Rroxscaffold_7G00174560

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004905
Physical Location & Seq
Reverse (-)
14178134 .. 14183111
4978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174560.1

Sequence Viewer

Length: 363 bp
ATGGTCAAACAAGAATCTAAAGTGACAGAAATTGCTGAATTCTACAGAAATCCTGAAACAAACATGGTGACCGGAAAGCCAGTGGTGATATTCAGCAAGAGCACATGTTGCATGAGCCACTCCATCAGCTCACTGATAACAGGGTACGGGGCGAATCCAACAGTGTATGAGCTTGATCAAATCCCAAATGGGCAAGTAATAGAGAGGGTGCTAGTTGTGCAGCTGAAATGCGAGCCAAGTGTGCCAGCTGTTTTCATAGGCCAACAGTTCGTTGGTGGAGCTAATCAGGTCATGACCCTCCAACTCAGAAACCAGCTTGCGCCTAGGCTCCTAGCGGCCAATGCCATTTGGGTTTGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

120

Amino Acids

13.25

Weight (kDa)

7.71

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 28 - 91 4.2e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 1 cut(s) 38
AfaI GTAC 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 104
AluBI AGCT 6 cut(s) 129, 172, 223, 248, 281, 316
AluI AGCT 6 cut(s) 129, 172, 223, 248, 281, 316
Alw21I GWGCWC 1 cut(s) 104
AoxI GGCC 2 cut(s) 259, 336
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 38
AspA2I CCTAGG 1 cut(s) 323
AspLEI GCGC 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 79, 97
AvrII CCTAGG 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 131
BclI TGATCA 1 cut(s) 175
BfaI CTAG 3 cut(s) 212, 324, 332
BfmI CTRYAG 1 cut(s) 43
BisI GCNGC 2 cut(s) 221, 336
BlnI CCTAGG 1 cut(s) 323
BlsI GCNGC 2 cut(s) 222, 337
BmiI GGNNCC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 323
BsaWI WCCGGW 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 2 cut(s) 261, 338
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 72
BsnI GGCC 2 cut(s) 261, 338
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 335
BspANI GGCC 2 cut(s) 261, 338
BspCNI CTCAG 1 cut(s) 318
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 329
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 163, 267
BstAPI GCANNNNNTGC 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 233, 246, 318
BstDEI CTNAG 1 cut(s) 305
BstEII GGTNACC 1 cut(s) 67
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 4 cut(s) 108, 217, 241, 341
BstNSI RCATGY 1 cut(s) 108
BstPI GGTNACC 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 232
BsuRI GGCC 2 cut(s) 261, 338
BtsIMutI CAGTG 3 cut(s) 87, 131, 168
Cac8I GCNNGC 3 cut(s) 233, 246, 318
CciI TCATGA 1 cut(s) 291
CfoI GCGC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 145
CviAII CATG 4 cut(s) 64, 105, 112, 292
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 305
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 323
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 4 cut(s) 67, 108, 115, 295
FaiI YATR 6 cut(s) 65, 106, 113, 168, 257, 293
FatI CATG 4 cut(s) 63, 104, 111, 291
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 221, 336
Fsp4HI GCNGC 2 cut(s) 221, 336
FspBI CTAG 3 cut(s) 212, 324, 332
GlaI GCGC 1 cut(s) 321
GluI GCNGC 2 cut(s) 221, 336
HaeIII GGCC 2 cut(s) 261, 338
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 322
Hin1II CATG 4 cut(s) 67, 108, 115, 295
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HinfI GANTC 2 cut(s) 14, 154
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 79, 97
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 2 cut(s) 53, 292
HpyCH4III ACNGT 2 cut(s) 163, 267
HpyCH4V TGCA 2 cut(s) 111, 220
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 217, 241, 341
HpyF3I CTNAG 1 cut(s) 305
Hsp92II CATG 4 cut(s) 67, 108, 115, 295
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 278, 333
LpnPI CCDG 7 cut(s) 66, 85, 93, 126, 258, 272, 326
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 3 cut(s) 212, 324, 332
MaeIII GTNAC 2 cut(s) 22, 67
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 2 cut(s) 30, 38
MmeI TCCRAC 2 cut(s) 182, 325
MnlI CCTC 2 cut(s) 198, 308
MspA1I CMGCKG 2 cut(s) 223, 248
MspI CCGG 1 cut(s) 72
MwoI GCNNNNNNNGC 4 cut(s) 108, 217, 241, 341
NdeII GATC 1 cut(s) 175
NlaIII CATG 4 cut(s) 67, 108, 115, 295
NlaIV GGNNCC 1 cut(s) 329
NmuCI GTSAC 2 cut(s) 22, 67
NspI RCATGY 1 cut(s) 108
PagI TCATGA 1 cut(s) 291
PciI ACATGT 1 cut(s) 104
PfeI GAWTC 2 cut(s) 14, 154
PkrI GCNGC 2 cut(s) 222, 337
PscI ACATGT 1 cut(s) 104
PspEI GGTNACC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 329
PvuII CAGCTG 2 cut(s) 223, 248
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SatI GCNGC 2 cut(s) 221, 336
Sau3AI GATC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 104
SetI ASST 7 cut(s) 131, 174, 225, 250, 283, 291, 318
SfcI CTRYAG 1 cut(s) 43
Sse9I AATT 2 cut(s) 30, 38
SsiI CCGC 1 cut(s) 335
SspMI CTAG 3 cut(s) 212, 324, 332
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 163, 267
TasI AATT 2 cut(s) 30, 38
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 2 cut(s) 14, 154
TscAI CASTG 3 cut(s) 87, 138, 168
TseFI GTSAC 2 cut(s) 22, 67
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 2 cut(s) 22, 67
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 3 cut(s) 87, 138, 168
XapI RAATTY 1 cut(s) 38
XceI RCATGY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XmaJI CCTAGG 1 cut(s) 323
XspI CTAG 3 cut(s) 212, 324, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.