AT1G03530

H ACA ribonucleoprotein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012463
Physical Location & Seq
Reverse (-)
880384 .. 883599
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03530.1

Sequence Viewer

Length: 2406 bp
ATGGTTGGATTTCCCGCTAATCAAGCAAAAACCGTTGAAGAAGAGCTACCTTTGCAAGTCGTAGCCGATCAAGACCCCAAGGTAAAAACTTTCAAGGACTCTTTTGATTTCCCTTCCATCGATTCCTTTCCGGATTTCGATTCTATCACTTGGTCTGAGAGTAATCGGAACGTTGAGGATTTTAGCATAGAAGATACGGACTTTGATTTCTTTGAGTACCACATGGAGATACCTCAAGAAGATGTTGTTACTGTTAGCGATGTAATGTGTCCGGAGAATCAGACTACTGTTAATTCTGAGTCGATTGAGGGAAAGCTTGAGGTCTTTAATGATGACATGTCTGGGGAAGTTGGTGTGAGTTCGGTTAGGTCTGAGTCGATGGTTGAAGTAAAGCCTGTGCTTTGTGATGTCATGTCTGAGGAAGTTGGAGTGAGCTCGGTTGAGGTAGAGCCCAATGTTTGTGTTGAGATGTCTGCAAACGGTGGGGATGAACCAGCAGTAAAAGATTCAGAACCGGTTGTTTCTGAAAACTCGAGGTCAATGGAAGGTGAGACTGAGCCAGTTGTTGTGTCTGATGCGTCTGTTGCTTGTCCCACCATGGATTTGGATGAATCAGGGTTGAAGAAAACTGATGAGGGTTTGGCTTGTTCTATTGAAGTAGGGTTGGAGAAGGTAAGTTTGGCCGTGGATGATGATGAGAAGAGTGATGAGGCTAAGGGGGAAATGGATTCTGCTGAGTCTGAGAGCGAAACCTCGAGCTCTTCTGCAAGCAGTAGTGATAGTAGTAGCAGTGAAGAAGAGGAGAGTGATGAGGACGAGAGCGACAAAGAGGAAAATAAGAAGGAAGAAAAGTTTGAACACATGGTTGTGGGGAAAGAGGATGATCTAGCAGGGGAACTTGAAGAGGGTGAGATAGAGAATTTAGATGAGGAGAATGGGGATGACGATATTGAGGATGAGGATGATGATGATGATGATGATGATGATGACGATGATGATGTGAATGAGATGGTTGCTTGGAGCAATGATGAGGATGATGACCTTGGTTTGCAAACAAAAGAACCTATCAGGTCAAAGAATGAGCTCAAGGAGCTTCCTCCAGTTCCTCCTGTGGATGTCACTCTGGAACCACACCATGCCACACTTCCTGTTGGAGTTGTTCTTTCGGTAATGAGCGCACAAGTAATAGTTGAGGGAATGGAAAAGCATAGTCCTTTGACTGAAGGTTCTATCCTTTGGATAACTGAAAAAAGAACGCCATTGGGACTGGTGGATGAGATCTTTGGACCCGTGAAGTGCCCTTATTATATTGTGAGGTTCAATTCAGAGAGTGAAGTGCCAGAAGGGGTTTGTCAAGGGACACCTGTCTCATTTGTCGCCGATTTCGCTCAACATATTCTCAATATCAAGGAACTGCAGAAGAAAGGTTACGATGCATCTGGGGATAACGACGAGGAGATACCAGACGAGCTAGAGTTCTCAGATGATGAAAAAGAAGCCGAATACAGAAGAATGCAGAAGTTGGAAAAGAGAGGAATGATGAGTGACCAGAAAACCGGTAACACCAGGAACAAGAAGAAGAAAAACCGAGATCCCGGAAGGCCTACAAGCAGTTACTCAGGGGAATGGACGAAGAACCAGGGATCTAGTTCTCTATCGTCAAACCGTTCTGATCCTCAAATGGGTGGTCCGCGTCCTCAAATGGACGGTTTTCCTCCAAACAATGCAGCATGGAGACCCCAGAGTAATCAGCAGAACCCATATCAGCTTCCTCCTATACCTAATCAGATGGGAATGCAGATACCTTTCATGGCAATGCAAAATCAAAATCAAATGATGTTCCAACCGCAGTTCAATGGTGGCCAGATGCCAATGCCAGGTGGACCGGGAGGCTTAAACTTCTTTCCAGGACAGGCTTCAGCGCCATGGCCTGCAATGGTAGGTCAGAATTGTTTCAACCAACAGTTTGGGATGGGTCGTGGTATTCAGCAGCAGCCATTACCAAATGAGCTGAGTTTTAATATGTTTTCTCAAGGTCTTCAAATGCACCCACCACAGTCCCAAATGCACCGGCCACAGTCTCAAATGAATCCACAGTTCCAAATGCCACCACAGTTCCAGCCCCACCAGCAATCTCCAATGAACCCGCAGTACCAAATGATGCACCGACCACAGTCTCCAGCGAACCCGCAGTTCCAAATGCAAGCACAATCTGATGTGCGACCACTACAGTCACAAATCCCGCAGTCACCAAGTGATTTGCAGTCCCCAATGGAACCACAATCTCAAGGGTTTAGCAGCGGGCAGTCTTCTGAACGGGGAAGGGGCTTCCATGGTCGTGGTAGAGGTAGAGGGCGGGGTCGCTTCGGACGTGGGCGAGGTAGAGGCCGGCAACAGTCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

801

Amino Acids

88.84

Weight (kDa)

4.25

Isoelectric Point (pI)

67.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 383 - 464 2.8e-17 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1693
AccIII TCCGGA 2 cut(s) 130, 271
AciI CCGC 8 cut(s) 15, 1691, 1847, 2147, 2189, 2243, 2301, 2356
AclI AACGTT 1 cut(s) 171
AclWI GGATC 3 cut(s) 1586, 1651, 1667
AcoI YGGCCR 3 cut(s) 681, 1861, 2072
AcsI RAATTY 1 cut(s) 919
AcuI CTGAAG 2 cut(s) 1242, 1902
AdeI CACNNNGTG 1 cut(s) 2255
AfaI GTAC 2 cut(s) 218, 2153
AfiI CCNNNNNNNGG 2 cut(s) 1682, 1877
AflIII ACRYGT 1 cut(s) 336
AgeI ACCGGT 2 cut(s) 514, 1556
AjiI CACGTC 1 cut(s) 2372
AjnI CCWGG 4 cut(s) 1565, 1638, 1876, 1906
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AluBI AGCT 9 cut(s) 46, 316, 435, 759, 1084, 1093, 1471, 1768, 2011
AluI AGCT 9 cut(s) 46, 316, 435, 759, 1084, 1093, 1471, 1768, 2011
Alw21I GWGCWC 3 cut(s) 437, 761, 1086
Alw26I GTCTC 5 cut(s) 545, 1372, 1729, 2085, 2181
AlwI GGATC 3 cut(s) 1586, 1651, 1667
Ama87I CYCGRG 2 cut(s) 532, 754
Aor13HI TCCGGA 2 cut(s) 130, 271
AoxI GGCC 6 cut(s) 681, 1601, 1861, 1928, 2072, 2386
ApeKI GCWGC 4 cut(s) 1727, 1990, 1993, 2298
ApoI RAATTY 1 cut(s) 919
ArsI GACNNNNNNTTYG 2 cut(s) 1672, 1704
AsiGI ACCGGT 2 cut(s) 514, 1556
Asp700I GAANNNNTTC 1 cut(s) 1952
AspLEI GCGC 2 cut(s) 1178, 1924
AspS9I GGNCC 3 cut(s) 1286, 1688, 1883
AsuC2I CCSGG 2 cut(s) 1596, 1887
AsuHPI GGTGA 3 cut(s) 560, 920, 2241
AvaI CYCGRG 2 cut(s) 532, 754
AvaII GGWCC 3 cut(s) 1286, 1688, 1883
BaeGI GKGCMC 1 cut(s) 1301
BalI TGGCCA 1 cut(s) 1863
BanII GRGCYC 4 cut(s) 437, 453, 761, 1086
BarI GAAGNNNNNNTAC 4 cut(s) 30, 62, 1412, 1444
BbsI GAAGAC 2 cut(s) 2030, 2301
Bbv12I GWGCWC 3 cut(s) 437, 761, 1086
BbvI GCAGC 4 cut(s) 1739, 2002, 2005, 2310
BccI CCATC 5 cut(s) 125, 373, 1003, 1783, 1966
BceAI ACGGC 1 cut(s) 668
