Rh6DG344100

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004905
Physical Location & Seq
Forward (+)
54716405 .. 54731368
14964 bp
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UTR
Exon/CDS
Intron
Rh6DG344100.1

Sequence Viewer

Length: 318 bp
ATGGATACGATAACAAGCATGGTGACTGGAAAGCCAGTGGTAATCTTCAGCAGGAGCACATGTTGCATGAGCCACTCCATCAGCTCACTGATAACGGGGTACGGGGCGAATCCAACAGTGTATGAGCTTGATCAAATCCCAAATGGGCAAGTAATAGAGAGGGTGCTAGTTGAGCAGCTGAAATGCGAGCCAAGTGTGCCAGCTGTTTTCATAGGCCAACAGTTCGTTGGTGGAGCTAATCAGGTCATGACCCTCCAACTCAGAAACCAGCTTGCGCCTAGGCTCCTAGAGGCCAATGCCATTTGGGTTTGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

105

Amino Acids

11.52

Weight (kDa)

5.64

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 76 3.2e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 59
AluBI AGCT 6 cut(s) 84, 127, 178, 203, 236, 271
AluI AGCT 6 cut(s) 84, 127, 178, 203, 236, 271
Alw21I GWGCWC 1 cut(s) 59
AoxI GGCC 2 cut(s) 214, 291
ApeKI GCWGC 1 cut(s) 175
AspA2I CCTAGG 1 cut(s) 278
AspLEI GCGC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 34
AvrII CCTAGG 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 86
BclI TGATCA 1 cut(s) 130
BfaI CTAG 3 cut(s) 167, 279, 287
BisI GCNGC 1 cut(s) 176
BlnI CCTAGG 1 cut(s) 278
BlsI GCNGC 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bse1I ACTGG 2 cut(s) 31, 35
BseDI CCNNGG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 2 cut(s) 31, 35
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 2 cut(s) 216, 293
BsiHKAI GWGCWC 1 cut(s) 59
BsnI GGCC 2 cut(s) 216, 293
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 2 cut(s) 216, 293
BspCNI CTCAG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 284
BsrI ACTGG 2 cut(s) 31, 35
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 118, 222
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 188, 201, 273
BstDEI CTNAG 1 cut(s) 260
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 3 cut(s) 63, 172, 196
BstNSI RCATGY 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 216, 293
BtsIMutI CAGTG 3 cut(s) 42, 86, 123
Cac8I GCNNGC 3 cut(s) 188, 201, 273
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 100
CviAII CATG 4 cut(s) 19, 60, 67, 247
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 4 cut(s) 22, 63, 70, 250
FaiI YATR 6 cut(s) 20, 61, 68, 123, 212, 248
FatI CATG 4 cut(s) 18, 59, 66, 246
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 3 cut(s) 167, 279, 287
GlaI GCGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 2 cut(s) 216, 293
HhaI GCGC 1 cut(s) 277
Hin1II CATG 4 cut(s) 22, 63, 70, 250
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 1 cut(s) 109
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 1 cut(s) 247
HpyCH4III ACNGT 2 cut(s) 118, 222
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 172, 196
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 4 cut(s) 22, 63, 70, 250
HspAI GCGC 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 3 cut(s) 54, 233, 288
LpnPI CCDG 6 cut(s) 12, 37, 48, 213, 227, 281
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 3 cut(s) 167, 279, 287
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 137, 280
MnlI CCTC 3 cut(s) 153, 263, 283
MspA1I CMGCKG 2 cut(s) 178, 203
MwoI GCNNNNNNNGC 3 cut(s) 63, 172, 196
NdeII GATC 1 cut(s) 130
NlaIII CATG 4 cut(s) 22, 63, 70, 250
NlaIV GGNNCC 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 63
PagI TCATGA 1 cut(s) 246
PciI ACATGT 1 cut(s) 59
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 177
PscI ACATGT 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 284
PvuII CAGCTG 2 cut(s) 178, 203
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 59
SetI ASST 7 cut(s) 86, 129, 180, 205, 238, 246, 273
SspMI CTAG 3 cut(s) 167, 279, 287
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 2 cut(s) 118, 222
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 3 cut(s) 42, 93, 123
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 199
TspRI CASTG 3 cut(s) 42, 93, 123
XceI RCATGY 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XmaJI CCTAGG 1 cut(s) 278
XspI CTAG 3 cut(s) 167, 279, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.