pycom09g01750

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012463
Physical Location & Seq
Forward (+)
1339613 .. 1342621
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g01750.1

Sequence Viewer

Length: 2220 bp
ATGGTAGGGCTCATCCCTCAGCTAACACTCGAAAGCCTCGAACGAGCTTCAAAGCCCAAGAATTTAAAGGACCCGCCCGACCCCGTTGATCCCCGAGACTTGTCGGTTGCAGATTCGTTCTTGGATTTTGATTCCATAGAGGATTGGTTCAAGAATATTCCGAGTTCTGATATGGCCGAAACAGGGCAGGTTAAGGCTGATGCTGTTGAAGCAGAGTATATTGGAGGTGGGTTCGAGCCGGCCGGTGGTGGGTCTGAGCCGATTGATTGTGGGTCTGGTTTTGTGGTGAAGTTGGAGGGTCAACTGTTGGAGAATTCGGGTTGTTCGATTGCGGAAGAGTTGGGAAAGGTTAATTTGCTTGGAGGGTGTGAAGAAAGTTCGGTTCTTGATGGTCGGAATGGTGTGAAGAGTGAAACAGTGACGCGTGATATCGTGGAAATGGAACCGGTGAGTAATGAGAATGAGAGTGAGGTTTCAAAGTCGAAGTTCGAAGGCGAAAATGGGGTGGGGAGTGAAATGGTGGGTGGGAATGGTGGGAAGAGTGGAGCAGGGACTAGTGAGTCCGAGAGTGAAAGCTCGGAGTCTGAGAGTGAGAGTTCGGAGTCATCATCATCGTCGTCTGAGAGTGGTAGCTCTAGTGATGATGATGAAAAGGAAAACAGGAAAGGGAAAATGAATGTGGAGGTGGAGGAGAGGGACGAGGGTGGTGAAATGGAAGAAGGTGAGATAAGGGATGCTGATGGAGGAGAGAAGGAAGATACGACATTCGATAAAGATAATGAAATTTTTGATGATGAAGATGAAGATGAATTGGTTACTTGGACCGATGCTGAAACTTTTGATGAGGGAGACGGCGATGAGGATGATCTTGGAGATCTGAAAGGACCCATTAGGTCCAAGAATGAGCTTGAGGTGCTTCCCCCAATTCCTCCAGTGGAGGTGACCTTGCAACCACATCATCAGATGCAACCTGTGGGAGCTGTCTTATCGGTTCTTGGTACCCAAGTCATTGTAGAAGGGGTCAAGAAGCACAACCCTTTAAACGAGGGTTCAATTTTGTGGATAACCGAAAGCAGATCTCCGTTGGGGTTGATAGATGAAATCTTTGGACCTGTGATACAGCCTTATTATGTGGTGCGATACAATTCAGAAAGTGAAATCCCTAGTGGAATACAAGCGGGCATTTTGATCTCTTTTGTTCCGGAGTTTGCAGATCATGTGCTGAATAACAAGGATGTTTACAAAAAGGGTTATGATGCATCTGGTGCAAATGATGAAGAGATATTTGATGAGGCAGAATTTTCGGATGATGAGAAAGAGGCTGAATACAGGAGGATGCAAAAAATGTCAAAGAGGGGAATGAGTGACCAAAATGCTGGCAACAAGAAATACGACAAAAAGAAGGGTAAAAATAAGCCGGGACCTTGGAATAGTGGTCAACCTTCACCCAAGAAAGCACCAACGGATGCAGGTCAGCAGCCTCCCAATCAACACCATCTTCATTTCTCTCCAGGTGCACCATCTTCTTCTGCAGTATCACAAGGATTGGCTAGTGGGACTGGATTAGTTCCACCATTTCCAGCTCCTACACTGCCTGCTGGTATCAACGCAACTTCAAATGGACTGTGGACAAATGGAACGCCGTTTCAACCACAAAATACATCCTTCCCTAATGGATTTCTAAATAATAGTTTGCCATGTCTTCCACAGTATAATCCTCAATATCCGTATCAAATGTCTATTCCAAACAGAATGCCGTTCTATCAGCAGGCAGGTGCTGTCCTACCAGGTCAACAGTCGAATGTCTTTACAGGACCCGTATATTCACAAGGGATGGTGGGTCAACACGGCTTCAATCAGGAAGCATTTGGGATAGGTTTACAGGGCCAACCCATTCCAGGCCAACAATTCAATGCCTTTGCAGGACCCATGTATCCACAGGGACAGGGGCTGGTGGGTCAACTTGGTTTCAACCAAAACGCATTCGGGATGGGTTTACAGGGCCAACCTACTCACCCGATGTTCAATGCAGAACAAGGAATGCCGTCAAATGGATTACGTGCTGAACAGAACCATAATATGCCACAACCTGCTGGAAATGCAGGCAACTTGGACAGCCAGCAATTTAGTCAGGGCGCATCTTCTAATCGTGGAAGGAGACCCTCCCATCGTGGGGGTCGTCATTTTGGAAGGGGAAGAGGTAGGCAGCACTCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

740