BciT130I CCWGG 4 cut(s) 1567, 1640, 1878, 1908
BcnI CCSGG 2 cut(s) 1596, 1887
BcoDI GTCTC 5 cut(s) 545, 1372, 1729, 2085, 2181
BfaI CTAG 3 cut(s) 887, 1472, 1647
BfmI CTRYAG 2 cut(s) 1415, 2228
BfoI RGCGCY 1 cut(s) 1925
BglII AGATCT 1 cut(s) 1278
BisI GCNGC 4 cut(s) 1728, 1991, 1994, 2299
BlsI GCNGC 4 cut(s) 1729, 1992, 1995, 2300
Bme1390I CCNGG 6 cut(s) 1567, 1596, 1640, 1878, 1887, 1908
Bme18I GGWCC 3 cut(s) 1286, 1688, 1883
BmeT110I CYCGRG 2 cut(s) 532, 754
BmgBI CACGTC 1 cut(s) 2372
BmgT120I GGNCC 3 cut(s) 1286, 1688, 1883
BmiI GGNNCC 3 cut(s) 1128, 1288, 2277
BmrFI CCNGG 6 cut(s) 1567, 1596, 1640, 1878, 1887, 1908
BmsI GCATC 5 cut(s) 565, 1423, 1445, 1857, 2151
BoxI GACNNNNGTC 2 cut(s) 1364, 2173
BpiI GAAGAC 2 cut(s) 2030, 2301
BpmI CTGGAG 2 cut(s) 1083, 2163
Bpu10I CCTNAGC 1 cut(s) 714
BpuEI CTTGAG 5 cut(s) 219, 338, 1070, 2016, 2271
BpuMI CCSGG 2 cut(s) 1596, 1887
Bsa29I ATCGAT 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 1729
BsaJI CCNNGG 7 cut(s) 78, 597, 684, 1042, 1639, 1925, 2332
BsaWI WCCGGW 4 cut(s) 130, 271, 514, 1556
Bsc4I CCNNNNNNNGG 2 cut(s) 1682, 1877
Bse118I RCCGGY 4 cut(s) 514, 1556, 2070, 2388
Bse1I ACTGG 3 cut(s) 560, 1100, 1272
Bse3DI GCAATG 3 cut(s) 1030, 1821, 1941
BseAI TCCGGA 2 cut(s) 130, 271
BseBI CCWGG 4 cut(s) 1567, 1640, 1878, 1908
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 7 cut(s) 78, 597, 684, 1042, 1639, 1925, 2332
BseLI CCNNNNNNNGG 2 cut(s) 1682, 1877
BseMI GCAATG 3 cut(s) 1030, 1821, 1941
BseNI ACTGG 3 cut(s) 560, 1100, 1272
BseRI GAGGAG 3 cut(s) 815, 944, 1469
BseSI GKGCMC 1 cut(s) 1301
BseXI GCAGC 4 cut(s) 1739, 2002, 2005, 2310
Bsh1236I CGCG 1 cut(s) 1693
BshFI GGCC 6 cut(s) 683, 1603, 1863, 1930, 2074, 2388
BshTI ACCGGT 2 cut(s) 514, 1556
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 3 cut(s) 437, 761, 1086
BsiHKCI CYCGRG 2 cut(s) 532, 754
BsiSI CCGG 8 cut(s) 131, 272, 515, 1557, 1596, 1886, 2071, 2389
BslFI GGGAC 5 cut(s) 576, 1278, 1372, 2044, 2251
BslI CCNNNNNNNGG 2 cut(s) 1682, 1877
BsmAI GTCTC 5 cut(s) 545, 1372, 1729, 2085, 2181
BsmFI GGGAC 5 cut(s) 576, 1278, 1372, 2044, 2251
BsmI GAATGC 2 cut(s) 1518, 1800
BsnI GGCC 6 cut(s) 683, 1603, 1863, 1930, 2074, 2388
Bso31I GGTCTC 1 cut(s) 1729
BsoBI CYCGRG 2 cut(s) 532, 754
