FvH4_2g24960

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004905
Physical Location & Seq
Forward (+)
20289572 .. 20290313
742 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24960.t1

Sequence Viewer

Length: 324 bp
ATGGATATGATAACAAGCATGGTGGCCGGAAAGCCAGTGGTGATCTTCAGCAGGAGCACAAGTGATATGAGCCACTCCATCGTGTCGCTGATAACGGGGTACGGGGCGAATCCAACAGTGTATGAGCTTGATCAAATCCCAAATGGGCAAGCAATAGAGAGGGTACTGGTTGAGCAGCTGAATTGCGAGCCTTGTGTGCCGGCTGTTTTCATAGGCCAACAGTTCGTTGGTGGAACTAATCAGGTCATGACCCTGCAACTCAGAAACCAGCTTGCGCCTAAGCTCCTGGCGGCCAATGCCATTTGGCTTTGGAATCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

108

Amino Acids

11.72

Weight (kDa)

5.05

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 290
AcoI YGGCCR 2 cut(s) 24, 291
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 2 cut(s) 101, 165
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 4 cut(s) 127, 178, 271, 283
AluI AGCT 4 cut(s) 127, 178, 271, 283
Alw21I GWGCWC 1 cut(s) 59
AoxI GGCC 3 cut(s) 24, 214, 291
ApeKI GCWGC 1 cut(s) 175
AspLEI GCGC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 287
BclI TGATCA 1 cut(s) 130
BisI GCNGC 2 cut(s) 176, 291
BlsI GCNGC 2 cut(s) 177, 292
Bme1390I CCNGG 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 35, 171
BseBI CCWGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 2 cut(s) 35, 171
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 3 cut(s) 26, 216, 293
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 27, 200
BsnI GGCC 3 cut(s) 26, 216, 293
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 42, 130
BspACI CCGC 1 cut(s) 290
BspANI GGCC 3 cut(s) 26, 216, 293
BspCNI CTCAG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 2 cut(s) 35, 171
BssAI RCCGGY 1 cut(s) 199
BssMI GATC 2 cut(s) 42, 130
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 3 cut(s) 118, 222, 321
BstC8I GCNNGC 4 cut(s) 150, 188, 201, 273
BstDEI CTNAG 2 cut(s) 260, 279
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 2 cut(s) 45, 133
BstMBI GATC 2 cut(s) 42, 130
BstMWI GCNNNNNNNGC 2 cut(s) 196, 296
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 3 cut(s) 26, 216, 293
BtsIMutI CAGTG 2 cut(s) 42, 123
Cac8I GCNNGC 4 cut(s) 150, 188, 201, 273
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 199
Csp6I GTAC 2 cut(s) 100, 164
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 2 cut(s) 19, 247
CviQI GTAC 2 cut(s) 100, 164
DdeI CTNAG 2 cut(s) 260, 279
DpnI GATC 2 cut(s) 44, 132
DpnII GATC 2 cut(s) 42, 130
EaeI YGGCCR 2 cut(s) 24, 291
Eco57I CTGAAG 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 22, 250
FaiI YATR 6 cut(s) 8, 20, 68, 123, 212, 248
FatI CATG 2 cut(s) 18, 246
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 176, 291
Fsp4HI GCNGC 2 cut(s) 176, 291
GlaI GCGC 1 cut(s) 276
GluI GCNGC 2 cut(s) 176, 291
HaeIII GGCC 3 cut(s) 26, 216, 293
HapII CCGG 2 cut(s) 27, 200
HhaI GCGC 1 cut(s) 277
Hin1II CATG 2 cut(s) 22, 250
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 2 cut(s) 109, 313
HpaII CCGG 2 cut(s) 27, 200
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 1 cut(s) 247
HpyCH4III ACNGT 3 cut(s) 118, 222, 321
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 296
HpyF3I CTNAG 2 cut(s) 260, 279
Hsp92II CATG 2 cut(s) 22, 250
HspAI GCGC 1 cut(s) 275
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 42, 130
LmnI GCTCC 2 cut(s) 54, 288
Lsp1109I GCAGC 1 cut(s) 187
MalI GATC 2 cut(s) 44, 132
MboI GATC 2 cut(s) 42, 130
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 1 cut(s) 153
MroNI GCCGGC 1 cut(s) 199
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 2 cut(s) 27, 200
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 196, 296
NaeI GCCGGC 1 cut(s) 201
NdeII GATC 2 cut(s) 42, 130
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 2 cut(s) 22, 250
PagI TCATGA 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 109, 313
PkrI GCNGC 2 cut(s) 177, 292
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 2 cut(s) 101, 165
RsaNI GTAC 2 cut(s) 100, 164
SatI GCNGC 2 cut(s) 176, 291
Sau3AI GATC 2 cut(s) 42, 130
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 129, 180, 246, 273, 285
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 3 cut(s) 118, 222, 321
TasI AATT 1 cut(s) 181
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 2 cut(s) 109, 313
TscAI CASTG 2 cut(s) 42, 123
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 199
TspRI CASTG 2 cut(s) 42, 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.