Amino Acids

79.48

Weight (kDa)

4.52

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 323 - 402 8.5e-16 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1763
AasI GACNNNNNNGTC 1 cut(s) 559
Acc36I ACCTGC 4 cut(s) 178, 1460, 1763, 2098
Acc65I GGTACC 1 cut(s) 998
AccB1I GGYRCC 1 cut(s) 998
AccII CGCG 1 cut(s) 424
AccIII TCCGGA 1 cut(s) 1201
AciI CCGC 3 cut(s) 74, 332, 1178
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 2 cut(s) 174, 240
AcsI RAATTY 4 cut(s) 61, 313, 783, 1298
AfaI GTAC 1 cut(s) 1000
AfiI CCNNNNNNNGG 7 cut(s) 183, 245, 249, 1898, 2051, 2172, 2173
AflIII ACRYGT 1 cut(s) 422
AgeI ACCGGT 1 cut(s) 445
AhlI ACTAGT 1 cut(s) 554
AjnI CCWGG 3 cut(s) 1510, 1786, 1897
AluBI AGCT 7 cut(s) 22, 47, 576, 633, 907, 980, 1583
AluI AGCT 7 cut(s) 22, 47, 576, 633, 907, 980, 1583
Alw21I GWGCWC 1 cut(s) 1519
Alw26I GTCTC 3 cut(s) 90, 843, 2152
Alw44I GTGCAC 1 cut(s) 1515
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 2 cut(s) 1778, 1951
Ama87I CYCGRG 2 cut(s) 93, 2212
Aor13HI TCCGGA 1 cut(s) 1201
AoxI GGCC 5 cut(s) 174, 240, 1885, 1900, 2002
ApaLI GTGCAC 1 cut(s) 1515
ApeKI GCWGC 2 cut(s) 1477, 2206
ApoI RAATTY 4 cut(s) 61, 313, 783, 1298
AsiGI ACCGGT 1 cut(s) 445
Asp718I GGTACC 1 cut(s) 998
AspLEI GCGC 1 cut(s) 2138
AsuC2I CCSGG 1 cut(s) 1419
AsuHPI GGTGA 7 cut(s) 298, 460, 719, 734, 952, 1437, 2006
AsuII TTCGAA 1 cut(s) 489
AvaI CYCGRG 2 cut(s) 93, 2212
AvaII GGWCC 8 cut(s) 70, 822, 884, 894, 1109, 1421, 1814, 1925
BaeGI GKGCMC 1 cut(s) 1519
BaeI ACNNNNGTAYC 4 cut(s) 990, 1023, 1916, 1949
BanI GGYRCC 1 cut(s) 998
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 1694
Bbv12I GWGCWC 1 cut(s) 1519
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 1489
BccI CCATC 7 cut(s) 383, 734, 1503, 1528, 1828, 1984, 2175
BceAI ACGGC 5 cut(s) 868, 1627, 1741, 1864, 2029
BcgI CGANNNNNNTGC 2 cut(s) 1284, 1318
BciT130I CCWGG 3 cut(s) 1512, 1788, 1899
BciVI GTATCC 1 cut(s) 1944
BcnI CCSGG 1 cut(s) 1419
BcoDI GTCTC 3 cut(s) 90, 843, 2152
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 4 cut(s) 555, 636, 1164, 1551
BfmI CTRYAG 1 cut(s) 1530
BfuAI ACCTGC 4 cut(s) 178, 1460, 1763, 2098
BfuI GTATCC 1 cut(s) 1944
BglII AGATCT 2 cut(s) 874, 1076
BisI GCNGC 2 cut(s) 1478, 2207
BlsI GCNGC 2 cut(s) 1479, 2208
Bme1390I CCNGG 4 cut(s) 1419, 1512, 1788, 1899
Bme18I GGWCC 8 cut(s) 70, 822, 884, 894, 1109, 1421, 1814, 1925
BmeT110I CYCGRG 2 cut(s) 93, 2212
BmiI GGNNCC 7 cut(s) 72, 444, 886, 1000, 1422, 1816, 1927
BmrFI CCNGG 4 cut(s) 1419, 1512, 1788, 1899
