pycom11g26380

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0004905
Physical Location & Seq
Forward (+)
28946962 .. 28947285
324 bp
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UTR
Exon/CDS
Intron
pycom11g26380.1

Sequence Viewer

Length: 324 bp
ATGGACACGATAACAAGCATTGTGGCTGAAAAGCCGGTGGTGATCGTCAGCAAGAGCTCTTGTTGCATGAGCCACACCATCAAGTCACTCATATCGAGCTATGGGGCAAACCCAACAGTGTACGAGCTAGATGAAATGCCAAATGGGCAGGCTATTGAAAGTGCACTAGTTCAGCAGCTCAAGTGCCAACCAAGTGTGCCGGCCATTTTCATAGGGCAACAGTTCGTAGGTGGAGCAGACCGGGTCATGAGCCTCCAAGTCAGAAACCAGCTTGTCCCAATGCTCATAAGGTCCAATGCTATTTGGGTTTGGACAACAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

108

Amino Acids

11.67

Weight (kDa)

6.53

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 76 4.1e-11 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 201
AfaI GTAC 1 cut(s) 122
AgsI TTSAA 1 cut(s) 158
AhlI ACTAGT 1 cut(s) 166
AluBI AGCT 5 cut(s) 57, 99, 127, 178, 271
AluI AGCT 5 cut(s) 57, 99, 127, 178, 271
Alw21I GWGCWC 2 cut(s) 59, 166
Alw44I GTGCAC 1 cut(s) 162
AoxI GGCC 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 291
BaeGI GKGCMC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 59, 166
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 86
BcnI CCSGG 1 cut(s) 242
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 2 cut(s) 128, 167
BglI GCCNNNNNGGC 1 cut(s) 145
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 242
Bse118I RCCGGY 2 cut(s) 34, 199
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 59, 166
BsiSI CCGG 3 cut(s) 35, 200, 241
BslFI GGGAC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 59, 166
Bsp143I GATC 1 cut(s) 42
BspANI GGCC 1 cut(s) 203
BspHI TCATGA 1 cut(s) 246
BsrFI RCCGGY 2 cut(s) 34, 199
BssAI RCCGGY 2 cut(s) 34, 199
BssMI GATC 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 118, 222
BstC8I GCNNGC 2 cut(s) 150, 201
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 63, 145
BstSCI CCNGG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 150, 201
CciI TCATGA 1 cut(s) 246
Cfr10I RCCGGY 2 cut(s) 34, 199
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 121
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 2 cut(s) 67, 247
CviQI GTAC 1 cut(s) 121
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 2 cut(s) 70, 250
FaiI YATR 6 cut(s) 68, 92, 102, 212, 248, 287
FaqI GGGAC 1 cut(s) 260
FatI CATG 2 cut(s) 66, 246
Fnu4HI GCNGC 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 2 cut(s) 128, 167
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 203
HapII CCGG 3 cut(s) 35, 200, 241
Hin1II CATG 2 cut(s) 70, 250
HpaII CCGG 3 cut(s) 35, 200, 241
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 121, 164
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 2 cut(s) 121, 164
HpyCH4III ACNGT 2 cut(s) 118, 222
HpyCH4V TGCA 2 cut(s) 66, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 145
Hsp92II CATG 2 cut(s) 70, 250
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 5 cut(s) 48, 134, 213, 254, 281
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 2 cut(s) 128, 167
MaeIII GTNAC 1 cut(s) 84
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MhlI GDGCHC 2 cut(s) 59, 166
MnlI CCTC 1 cut(s) 263
MroNI GCCGGC 1 cut(s) 199
MspI CCGG 3 cut(s) 35, 200, 241
MspR9I CCNGG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 63, 145
NaeI GCCGGC 1 cut(s) 201
NciI CCSGG 1 cut(s) 242
NdeII GATC 1 cut(s) 42
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 2 cut(s) 70, 250
NmuCI GTSAC 1 cut(s) 84
PagI TCATGA 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 201
PflFI GACNNNGTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 291
PsyI GACNNNGTC 1 cut(s) 242
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SacI GAGCTC 1 cut(s) 59
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 2 cut(s) 59, 166
SetI ASST 8 cut(s) 59, 101, 129, 180, 232, 273, 293, 323
SinI GGWCC 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SpeI ACTAGT 1 cut(s) 166
SspMI CTAG 2 cut(s) 128, 167
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 118, 222
TaqI TCGA 1 cut(s) 95
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 147, 199
TspRI CASTG 1 cut(s) 123
Tth111I GACNNNGTC 1 cut(s) 242
VneI GTGCAC 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 291
XspI CTAG 2 cut(s) 128, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.