Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8200688.1

Orthogroup ID

OG0012463

Physical Location & Seq

Genomic Coordinates Forward (+)

169 .. 711

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8200688.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggtagggttcacccctgaagtagacctcgatcaagcttcaaagctcaagctttcaaaggacccacctgacgccgttgatcccagacccatcgacttgtcctttgtagattccttgttggattttgactccattgagacttggttcagggattttccaaacccagatatggccgaggccgggacgacgactgtggtgaaatccgagccaattgactctgagcctggttctgtggtgaaggtgaagtctgaggtaggtggtggaggccaaatcgttaatgggtccgaacccattgattgtgggcttgctggtgtggtgaacgtgaagtctgaagtttcagaaaatttgaggagttctattgaggaagagttggggaaggttagtttggttggagggaatgaagagagtttggttcttgatagtgggaatggagtgggtgaggatttggagaccaaaatcgaaggtgtggagggcaaaatggagagtgggattgagagcgaaagttcggagtcggagagtgagagtgagagttcatcagcagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gar1

Protein Analysis

181

Amino Acids

18.95

Weight (kDa)

4.05

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03530
fragaria_vesca	FvH4_6g44910
malus_domestica	MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica	Prupe.3G233000_v2.0.a1
pyrus_communis	pycom09g01750 pycom17g08010
rosa_chinensis	RchiOBHm_Chr2g0162091
rosa_laevigata	RLG00000021322
rosa_multiflora	Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii	Rroxscaffold_2G00088310
rosa_rugosa	Rorug02G0494600
rosa_samantha	Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana	Rw2G046450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	2 cut(s)	39, 351
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	169, 180
AgsI	TTSAA	2 cut(s)	42, 57
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	3 cut(s)	38, 46, 52
AluI	AGCT	3 cut(s)	38, 46, 52
Alw26I	GTCTC	2 cut(s)	131, 443
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	3 cut(s)	171, 177, 265
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	343
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspS9I	GGNCC	2 cut(s)	61, 282
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	6 cut(s)	4, 208, 247, 253, 328, 449
AvaII	GGWCC	2 cut(s)	61, 282
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	131, 443
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	181, 225
Bme18I	GGWCC	2 cut(s)	61, 282
BmgT120I	GGNCC	2 cut(s)	61, 282
BmiI	GGNNCC	2 cut(s)	63, 283
BmrFI	CCNGG	2 cut(s)	181, 225
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	181
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 180
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	169, 180
BseMII	CTCAG	2 cut(s)	210, 240
BseRI	GAGGAG	1 cut(s)	364
BshFI	GGCC	3 cut(s)	173, 179, 267
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	169, 180
BsmAI	GTCTC	2 cut(s)	131, 443
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	3 cut(s)	173, 179, 267
Bso31I	GGTCTC	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	31, 79
BspANI	GGCC	3 cut(s)	173, 179, 267
BspCNI	CTCAG	2 cut(s)	211, 241
BspLI	GGNNCC	2 cut(s)	63, 283
BspPI	GGATC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	31, 79
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	360, 396
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	219, 249
BstKTI	GATC	2 cut(s)	34, 82
BstMAI	GTCTC	2 cut(s)	131, 443
BstMBI	GATC	2 cut(s)	31, 79
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	179, 223
BsuRI	GGCC	3 cut(s)	173, 179, 267
Cac8I	GCNNGC	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	61, 282
CseI	GACGC	1 cut(s)	80
CviJI	RGCY	9 cut(s)	38, 46, 52, 173, 179, 208, 223, 267, 304
CviKI_1	RGCY	9 cut(s)	38, 46, 52, 173, 179, 208, 223, 267, 304
DdeI	CTNAG	2 cut(s)	219, 249
DpnI	GATC	2 cut(s)	33, 81
DpnII	GATC	2 cut(s)	31, 79
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	360, 396
EarI	CTCTTC	2 cut(s)	360, 396
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	2 cut(s)	61, 282
Eco57I	CTGAAG	2 cut(s)	39, 351
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	223
FaiI	YATR	1 cut(s)	170
FaqI	GGGAC	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	540
Fsp4HI	GCNGC	1 cut(s)	540
GluI	GCNGC	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	173, 179, 267
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	72
HindIII	AAGCTT	2 cut(s)	36, 50
HinfI	GANTC	4 cut(s)	110, 128, 215, 509
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	6 cut(s)	4, 208, 247, 253, 328, 449
Hpy166II	GTNNAC	3 cut(s)	12, 25, 319
Hpy188I	TCNGA	8 cut(s)	205, 220, 250, 286, 331, 340, 508, 514
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	3 cut(s)	12, 25, 319
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	232, 370, 455
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	321
HpyF3I	CTNAG	2 cut(s)	219, 249
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	31, 79
LpnPI	CCDG	9 cut(s)	30, 81, 97, 133, 177, 193, 210, 237, 294
MaeII	ACGT	1 cut(s)	321
MalI	GATC	2 cut(s)	33, 81
MboI	GATC	2 cut(s)	31, 79
MboII	GAAGA	2 cut(s)	377, 413
MfeI	CAATTG	1 cut(s)	210
MluCI	AATT	2 cut(s)	210, 343
MlyI	GAGTC	3 cut(s)	122, 209, 518
MmeI	TCCRAC	3 cut(s)	99, 370, 492
MnlI	CCTC	9 cut(s)	38, 169, 244, 257, 342, 355, 386, 433, 463
MseI	TTAA	1 cut(s)	276
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	181, 225
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	225
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	31, 79
NlaIV	GGNNCC	2 cut(s)	63, 283
NmeAIII	GCCGAG	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	3 cut(s)	122, 209, 517
PpsI	GAGTC	3 cut(s)	122, 209, 517
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	63, 283
PspPI	GGNCC	2 cut(s)	61, 282
PspPPI	RGGWCCY	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	2 cut(s)	31, 79
Sau96I	GGNCC	2 cut(s)	61, 282
SchI	GAGTC	3 cut(s)	122, 209, 518
ScrFI	CCNGG	2 cut(s)	181, 225
SinI	GGWCC	2 cut(s)	61, 282
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	210, 343
StyD4I	CCNGG	2 cut(s)	179, 223
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	3 cut(s)	30, 93, 459
TasI	AATT	2 cut(s)	210, 343
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseI	GCWGC	1 cut(s)	539
TspDTI	ATGAA	2 cut(s)	414, 522
VpaK11BI	GGWCC	2 cut(s)	61, 282
XapI	RAATTY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.