BmsI GCATC 9 cut(s) 190, 724, 817, 954, 1246, 1268, 1326, 1456, 2147
BpiI GAAGAC 1 cut(s) 1694
BpmI CTGGAG 2 cut(s) 915, 1494
Bpu10I CCTNAGC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 929
BpuMI CCSGG 1 cut(s) 1419
BsaAI YACGTR 1 cut(s) 2060
BsaI GGTCTC 1 cut(s) 2152
BsaJI CCNNGG 1 cut(s) 1424
BsaWI WCCGGW 2 cut(s) 445, 1201
Bsc4I CCNNNNNNNGG 7 cut(s) 183, 245, 249, 1898, 2051, 2172, 2173
Bse118I RCCGGY 3 cut(s) 238, 242, 445
Bse1I ACTGG 2 cut(s) 932, 1564
BseAI TCCGGA 1 cut(s) 1201
BseBI CCWGG 3 cut(s) 1512, 1788, 1899
BseDI CCNNGG 1 cut(s) 1424
BseLI CCNNNNNNNGG 7 cut(s) 183, 245, 249, 1898, 2051, 2172, 2173
BseMII CTCAG 4 cut(s) 32, 246, 576, 612
BseNI ACTGG 2 cut(s) 932, 1564
BseRI GAGGAG 2 cut(s) 704, 759
BseSI GKGCMC 1 cut(s) 1519
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 1489
Bsh1236I CGCG 1 cut(s) 424
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 5 cut(s) 176, 242, 1887, 1902, 2004
BshNI GGYRCC 1 cut(s) 998
BshTI ACCGGT 1 cut(s) 445
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 1519
BsiHKCI CYCGRG 2 cut(s) 93, 2212
BsiSI CCGG 5 cut(s) 239, 243, 446, 1202, 1418
BslFI GGGAC 5 cut(s) 565, 710, 1434, 1570, 1956
BslI CCNNNNNNNGG 7 cut(s) 183, 245, 249, 1898, 2051, 2172, 2173
BsmAI GTCTC 3 cut(s) 90, 843, 2152
BsmBI CGTCTC 1 cut(s) 843
BsmFI GGGAC 5 cut(s) 565, 710, 1434, 1570, 1956
BsmI GAATGC 3 cut(s) 1758, 1982, 2046
BsnI GGCC 5 cut(s) 176, 242, 1887, 1902, 2004
Bso31I GGTCTC 1 cut(s) 2152
BsoBI CYCGRG 2 cut(s) 93, 2212
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 12, 1519
Bsp13I TCCGGA 1 cut(s) 1201
Bsp143I GATC 6 cut(s) 88, 865, 874, 1076, 1188, 1213
BspACI CCGC 3 cut(s) 74, 332, 1178
BspANI GGCC 5 cut(s) 176, 242, 1887, 1902, 2004
BspCNI CTCAG 4 cut(s) 31, 247, 577, 613
BspEI TCCGGA 1 cut(s) 1201
BspFNI CGCG 1 cut(s) 424
BspLI GGNNCC 7 cut(s) 72, 444, 886, 1000, 1422, 1816, 1927
BspMAI CTGCAG 1 cut(s) 1534
BspMI ACCTGC 4 cut(s) 178, 1460, 1763, 2098
BspPI GGATC 1 cut(s) 83
BspT104I TTCGAA 1 cut(s) 489
BspT107I GGYRCC 1 cut(s) 998
BspTNI GGTCTC 1 cut(s) 2152
BsrFI RCCGGY 3 cut(s) 238, 242, 445
BsrI ACTGG 2 cut(s) 932, 1564
BssAI RCCGGY 3 cut(s) 238, 242, 445
BssECI CCNNGG 1 cut(s) 1424
BssMI GATC 6 cut(s) 88, 865, 874, 1076, 1188, 1213
BssT1I CCWWGG 1 cut(s) 1424
Bst2UI CCWGG 3 cut(s) 1512, 1788, 1899
Bst4CI ACNGT 5 cut(s) 306, 418, 1626, 1710, 1797
Bst6I CTCTTC 5 cut(s) 330, 401, 533, 1272, 2191
BstAPI GCANNNNNTGC 1 cut(s) 1265
BstBAI YACGTR 1 cut(s) 2060
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 7 cut(s) 240, 1180, 1378, 1596, 1770, 2104, 2120
