RchiOBHm_Chr2g0162091

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012463
Physical Location & Seq
Reverse (-)
77868694 .. 77872042
3349 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53040

Sequence Viewer

Length: 2016 bp
ATGGTAGGGTTCACCCCTGAAGTAGACCTCGATCAAGCTTCAAAGCTCAAGCTTTCAAAGGACCCACCTGACGCCGTTGATCCCAGACCCATCGACTTGTCCTTTGTAGATTCCTTGTTGGATTTTGACTCCATTGAGACTTGGTTCAGGGATTTTCCAAACCCAGATATGGCCGAGGCCGGGACGACGACTGTGGTGAAATCCGAGCCAATTGACTGTGAGCCTGGTTCTGTGGTGAAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCCGAACCCATTGATTGTGGGCTTGGTGGTGTGGTGAACGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAGGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAGAGTTTGGTTCTTGATAGTGGGAATGGAGTGGGTGAGGATTTGGAGACCAAAATCGAAGGTGTGGAGGGTGGGATTGAGAGCGAAAGTTCGGAGTCGGAGAGTGAGAGTTCATCAGCAGCATCATCTTCTTCGAGTAGTAGCTCTAGTGATGAGGATGAGGAGGAGAGAGAGAGTGATGATATGGATGAGGAGAAGGATGGAGAAGGGAATGTGAAGGCGGAGGTGGAGAAGGAGGGCAATGAGGAGGCTTGTGAACTTGAAGAAGGTGAGATAAGTGGTGCAGAGCAGATAGGTGATGGAAGTGGTGATGAGGATGATGAGGAGGGCGCCGAGGTTGCGTGGAGTGATGTTGATATTTTCGATGAGGGAGACGAGGAAGAGGAAGCTATAAAAGGTCCCATTCGTTCCAAAAATGAGCTCGAGGAACTTCCACCAGTTCCTTCAGTTAATGTGACCTTGGAACCACATCATCAAATGCTTCCTGTCGGAGTTGTTTTATCGGTTGTTGGTACCAAAGTCATTGTAGAAGGGGTTGAGAAGCACAACCCTCTGAACGAGGGTTCTATTCTGTGGATAACTGAAAGCAGGTCTCCGTTGGGACTGGTAGATGAAATTTTTGGACCTGTCATAAACCCTTACTATATGGTGAGATACAATACAGAAAGTGAAATCCCTGCCGGTATAGAAGTTGGAACACCAATCTCTTTTGTTCAGGAGTTTGCAGATCATGTGCTCAATAACAAAGATCTTTACAGAAAGGGTTATGATGCATCTGGTGCGAATGATGAAGAGGTATCAGATGAAGCAGAATTTTCAGATGATGAAAAAGAAGCTGAATACAAGAGACTGCAAAAAATGACAAAGAGGGGAATGAATGACCAGAATGCCGGCAGTAAGAAAAACAACAGAAAAAGAGGTAAAAATAAGATGGGTCCCTGGAAAAATGGTCAATCTTCACCCCAGCAAACACCTCCCAATCAACACCACGAGCATCCCTCTTCAGCTGCACCTGCTCGTCGTTATGGTCCATCTTCTTCTGCAGTCTCACAAGGTTTGGTTAGTGGGCGTGGATCAGTTCGACCATTTCCAGGTGCTACACAGGCCACTGGTATGAACGCAAATGGGGTTTGGTCAAATGGAATGCCGTGTCAGCCACAGCAAACACCCTTCCCTAATGCATTTCCAAATAATAATATGCCATTTTTTCCACAGTACCCTCATCAGATGTCTATGCCGGGCGGAATTCCATTCCATCAGCAGACAAATGTATTTTCTGGACCCATGGGTTCACAAGGGATGATGGGTCAACTTGGCTTCCACCAACCAGCATTTGGAGTAGGTTTCCAGGGACAACCAACACCAGGTCAACAGTTGAATTCCTTTCCAGGACCCATGAATGCATTTGGGATGAGTCAACAGGGTCAACATGGGTTCAACCAAAATGCATTTGGGATGGGTCAACAGGGATTCAATCCAAATGTTTTTGGGGTAGGTCAACAGGGGTCAGCATGGCTTCAACCAAAATACATTCGGGATAGGCTCACAGGGTCAACCTACAAACCTAAGCTTAGAACAGAATATGCCACAACCTGGGAACCCGGTTGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

671

Amino Acids

72.38

Weight (kDa)