Bsp1286I GDGCHC 5 cut(s) 437, 453, 761, 1086, 1301
Bsp13I TCCGGA 2 cut(s) 130, 271
Bsp143I GATC 6 cut(s) 67, 883, 1278, 1591, 1643, 1672
Bsp19I CCATGG 3 cut(s) 597, 1925, 2332
BspACI CCGC 8 cut(s) 15, 1691, 1847, 2147, 2189, 2243, 2301, 2356
BspANI GGCC 6 cut(s) 683, 1603, 1863, 1930, 2074, 2388
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 2 cut(s) 130, 271
BspFNI CGCG 1 cut(s) 1693
BspLI GGNNCC 3 cut(s) 1128, 1288, 2277
BspMAI CTGCAG 1 cut(s) 1419
BspPI GGATC 3 cut(s) 1586, 1651, 1667
BspQI GCTCTTC 2 cut(s) 36, 766
BspTNI GGTCTC 1 cut(s) 1729
BsrDI GCAATG 3 cut(s) 1030, 1821, 1941
BsrFI RCCGGY 4 cut(s) 514, 1556, 2070, 2388
BsrI ACTGG 3 cut(s) 560, 1100, 1272
BssAI RCCGGY 4 cut(s) 514, 1556, 2070, 2388
BssECI CCNNGG 7 cut(s) 78, 597, 684, 1042, 1639, 1925, 2332
BssMI GATC 6 cut(s) 67, 883, 1278, 1591, 1643, 1672
BssT1I CCWWGG 5 cut(s) 78, 597, 1042, 1925, 2332
Bst2UI CCWGG 4 cut(s) 1567, 1640, 1878, 1908
Bst6I CTCTTC 5 cut(s) 36, 695, 766, 792, 897
BstC8I GCNNGC 5 cut(s) 769, 1932, 2205, 2303, 2390
BstDSI CCRYGG 4 cut(s) 597, 684, 1925, 2332
BstFNI CGCG 1 cut(s) 1693
BstH2I RGCGCY 1 cut(s) 1925
BstHHI GCGC 2 cut(s) 1178, 1924
BstKTI GATC 6 cut(s) 70, 886, 1281, 1594, 1646, 1675
BstMAI GTCTC 5 cut(s) 545, 1372, 1729, 2085, 2181
BstMBI GATC 6 cut(s) 67, 883, 1278, 1591, 1643, 1672
BstMWI GCNNNNNNNGC 6 cut(s) 23, 52, 584, 1090, 1385, 2128
BstNI CCWGG 4 cut(s) 1567, 1640, 1878, 1908
BstNSI RCATGY 1 cut(s) 340
BstPAI GACNNNNGTC 2 cut(s) 1364, 2173
BstSCI CCNGG 6 cut(s) 1565, 1594, 1638, 1876, 1885, 1906
BstSFI CTRYAG 2 cut(s) 1415, 2228
BstSLI GKGCMC 1 cut(s) 1301
BstUI CGCG 1 cut(s) 1693
BstV1I GCAGC 4 cut(s) 1739, 2002, 2005, 2310
BstV2I GAAGAC 2 cut(s) 2030, 2301
BstX2I RGATCY 3 cut(s) 1278, 1591, 1643
BstXI CCANNNNNNTGG 3 cut(s) 604, 1967, 2339
BstYI RGATCY 3 cut(s) 1278, 1591, 1643
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 6 cut(s) 683, 1603, 1863, 1930, 2074, 2388
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 4 cut(s) 597, 684, 1925, 2332
BtgZI GCGATG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 2372
BtsI GCAGTG 1 cut(s) 796
BtsIMutI CAGTG 1 cut(s) 796
Cac8I GCNNGC 5 cut(s) 769, 1932, 2205, 2303, 2390
CfoI GCGC 2 cut(s) 1178, 1924
Cfr10I RCCGGY 4 cut(s) 514, 1556, 2070, 2388
Cfr13I GGNCC 3 cut(s) 1286, 1688, 1883