BstDEI CTNAG 4 cut(s) 18, 255, 585, 621
BstEII GGTNACC 1 cut(s) 940
BstFNI CGCG 1 cut(s) 424
BstHHI GCGC 1 cut(s) 2138
BstKTI GATC 6 cut(s) 91, 868, 877, 1079, 1191, 1216
BstMAI GTCTC 3 cut(s) 90, 843, 2152
BstMBI GATC 6 cut(s) 88, 865, 874, 1076, 1188, 1213
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 4 cut(s) 209, 913, 1265, 2099
BstNI CCWGG 3 cut(s) 1512, 1788, 1899
BstPI GGTNACC 1 cut(s) 940
BstSCI CCNGG 4 cut(s) 1417, 1510, 1786, 1897
BstSFI CTRYAG 1 cut(s) 1530
BstSLI GKGCMC 1 cut(s) 1519
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 1 cut(s) 1489
BstV2I GAAGAC 1 cut(s) 1694
BstX2I RGATCY 2 cut(s) 874, 1076
BstXI CCANNNNNNTGG 1 cut(s) 1376
BstYI RGATCY 2 cut(s) 874, 1076
BstZI CGGCCG 1 cut(s) 240
BsuI GTATCC 1 cut(s) 1944
BsuRI GGCC 5 cut(s) 176, 242, 1887, 1902, 2004
BtgZI GCGATG 1 cut(s) 870
BtsI GCAGTG 1 cut(s) 1589
BtsIMutI CAGTG 3 cut(s) 423, 939, 1589
BveI ACCTGC 4 cut(s) 178, 1460, 1763, 2098
Cac8I GCNNGC 7 cut(s) 240, 1180, 1378, 1596, 1770, 2104, 2120
CaiI CAGNNNCTG 2 cut(s) 1778, 1951
CfoI GCGC 1 cut(s) 2138
Cfr10I RCCGGY 3 cut(s) 238, 242, 445
CseI GACGC 1 cut(s) 430
CsiI ACCWGGT 1 cut(s) 1786
Csp6I GTAC 1 cut(s) 999
CspAI ACCGGT 1 cut(s) 445
CviAII CATG 3 cut(s) 1217, 1698, 1930
CviQI GTAC 1 cut(s) 999
DdeI CTNAG 4 cut(s) 18, 255, 585, 621
DpnI GATC 6 cut(s) 90, 867, 876, 1078, 1190, 1215
DpnII GATC 6 cut(s) 88, 865, 874, 1076, 1188, 1213
DraI TTTAAA 2 cut(s) 66, 1041
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
EaeI YGGCCR 2 cut(s) 174, 240
EagI CGGCCG 1 cut(s) 240
Eam1104I CTCTTC 5 cut(s) 330, 401, 533, 1272, 2191
EarI CTCTTC 5 cut(s) 330, 401, 533, 1272, 2191
EclXI CGGCCG 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 1424
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 2152
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 8 cut(s) 70, 822, 884, 894, 1109, 1421, 1814, 1925
Eco52I CGGCCG 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 93, 2212
Eco91I GGTNACC 1 cut(s) 940
EcoO109I RGGNCCY 5 cut(s) 70, 884, 1421, 1814, 1925
EcoO65I GGTNACC 1 cut(s) 940
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 3 cut(s) 1510, 1786, 1897
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 1424
EcoT22I ATGCAT 1 cut(s) 1261
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 1424
Esp3I CGTCTC 1 cut(s) 843
FaeI CATG 3 cut(s) 1220, 1701, 1933
FaqI GGGAC 5 cut(s) 565, 710, 1434, 1570, 1956
FatI CATG 3 cut(s) 1216, 1697, 1929
FauI CCCGC 2 cut(s) 81, 1171