4.41

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 295 - 376 5.4e-17 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1423
Acc36I ACCTGC 2 cut(s) 981, 1423
Acc65I GGTACC 1 cut(s) 914
AccB1I GGYRCC 2 cut(s) 731, 914
AccB7I CCANNNNNTGG 2 cut(s) 1736, 1995
AccI GTMKAC 1 cut(s) 24
AciI CCGC 2 cut(s) 623, 1644
AclWI GGATC 2 cut(s) 74, 1483
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 5 cut(s) 343, 1017, 1214, 1647, 1780
AcuI CTGAAG 4 cut(s) 39, 351, 831, 1389
AcyI GRCGYC 2 cut(s) 72, 732
AfaI GTAC 2 cut(s) 916, 1619
AfiI CCNNNNNNNGG 7 cut(s) 169, 180, 1493, 1736, 1766, 1995, 2010
AgsI TTSAA 7 cut(s) 42, 57, 665, 1780, 1840, 1876, 1922
AjnI CCWGG 7 cut(s) 223, 1340, 1492, 1749, 1765, 1789, 1994
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 9 cut(s) 38, 46, 52, 546, 791, 823, 1238, 1409, 1972
AluI AGCT 9 cut(s) 38, 46, 52, 546, 791, 823, 1238, 1409, 1972
Alw21I GWGCWC 2 cut(s) 825, 1140
Alw26I GTCTC 6 cut(s) 131, 443, 768, 999, 1243, 1453
AlwI GGATC 2 cut(s) 74, 1483
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 4 cut(s) 171, 177, 265, 1506
ApeKI GCWGC 2 cut(s) 521, 1409
ApoI RAATTY 5 cut(s) 343, 1017, 1214, 1647, 1780
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp718I GGTACC 1 cut(s) 914
AspLEI GCGC 1 cut(s) 734
AspS9I GGNCC 8 cut(s) 61, 282, 800, 1025, 1337, 1430, 1682, 1793
AsuC2I CCSGG 3 cut(s) 181, 1641, 2004
AvaI CYCGRG 1 cut(s) 824
AvaII GGWCC 8 cut(s) 61, 282, 800, 1025, 1337, 1430, 1682, 1793
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BanI GGYRCC 2 cut(s) 731, 914
BanII GRGCYC 1 cut(s) 825
BauI CACGAG 1 cut(s) 1391
Bbv12I GWGCWC 2 cut(s) 825, 1140
BbvI GCAGC 2 cut(s) 533, 1396
BccI CCATC 8 cut(s) 98, 596, 695, 1327, 1441, 1665, 1699, 1852
BceAI ACGGC 2 cut(s) 59, 1534
BciT130I CCWGG 7 cut(s) 225, 1342, 1494, 1751, 1767, 1791, 1996
BcnI CCSGG 3 cut(s) 181, 1641, 2004
BcoDI GTCTC 6 cut(s) 131, 443, 768, 999, 1243, 1453
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 1 cut(s) 1443
BfoI RGCGCY 1 cut(s) 735
BfuAI ACCTGC 2 cut(s) 981, 1423
BglII AGATCT 1 cut(s) 1150
BisI GCNGC 2 cut(s) 522, 1410
BlsI GCNGC 2 cut(s) 523, 1411
Bme18I GGWCC 8 cut(s) 61, 282, 800, 1025, 1337, 1430, 1682, 1793
BmeT110I CYCGRG 1 cut(s) 824
BmgT120I GGNCC 8 cut(s) 61, 282, 800, 1025, 1337, 1430, 1682, 1793
BmsI GCATC 4 cut(s) 533, 1162, 1184, 1405
BplI GAGNNNNNCTC 2 cut(s) 1385, 1417
Bpu10I CCTNAGC 1 cut(s) 1968
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 3 cut(s) 181, 1641, 2004
BsaHI GRCGYC 2 cut(s) 72, 732
BsaI GGTCTC 2 cut(s) 443, 999
BsaJI CCNNGG 7 cut(s) 174, 735, 861, 1340, 1686, 1750, 1995
Bsc4I CCNNNNNNNGG 7 cut(s) 169, 180, 1493, 1736, 1766, 1995, 2010
Bse118I RCCGGY 2 cut(s) 1082, 1292
Bse1I ACTGG 3 cut(s) 839, 1011, 1516
Bse3DI GCAATG 1 cut(s) 649
BseBI CCWGG 7 cut(s) 225, 1342, 1494, 1751, 1767, 1791, 1996
BseDI CCNNGG 7 cut(s) 174, 735, 861, 1340, 1686, 1750, 1995
BseGI GGATG 8 cut(s) 565, 595, 607, 724, 1396, 1707, 1818, 1863
BseLI CCNNNNNNNGG 7 cut(s) 169, 180, 1493, 1736, 1766, 1995, 2010
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 3 cut(s) 839, 1011, 1516
BseRI GAGGAG 6 cut(s) 364, 578, 581, 608, 662, 740
