RLG00000011980

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004905
Physical Location & Seq
Reverse (-)
14311526 .. 14312180
655 bp
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UTR
Exon/CDS
Intron
RLM00000011980

Sequence Viewer

Length: 324 bp
ATGGATACGATAACAAGCATGGTGACCGGAAAGCCAGTGGTGATCTTCAGCAAGAGCACATGTTGCATGAGCCACTCCATCAGGTCACTGATAGCAGGGTACGGGGCGAATCCAACAGTGTATGAGCTTGATCAAATCCCAAATGGGCAAGTAATAGAGAGGGTACTAGTTGAGCAGCTGAAATGCGAACCAAGTGTGCCAGCTGTTTTTGTAGGCCAACAGTTCGTTGGTGGAGCTAATCAGGTCATGACCCTCCAACTCAGAAACCAGCTTGCGCCTAGGCTCCTAGCGGCCAATGCCATTTGGGTCTGGATCCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

108

Amino Acids

11.72

Weight (kDa)

7.73

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 76 5.4e-10 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 290
AclWI GGATC 2 cut(s) 307, 320
AcoI YGGCCR 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 2 cut(s) 101, 165
AflIII ACRYGT 1 cut(s) 59
AhlI ACTAGT 1 cut(s) 166
AluBI AGCT 5 cut(s) 127, 178, 203, 236, 271
AluI AGCT 5 cut(s) 127, 178, 203, 236, 271
Alw21I GWGCWC 1 cut(s) 59
AlwI GGATC 2 cut(s) 307, 320
AoxI GGCC 2 cut(s) 214, 291
ApeKI GCWGC 1 cut(s) 175
AspA2I CCTAGG 1 cut(s) 278
AspLEI GCGC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 34, 52
AvrII CCTAGG 1 cut(s) 278
BamHI GGATCC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 86
BclI TGATCA 1 cut(s) 130
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 3 cut(s) 167, 279, 287
BisI GCNGC 2 cut(s) 176, 291
BlnI CCTAGG 1 cut(s) 278
BlsI GCNGC 2 cut(s) 177, 292
BmiI GGNNCC 2 cut(s) 284, 314
BsaJI CCNNGG 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 2 cut(s) 216, 293
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 27
BsnI GGCC 2 cut(s) 216, 293
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 42, 130, 312
BspACI CCGC 1 cut(s) 290
BspANI GGCC 2 cut(s) 216, 293
BspCNI CTCAG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 284, 314
BspPI GGATC 2 cut(s) 307, 320
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 3 cut(s) 42, 130, 312
BssT1I CCWWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 118, 222, 321
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 201, 273
BstDEI CTNAG 1 cut(s) 260
BstEII GGTNACC 1 cut(s) 22
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 3 cut(s) 45, 133, 315
BstMBI GATC 3 cut(s) 42, 130, 312
BstMWI GCNNNNNNNGC 2 cut(s) 63, 296
BstNSI RCATGY 1 cut(s) 63
BstPI GGTNACC 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 2 cut(s) 216, 293
BtsIMutI CAGTG 3 cut(s) 42, 86, 123
Cac8I GCNNGC 2 cut(s) 201, 273
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 100, 164
CviAII CATG 4 cut(s) 19, 60, 67, 247
CviQI GTAC 2 cut(s) 100, 164
DdeI CTNAG 1 cut(s) 260
DpnI GATC 3 cut(s) 44, 132, 314
DpnII GATC 3 cut(s) 42, 130, 312
EaeI YGGCCR 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 31
Eco91I GGTNACC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 4 cut(s) 22, 63, 70, 250
FaiI YATR 5 cut(s) 20, 61, 68, 123, 248
FatI CATG 4 cut(s) 18, 59, 66, 246
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 176, 291
Fsp4HI GCNGC 2 cut(s) 176, 291
FspBI CTAG 3 cut(s) 167, 279, 287
GlaI GCGC 1 cut(s) 276
GluI GCNGC 2 cut(s) 176, 291
HaeIII GGCC 2 cut(s) 216, 293
HapII CCGG 1 cut(s) 27
HhaI GCGC 1 cut(s) 277
Hin1II CATG 4 cut(s) 22, 63, 70, 250
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 1 cut(s) 109
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 34, 52
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 2 cut(s) 247, 310
HpyCH4III ACNGT 3 cut(s) 118, 222, 321
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 296
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 4 cut(s) 22, 63, 70, 250
HspAI GCGC 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 42, 130, 312
LmnI GCTCC 2 cut(s) 233, 288
LpnPI CCDG 8 cut(s) 40, 48, 67, 81, 213, 227, 281, 295
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 3 cut(s) 167, 279, 287
MaeIII GTNAC 2 cut(s) 22, 84
MalI GATC 3 cut(s) 44, 132, 314
MboI GATC 3 cut(s) 42, 130, 312
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 137, 280
MnlI CCTC 2 cut(s) 153, 263
MspA1I CMGCKG 2 cut(s) 178, 203
MspI CCGG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 63, 296
NdeII GATC 3 cut(s) 42, 130, 312
NlaIII CATG 4 cut(s) 22, 63, 70, 250
NlaIV GGNNCC 2 cut(s) 284, 314
NmuCI GTSAC 2 cut(s) 22, 84
NspI RCATGY 1 cut(s) 63
PagI TCATGA 1 cut(s) 246
PciI ACATGT 1 cut(s) 59
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 177, 292
PscI ACATGT 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 284, 314
PsuI RGATCY 1 cut(s) 312
PvuII CAGCTG 2 cut(s) 178, 203
RsaI GTAC 2 cut(s) 101, 165
RsaNI GTAC 2 cut(s) 100, 164
SatI GCNGC 2 cut(s) 176, 291
Sau3AI GATC 3 cut(s) 42, 130, 312
SduI GDGCHC 1 cut(s) 59
SetI ASST 7 cut(s) 86, 129, 180, 205, 238, 246, 273
SpeI ACTAGT 1 cut(s) 166
SsiI CCGC 1 cut(s) 290
SspMI CTAG 3 cut(s) 167, 279, 287
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 3 cut(s) 118, 222, 321
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 3 cut(s) 42, 93, 123
TseFI GTSAC 2 cut(s) 22, 84
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 2 cut(s) 22, 84
TspRI CASTG 3 cut(s) 42, 93, 123
XceI RCATGY 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XmaJI CCTAGG 1 cut(s) 278
XspI CTAG 3 cut(s) 167, 279, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.