Fnu4HI GCNGC 2 cut(s) 1478, 2207
FokI GGATG 9 cut(s) 746, 875, 1247, 1319, 1348, 1478, 1648, 1846, 2002
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 1478, 2207
FspBI CTAG 4 cut(s) 555, 636, 1164, 1551
GlaI GCGC 1 cut(s) 2137
GluI GCNGC 2 cut(s) 1478, 2207
GsuI CTGGAG 2 cut(s) 915, 1494
HaeIII GGCC 5 cut(s) 176, 242, 1887, 1902, 2004
HapII CCGG 5 cut(s) 239, 243, 446, 1202, 1418
HgaI GACGC 1 cut(s) 430
HhaI GCGC 1 cut(s) 2138
Hin1II CATG 3 cut(s) 1220, 1701, 1933
Hin6I GCGC 1 cut(s) 2136
HinP1I GCGC 1 cut(s) 2136
HincII GTYRAC 5 cut(s) 302, 1439, 1793, 1844, 1961
HindII GTYRAC 5 cut(s) 302, 1439, 1793, 1844, 1961
HinfI GANTC 5 cut(s) 113, 131, 560, 581, 602
HpaII CCGG 5 cut(s) 239, 243, 446, 1202, 1418
HphI GGTGA 7 cut(s) 298, 460, 719, 734, 952, 1437, 2006
Hpy188III TCNNGA 6 cut(s) 151, 386, 1024, 1202, 1859, 1987
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 9 cut(s) 485, 713, 745, 1010, 1396, 1452, 1675, 2148, 2184
HpyCH4III ACNGT 5 cut(s) 306, 418, 1626, 1710, 1797
HpyCH4IV ACGT 1 cut(s) 2059
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 913, 1265, 2099
HpyF3I CTNAG 4 cut(s) 18, 255, 585, 621
HpySE526I ACGT 1 cut(s) 2059
Hsp92II CATG 3 cut(s) 1220, 1701, 1933
HspAI GCGC 1 cut(s) 2136
Kpn2I TCCGGA 1 cut(s) 1201
KpnI GGTACC 1 cut(s) 1002
KroI GCCGGC 1 cut(s) 238
KroNI GCCGGC 1 cut(s) 240
Kzo9I GATC 6 cut(s) 88, 865, 874, 1076, 1188, 1213
LmnI GCTCC 3 cut(s) 545, 977, 1588
Lsp1109I GCAGC 1 cut(s) 1489
LweI GCATC 9 cut(s) 190, 724, 817, 954, 1246, 1268, 1326, 1456, 2147
MabI ACCWGGT 1 cut(s) 1786
MaeI CTAG 4 cut(s) 555, 636, 1164, 1551
MaeII ACGT 1 cut(s) 2059
MaeIII GTNAC 4 cut(s) 418, 814, 940, 1364
MalI GATC 6 cut(s) 90, 867, 876, 1078, 1190, 1215
MboI GATC 6 cut(s) 88, 865, 874, 1076, 1188, 1213
MflI RGATCY 2 cut(s) 874, 1076
MhlI GDGCHC 2 cut(s) 12, 1519
MluI ACGCGT 1 cut(s) 422
MlyI GAGTC 3 cut(s) 569, 590, 611
MmeI TCCRAC 3 cut(s) 273, 288, 374
Mph1103I ATGCAT 1 cut(s) 1261
MroI TCCGGA 1 cut(s) 1201
MroNI GCCGGC 1 cut(s) 238
MseI TTAA 4 cut(s) 65, 192, 351, 1040
MspI CCGG 5 cut(s) 239, 243, 446, 1202, 1418
MspR9I CCNGG 4 cut(s) 1419, 1512, 1788, 1899
Mva1269I GAATGC 3 cut(s) 1758, 1982, 2046
MvaI CCWGG 3 cut(s) 1512, 1788, 1899
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 4 cut(s) 209, 913, 1265, 2099
NaeI GCCGGC 1 cut(s) 240
NciI CCSGG 1 cut(s) 1419
NdeII GATC 6 cut(s) 88, 865, 874, 1076, 1188, 1213
NgoMIV GCCGGC 1 cut(s) 238
NlaIII CATG 3 cut(s) 1220, 1701, 1933
NlaIV GGNNCC 7 cut(s) 72, 444, 886, 1000, 1422, 1816, 1927
