AT3G62930

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004905
Physical Location & Seq
Reverse (-)
23261442 .. 23261927
486 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62930.1

Sequence Viewer

Length: 309 bp
ATGGAAAGCGTTAGAAGTTTAGTTGAAGACAAACCAGTGGTGATATTCAGCAAAAGCTCTTGCTGCATGAGCCACTCAATTCAAACACTGATCTCAGGGTTTGGGGCAAAGATGACGGTCTACGAGCTAGACCAATTCTCAAACGGTCAGGAGATCGAGAAGGCATTGGTACAGATGGGGTGTAAACCCAGTGTACCAGCTGTGTTCATAGGGCAACAATTCATCGGTGGTGCTAACCAAGTAATGACTCTTCAGGTCAAGAACCAGCTAGCCGCAATGCTAAGAAGAGCCGGAGCCATATGGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

102

Amino Acids

11.11

Weight (kDa)

8.55

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 6.4e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 120
AciI CCGC 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 2 cut(s) 171, 195
AgsI TTSAA 2 cut(s) 26, 83
AluBI AGCT 4 cut(s) 57, 127, 200, 268
AluI AGCT 4 cut(s) 57, 127, 200, 268
ApeKI GCWGC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 52
AsuNHI GCTAGC 1 cut(s) 268
BarI GAAGNNNNNNTAC 2 cut(s) 234, 266
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 169
BfaI CTAG 2 cut(s) 128, 269
BisI GCNGC 2 cut(s) 64, 273
BlsI GCNGC 2 cut(s) 65, 274
BmiI GGNNCC 1 cut(s) 295
BmrI ACTGGG 1 cut(s) 183
BmtI GCTAGC 1 cut(s) 272
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 35, 189
Bse3DI GCAATG 1 cut(s) 282
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 35, 189
BseXI GCAGC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 291
Bsp143I GATC 2 cut(s) 90, 153
BspACI CCGC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 295
BspOI GCTAGC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 2 cut(s) 35, 189
BssMI GATC 2 cut(s) 90, 153
Bst4CI ACNGT 2 cut(s) 118, 146
Bst6I CTCTTC 2 cut(s) 255, 280
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 94, 281
BstKTI GATC 2 cut(s) 93, 156
BstMBI GATC 2 cut(s) 90, 153
BstMWI GCNNNNNNNGC 2 cut(s) 63, 69
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 33
BtsIMutI CAGTG 3 cut(s) 42, 86, 196
Cac8I GCNNGC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 170, 194
CviAII CATG 1 cut(s) 67
CviJI RGCY 8 cut(s) 57, 72, 127, 200, 268, 272, 290, 296
CviKI_1 RGCY 8 cut(s) 57, 72, 127, 200, 268, 272, 290, 296
CviQI GTAC 2 cut(s) 170, 194
DdeI CTNAG 2 cut(s) 94, 281
DpnI GATC 2 cut(s) 92, 155
DpnII GATC 2 cut(s) 90, 153
Eam1104I CTCTTC 2 cut(s) 255, 280
EarI CTCTTC 2 cut(s) 255, 280
Eco57I CTGAAG 1 cut(s) 236
FaeI CATG 1 cut(s) 70
FaiI YATR 4 cut(s) 68, 209, 299, 301
FatI CATG 1 cut(s) 66
FauNDI CATATG 1 cut(s) 299
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 64, 273
Fsp4HI GCNGC 2 cut(s) 64, 273
FspBI CTAG 2 cut(s) 128, 269
GluI GCNGC 2 cut(s) 64, 273
HapII CCGG 1 cut(s) 291
Hin1II CATG 1 cut(s) 70
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 3 cut(s) 121, 185, 194
Hpy188III TCNNGA 3 cut(s) 149, 157, 259
Hpy8I GTNNAC 3 cut(s) 121, 185, 194
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 2 cut(s) 118, 146
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 69
HpyF3I CTNAG 2 cut(s) 94, 281
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 2 cut(s) 90, 153
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 8 cut(s) 48, 81, 134, 202, 210, 239, 278, 304
Lsp1109I GCAGC 1 cut(s) 50
MaeI CTAG 2 cut(s) 128, 269
MalI GATC 2 cut(s) 92, 155
MboI GATC 2 cut(s) 90, 153
MboII GAAGA 3 cut(s) 38, 242, 297
MluCI AATT 3 cut(s) 78, 134, 218
MlyI GAGTC 1 cut(s) 241
MslI CAYNNNNRTG 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 63, 69
NdeI CATATG 1 cut(s) 299
NdeII GATC 2 cut(s) 90, 153
NheI GCTAGC 1 cut(s) 268
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 280
PkrI GCNGC 2 cut(s) 65, 274
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 171, 195
RsaNI GTAC 2 cut(s) 170, 194
RseI CAYNNNNRTG 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 280
SatI GCNGC 2 cut(s) 64, 273
Sau3AI GATC 2 cut(s) 90, 153
SchI GAGTC 1 cut(s) 241
SetI ASST 5 cut(s) 59, 129, 202, 258, 270
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 3 cut(s) 78, 134, 218
SsiI CCGC 1 cut(s) 273
SspMI CTAG 2 cut(s) 128, 269
TaaI ACNGT 2 cut(s) 118, 146
TaqI TCGA 1 cut(s) 156
TasI AATT 3 cut(s) 78, 134, 218
TauI GCSGC 1 cut(s) 275
TscAI CASTG 3 cut(s) 42, 93, 196
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 196, 211
TspRI CASTG 3 cut(s) 42, 93, 196
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 2 cut(s) 128, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.