGCTATTTGGGTTTGGAACAGAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

108

Amino Acids

11.73

Weight (kDa)

7.71

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 76 3.5e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 31
AgsI TTSAA 2 cut(s) 158, 173
AluBI AGCT 5 cut(s) 57, 99, 127, 236, 271
AluI AGCT 5 cut(s) 57, 99, 127, 236, 271
Alw21I GWGCWC 2 cut(s) 59, 166
AlwNI CAGNNNCTG 1 cut(s) 321
AoxI GGCC 1 cut(s) 24
Asp700I GAANNNNTTC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 59, 166
BccI CCATC 1 cut(s) 86
BclI TGATCA 1 cut(s) 238
BfaI CTAG 2 cut(s) 128, 167
BglI GCCNNNNNGGC 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 35
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 59, 166
BsiSI CCGG 1 cut(s) 200
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 59, 166
Bsp143I GATC 2 cut(s) 42, 238
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 26
BspHI TCATGA 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 199
BssMI GATC 2 cut(s) 42, 238
Bst4CI ACNGT 2 cut(s) 118, 222
BstC8I GCNNGC 4 cut(s) 150, 197, 201, 273
BstKTI GATC 2 cut(s) 45, 241
BstMBI GATC 2 cut(s) 42, 238
BstMWI GCNNNNNNNGC 3 cut(s) 63, 145, 192
BsuRI GGCC 1 cut(s) 26
BtsIMutI CAGTG 2 cut(s) 42, 123
Cac8I GCNNGC 4 cut(s) 150, 197, 201, 273
CaiI CAGNNNCTG 1 cut(s) 321
CciI TCATGA 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 291
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 3 cut(s) 19, 67, 247
DpnI GATC 2 cut(s) 44, 240
DpnII GATC 2 cut(s) 42, 238
EaeI YGGCCR 1 cut(s) 24
EciI GGCGGA 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 3 cut(s) 22, 70, 250
FaiI YATR 7 cut(s) 20, 68, 92, 123, 212, 248, 287
FatI CATG 3 cut(s) 18, 66, 246
FbaI TGATCA 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 59
FspBI CTAG 2 cut(s) 128, 167
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 200
Hin1II CATG 3 cut(s) 22, 70, 250
HpaII CCGG 1 cut(s) 200
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 118, 222
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 145, 192
Hsp92II CATG 3 cut(s) 22, 70, 250
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 2 cut(s) 42, 238
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 5 cut(s) 48, 134, 213, 227, 281
MaeI CTAG 2 cut(s) 128, 167
MaeIII GTNAC 1 cut(s) 84
MalI GATC 2 cut(s) 44, 240
MboI GATC 2 cut(s) 42, 238
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 59, 166
MnlI CCTC 1 cut(s) 263
MroNI GCCGGC 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 221
MspI CCGG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 63, 145, 192
NaeI GCCGGC 1 cut(s) 201
NdeII GATC 2 cut(s) 42, 238
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 3 cut(s) 22, 70, 250
NmuCI GTSAC 1 cut(s) 84
PagI TCATGA 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 42, 238
Sau96I GGNCC 1 cut(s) 291
SduI GDGCHC 2 cut(s) 59, 166
SetI ASST 8 cut(s) 59, 101, 129, 238, 246, 273, 293, 323
SinI GGWCC 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SsiI CCGC 1 cut(s) 231
SspMI CTAG 2 cut(s) 128, 167
SstI GAGCTC 1 cut(s) 59
TaaI ACNGT 2 cut(s) 118, 222
TaqI TCGA 1 cut(s) 95
TscAI CASTG 2 cut(s) 42, 123
TseFI GTSAC 1 cut(s) 84
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 147, 199
TspRI CASTG 2 cut(s) 42, 123
VpaK11BI GGWCC 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 2 cut(s) 128, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.