NmuCI GTSAC 3 cut(s) 418, 940, 1364
NsiI ATGCAT 1 cut(s) 1261
NspV TTCGAA 1 cut(s) 489
PaeR7I CTCGAG 1 cut(s) 2212
PaqCI CACCTGC 1 cut(s) 1763
PcsI WCGNNNNNNNCGW 3 cut(s) 36, 323, 2176
PctI GAATGC 3 cut(s) 1758, 1982, 2046
PdiI GCCGGC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 113, 131
PinAI ACCGGT 1 cut(s) 445
PkrI GCNGC 2 cut(s) 1479, 2208
PleI GAGTC 3 cut(s) 568, 589, 610
PpsI GAGTC 3 cut(s) 568, 589, 610
Ppu21I YACGTR 1 cut(s) 2060
PpuMI RGGWCCY 5 cut(s) 70, 884, 1421, 1814, 1925
Psp5II RGGWCCY 5 cut(s) 70, 884, 1421, 1814, 1925
Psp6I CCWGG 3 cut(s) 1510, 1786, 1897
PspEI GGTNACC 1 cut(s) 940
PspGI CCWGG 3 cut(s) 1510, 1786, 1897
PspN4I GGNNCC 7 cut(s) 72, 444, 886, 1000, 1422, 1816, 1927
PspPPI RGGWCCY 5 cut(s) 70, 884, 1421, 1814, 1925
PspXI VCTCGAGB 1 cut(s) 2212
PstI CTGCAG 1 cut(s) 1534
PstNI CAGNNNCTG 2 cut(s) 1778, 1951
PsuI RGATCY 2 cut(s) 874, 1076
RsaI GTAC 1 cut(s) 1000
RsaNI GTAC 1 cut(s) 999
SaqAI TTAA 4 cut(s) 65, 192, 351, 1040
SatI GCNGC 2 cut(s) 1478, 2207
Sau3AI GATC 6 cut(s) 88, 865, 874, 1076, 1188, 1213
SchI GAGTC 3 cut(s) 569, 590, 611
ScrFI CCNGG 4 cut(s) 1419, 1512, 1788, 1899
SduI GDGCHC 2 cut(s) 12, 1519
SexAI ACCWGGT 1 cut(s) 1786
SfaNI GCATC 9 cut(s) 190, 724, 817, 954, 1246, 1268, 1326, 1456, 2147
SfcI CTRYAG 1 cut(s) 1530
Sfr274I CTCGAG 1 cut(s) 2212
SfuI TTCGAA 1 cut(s) 489
SinI GGWCC 8 cut(s) 70, 822, 884, 894, 1109, 1421, 1814, 1925
SlaI CTCGAG 1 cut(s) 2212
SmlI CTYRAG 2 cut(s) 908, 2212
SmoI CTYRAG 2 cut(s) 908, 2212
SpeI ACTAGT 1 cut(s) 554
SsiI CCGC 3 cut(s) 74, 332, 1178
SspI AATATT 1 cut(s) 157
SspMI CTAG 4 cut(s) 555, 636, 1164, 1551
StyD4I CCNGG 4 cut(s) 1417, 1510, 1786, 1897
StyI CCWWGG 1 cut(s) 1424
TaaI ACNGT 5 cut(s) 306, 418, 1626, 1710, 1797
TaiI ACGT 1 cut(s) 2062
TaqI TCGA 9 cut(s) 30, 39, 234, 326, 482, 489, 768, 1799, 2213
TaqII GACCGA 1 cut(s) 839
TfiI GAWTC 2 cut(s) 113, 131
Tru1I TTAA 4 cut(s) 65, 192, 351, 1040
Tru9I TTAA 4 cut(s) 65, 192, 351, 1040
TscAI CASTG 3 cut(s) 423, 939, 1596
TseFI GTSAC 3 cut(s) 418, 940, 1364
TseI GCWGC 2 cut(s) 1477, 2206
Tsp45I GTSAC 3 cut(s) 418, 940, 1364
TspDTI ATGAA 9 cut(s) 663, 689, 795, 810, 816, 822, 1113, 1290, 1490
TspGWI ACGGA 3 cut(s) 1071, 1478, 1716
TspRI CASTG 3 cut(s) 423, 939, 1596
VneI GTGCAC 1 cut(s) 1515
VpaK11BI GGWCC 8 cut(s) 70, 822, 884, 894, 1109, 1421, 1814, 1925
XapI RAATTY 4 cut(s) 61, 313, 783, 1298
XhoI CTCGAG 1 cut(s) 2212
XspI CTAG 4 cut(s) 555, 636, 1164, 1551
Zsp2I ATGCAT 1 cut(s) 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.