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 2 cut(s) 567, 1682
Csp6I GTAC 2 cut(s) 217, 2152
CspAI ACCGGT 2 cut(s) 514, 1556
CviQI GTAC 2 cut(s) 217, 2152
DpnI GATC 6 cut(s) 69, 885, 1280, 1593, 1645, 1674
DpnII GATC 6 cut(s) 67, 883, 1278, 1591, 1643, 1672
DraIII CACNNNGTG 1 cut(s) 2255
EaeI YGGCCR 3 cut(s) 681, 1861, 2072
Eam1104I CTCTTC 5 cut(s) 36, 695, 766, 792, 897
EarI CTCTTC 5 cut(s) 36, 695, 766, 792, 897
Ecl136II GAGCTC 3 cut(s) 435, 759, 1084
Eco130I CCWWGG 5 cut(s) 78, 597, 1042, 1925, 2332
Eco147I AGGCCT 1 cut(s) 1603
Eco24I GRGCYC 4 cut(s) 437, 453, 761, 1086
Eco31I GGTCTC 1 cut(s) 1729
Eco47I GGWCC 3 cut(s) 1286, 1688, 1883
Eco53kI GAGCTC 3 cut(s) 435, 759, 1084
Eco57I CTGAAG 2 cut(s) 1242, 1902
Eco88I CYCGRG 2 cut(s) 532, 754
EcoICRI GAGCTC 3 cut(s) 435, 759, 1084
EcoRII CCWGG 4 cut(s) 1565, 1638, 1876, 1906
EcoT14I CCWWGG 5 cut(s) 78, 597, 1042, 1925, 2332
EcoT22I ATGCAT 1 cut(s) 1438
EcoT38I GRGCYC 4 cut(s) 437, 453, 761, 1086
ErhI CCWWGG 5 cut(s) 78, 597, 1042, 1925, 2332
FaqI GGGAC 5 cut(s) 576, 1278, 1372, 2044, 2251
FauI CCCGC 6 cut(s) 22, 2154, 2196, 2250, 2294, 2349
Fnu4HI GCNGC 4 cut(s) 1728, 1991, 1994, 2299
FriOI GRGCYC 4 cut(s) 437, 453, 761, 1086
Fsp4HI GCNGC 4 cut(s) 1728, 1991, 1994, 2299
FspBI CTAG 3 cut(s) 887, 1472, 1647
GlaI GCGC 2 cut(s) 1177, 1923
GluI GCNGC 4 cut(s) 1728, 1991, 1994, 2299
GsuI CTGGAG 2 cut(s) 1083, 2163
HaeII RGCGCY 1 cut(s) 1925
HaeIII GGCC 6 cut(s) 683, 1603, 1863, 1930, 2074, 2388
HapII CCGG 8 cut(s) 131, 272, 515, 1557, 1596, 1886, 2071, 2389
HgaI GACGC 2 cut(s) 567, 1682
HhaI GCGC 2 cut(s) 1178, 1924
Hin6I GCGC 2 cut(s) 1176, 1922
HinP1I GCGC 2 cut(s) 1176, 1922
HindIII AAGCTT 1 cut(s) 314
HpaII CCGG 8 cut(s) 131, 272, 515, 1557, 1596, 1886, 2071, 2389
HphI GGTGA 3 cut(s) 560, 920, 2241
Hpy166II GTNNAC 1 cut(s) 1883
Hpy188III TCNNGA 6 cut(s) 71, 131, 236, 272, 1124, 2400
Hpy8I GTNNAC 1 cut(s) 1883
Hpy99I CGWCG 1 cut(s) 1454
HpyAV CCTTC 8 cut(s) 123, 539, 664, 835, 1217, 1337, 1593, 2316
HpyCH4IV ACGT 2 cut(s) 171, 2371
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 52, 584, 1090, 1385, 2128
HpySE526I ACGT 2 cut(s) 171, 2371
HspAI GCGC 2 cut(s) 1176, 1922
Kpn2I TCCGGA 2 cut(s) 130, 271
KroI GCCGGC 1 cut(s) 2388
KroNI GCCGGC 1 cut(s) 2390
Kzo9I GATC 6 cut(s) 67, 883, 1278, 1591, 1643, 1672
LguI GCTCTTC 2 cut(s) 36, 766
LmnI GCTCC 2 cut(s) 1020, 1090
Lsp1109I GCAGC 4 cut(s) 1739, 2002, 2005, 2310
LweI GCATC 5 cut(s) 565, 1423, 1445, 1857, 2151
MaeI CTAG 3 cut(s) 887, 1472, 1647
MaeII ACGT 2 cut(s) 171, 2371
MaeIII GTNAC 8 cut(s) 247, 1117, 1427, 1544, 1559, 1613, 2232, 2247
MalI GATC 6 cut(s) 69, 885, 1280, 1593, 1645, 1674
MboI GATC 6 cut(s) 67, 883, 1278, 1591, 1643, 1672
MflI RGATCY 3 cut(s) 1278, 1591, 1643
MhlI GDGCHC 5 cut(s) 437, 453, 761, 1086, 1301
MlsI TGGCCA 1 cut(s) 1863
MluCI AATT 4 cut(s) 292, 919, 1321, 1948
MluNI TGGCCA 1 cut(s) 1863
MlyI GAGTC 4 cut(s) 92, 308, 383, 746
MmeI TCCRAC 5 cut(s) 406, 645, 1132, 1503, 1867
Mox20I TGGCCA 1 cut(s) 1863
Mph1103I ATGCAT 1 cut(s) 1438
MroI TCCGGA 2 cut(s) 130, 271
MroNI GCCGGC 1 cut(s) 2388
MroXI GAANNNNTTC 1 cut(s) 1952
MscI TGGCCA 1 cut(s) 1863
MseI TTAA 4 cut(s) 291, 327, 1895, 2019
MslI CAYNNNNRTG 3 cut(s) 866, 1814, 2337
Msp20I TGGCCA 1 cut(s) 1863
MspA1I CMGCKG 1 cut(s) 2301
MspI CCGG 8 cut(s) 131, 272, 515, 1557, 1596, 1886, 2071, 2389
MspR9I CCNGG 6 cut(s) 1567, 1596, 1640, 1878, 1887, 1908
Mva1269I GAATGC 2 cut(s) 1518, 1800
MvaI CCWGG 4 cut(s) 1567, 1640, 1878, 1908
MvnI CGCG 1 cut(s) 1693
MwoI GCNNNNNNNGC 6 cut(s) 23, 52, 584, 1090, 1385, 2128
NaeI GCCGGC 1 cut(s) 2390
NciI CCSGG 2 cut(s) 1596, 1887
NcoI CCATGG 3 cut(s) 597, 1925, 2332
NdeII GATC 6 cut(s) 67, 883, 1278, 1591, 1643, 1672
NgoMIV GCCGGC 1 cut(s) 2388
NlaIV GGNNCC 3 cut(s) 1128, 1288, 2277
NmuCI GTSAC 4 cut(s) 1117, 1544, 2232, 2247
NsiI ATGCAT 1 cut(s) 1438
NspI RCATGY 1 cut(s) 340
PaeR7I CTCGAG 2 cut(s) 532, 754
PceI AGGCCT 1 cut(s) 1603
PciI ACATGT 1 cut(s) 336
PciSI GCTCTTC 2 cut(s) 36, 766
PcsI WCGNNNNNNNCGW 1 cut(s) 2368
PctI GAATGC 2 cut(s) 1518, 1800
PdiI GCCGGC 1 cut(s) 2390
PdmI GAANNNNTTC 1 cut(s) 1952
PfeI GAWTC 7 cut(s) 122, 140, 277, 506, 611, 728, 2089
PfoI TCCNGGA 2 cut(s) 1594, 1906
PinAI ACCGGT 2 cut(s) 514, 1556
PkrI GCNGC 4 cut(s) 1729, 1992, 1995, 2300
PleI GAGTC 4 cut(s) 92, 307, 382, 745
PpsI GAGTC 4 cut(s) 92, 307, 382, 745
PscI ACATGT 1 cut(s) 336
PshAI GACNNNNGTC 2 cut(s) 1364, 2173
Psp124BI GAGCTC 3 cut(s) 437, 761, 1086
Psp1406I AACGTT 1 cut(s) 171
Psp6I CCWGG 4 cut(s) 1565, 1638, 1876, 1906
PspGI CCWGG 4 cut(s) 1565, 1638, 1876, 1906
PspN4I GGNNCC 3 cut(s) 1128, 1288, 2277
PspPI GGNCC 3 cut(s) 1286, 1688, 1883
PspXI VCTCGAGB 2 cut(s) 532, 754
PsrI GAACNNNNNNTAC 2 cut(s) 2135, 2167
PstI CTGCAG 1 cut(s) 1419
PsuI RGATCY 3 cut(s) 1278, 1591, 1643
RsaI GTAC 2 cut(s) 218, 2153
RsaNI GTAC 2 cut(s) 217, 2152
RseI CAYNNNNRTG 3 cut(s) 866, 1814, 2337
SacI GAGCTC 3 cut(s) 437, 761, 1086
SapI GCTCTTC 2 cut(s) 36, 766
SaqAI TTAA 4 cut(s) 291, 327, 1895, 2019
SatI GCNGC 4 cut(s) 1728, 1991, 1994, 2299
Sau3AI GATC 6 cut(s) 67, 883, 1278, 1591, 1643, 1672
Sau96I GGNCC 3 cut(s) 1286, 1688, 1883
SchI GAGTC 4 cut(s) 92, 308, 383, 746
ScrFI CCNGG 6 cut(s) 1567, 1596, 1640, 1878, 1887, 1908
SduI GDGCHC 5 cut(s) 437, 453, 761, 1086, 1301
SfaNI GCATC 5 cut(s) 565, 1423, 1445, 1857, 2151
SfcI CTRYAG 2 cut(s) 1415, 2228
Sfr274I CTCGAG 2 cut(s) 532, 754
SinI GGWCC 3 cut(s) 1286, 1688, 1883
SlaI CTCGAG 2 cut(s) 532, 754
SmiMI CAYNNNNRTG 3 cut(s) 866, 1814, 2337
SmlI CTYRAG 7 cut(s) 234, 317, 532, 754, 1085, 2031, 2286
SmoI CTYRAG 7 cut(s) 234, 317, 532, 754, 1085, 2031, 2286
Sse9I AATT 4 cut(s) 292, 919, 1321, 1948
SseBI AGGCCT 1 cut(s) 1603
SsiI CCGC 8 cut(s) 15, 1691, 1847, 2147, 2189, 2243, 2301, 2356
SspMI CTAG 3 cut(s) 887, 1472, 1647
SstI GAGCTC 3 cut(s) 437, 761, 1086
StuI AGGCCT 1 cut(s) 1603
StyD4I CCNGG 6 cut(s) 1565, 1594, 1638, 1876, 1885, 1906
StyI CCWWGG 5 cut(s) 78, 597, 1042, 1925, 2332
TaiI ACGT 2 cut(s) 174, 2374
TaqI TCGA 6 cut(s) 120, 138, 302, 377, 533, 755
TasI AATT 4 cut(s) 292, 919, 1321, 1948
TfiI GAWTC 7 cut(s) 122, 140, 277, 506, 611, 728, 2089
Tru1I TTAA 4 cut(s) 291, 327, 1895, 2019
Tru9I TTAA 4 cut(s) 291, 327, 1895, 2019
TscAI CASTG 1 cut(s) 796
TseFI GTSAC 4 cut(s) 1117, 1544, 2232, 2247
TseI GCWGC 4 cut(s) 1727, 1990, 1993, 2298
Tsp45I GTSAC 4 cut(s) 1117, 1544, 2232, 2247
TspDTI ATGAA 6 cut(s) 504, 624, 1503, 1798, 2102, 2156
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 1 cut(s) 796
VpaK11BI GGWCC 3 cut(s) 1286, 1688, 1883
XapI RAATTY 1 cut(s) 919
XceI RCATGY 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XhoI CTCGAG 2 cut(s) 532, 754
XmnI GAANNNNTTC 1 cut(s) 1952
XspI CTAG 3 cut(s) 887, 1472, 1647
Zsp2I ATGCAT 1 cut(s) 1438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.