BseXI GCAGC 2 cut(s) 533, 1396
BseYI CCCAGC 1 cut(s) 1365
BsgI GTGCAG 2 cut(s) 705, 1395
BshFI GGCC 4 cut(s) 173, 179, 267, 1508
BshNI GGYRCC 2 cut(s) 731, 914
BsiHKAI GWGCWC 2 cut(s) 825, 1140
BsiHKCI CYCGRG 1 cut(s) 824
BsiSI CCGG 5 cut(s) 180, 1083, 1293, 1640, 2004
BslFI GGGAC 5 cut(s) 196, 786, 1017, 1323, 1767
BslI CCNNNNNNNGG 7 cut(s) 169, 180, 1493, 1736, 1766, 1995, 2010
BsmAI GTCTC 6 cut(s) 131, 443, 768, 999, 1243, 1453
BsmBI CGTCTC 1 cut(s) 768
BsmFI GGGAC 5 cut(s) 196, 786, 1017, 1323, 1767
BsmI GAATGC 3 cut(s) 1294, 1551, 1807
BsnI GGCC 4 cut(s) 173, 179, 267, 1508
Bso31I GGTCTC 2 cut(s) 443, 999
BsoBI CYCGRG 1 cut(s) 824
Bsp1286I GDGCHC 2 cut(s) 825, 1140
Bsp143I GATC 5 cut(s) 31, 79, 1129, 1150, 1475
Bsp19I CCATGG 1 cut(s) 1686
BspACI CCGC 2 cut(s) 623, 1644
BspANI GGCC 4 cut(s) 173, 179, 267, 1508
BspCNI CTCAG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 1447
BspMI ACCTGC 2 cut(s) 981, 1423
BspPI GGATC 2 cut(s) 74, 1483
BspT107I GGYRCC 2 cut(s) 731, 914
BspTNI GGTCTC 2 cut(s) 443, 999
BsrDI GCAATG 1 cut(s) 649
BsrFI RCCGGY 2 cut(s) 1082, 1292
BsrI ACTGG 3 cut(s) 839, 1011, 1516
BssAI RCCGGY 2 cut(s) 1082, 1292
BssECI CCNNGG 7 cut(s) 174, 735, 861, 1340, 1686, 1750, 1995
BssMI GATC 5 cut(s) 31, 79, 1129, 1150, 1475
BssNI GRCGYC 2 cut(s) 72, 732
BssSI CACGAG 1 cut(s) 1391
BssT1I CCWWGG 2 cut(s) 861, 1686
Bst2BI CACGAG 1 cut(s) 1391
Bst2UI CCWGG 7 cut(s) 225, 1342, 1494, 1751, 1767, 1791, 1996
Bst4CI ACNGT 4 cut(s) 193, 218, 1617, 1776
Bst6I CTCTTC 5 cut(s) 360, 396, 777, 1188, 1408
BstACI GRCGYC 2 cut(s) 72, 732
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstC8I GCNNGC 1 cut(s) 1294
BstDEI CTNAG 3 cut(s) 249, 1968, 1973
BstDSI CCRYGG 1 cut(s) 1686
BstF5I GGATG 8 cut(s) 565, 595, 607, 724, 1396, 1707, 1818, 1863
BstH2I RGCGCY 1 cut(s) 735
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 5 cut(s) 34, 82, 1132, 1153, 1478
BstMAI GTCTC 6 cut(s) 131, 443, 768, 999, 1243, 1453
BstMBI GATC 5 cut(s) 31, 79, 1129, 1150, 1475
BstMWI GCNNNNNNNGC 5 cut(s) 740, 1181, 1415, 1505, 1555
BstNI CCWGG 7 cut(s) 225, 1342, 1494, 1751, 1767, 1791, 1996
BstSFI CTRYAG 1 cut(s) 1443
BstV1I GCAGC 2 cut(s) 533, 1396
BstX2I RGATCY 1 cut(s) 1150
BstYI RGATCY 1 cut(s) 1150
BsuRI GGCC 4 cut(s) 173, 179, 267, 1508
BtgI CCRYGG 1 cut(s) 1686
BtsCI GGATG 8 cut(s) 565, 595, 607, 724, 1396, 1707, 1818, 1863
BtsIMutI CAGTG 1 cut(s) 1509
BveI ACCTGC 2 cut(s) 981, 1423
Cac8I GCNNGC 1 cut(s) 1294
CfoI GCGC 1 cut(s) 734
Cfr10I RCCGGY 2 cut(s) 1082, 1292
Cfr13I GGNCC 8 cut(s) 61, 282, 800, 1025, 1337, 1430, 1682, 1793
CseI GACGC 1 cut(s) 80
CsiI ACCWGGT 1 cut(s) 1765
Csp6I GTAC 2 cut(s) 915, 1618
CviAII CATG 5 cut(s) 1133, 1687, 1798, 1832, 1914
CviQI GTAC 2 cut(s) 915, 1618
DdeI CTNAG 3 cut(s) 249, 1968, 1973
DinI GGCGCC 1 cut(s) 733
DpnI GATC 5 cut(s) 33, 81, 1131, 1152, 1477
DpnII GATC 5 cut(s) 31, 79, 1129, 1150, 1475
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 5 cut(s) 360, 396, 777, 1188, 1408
EarI CTCTTC 5 cut(s) 360, 396, 777, 1188, 1408
EciI GGCGGA 2 cut(s) 638, 1659
Ecl136II GAGCTC 1 cut(s) 823
Eco130I CCWWGG 2 cut(s) 861, 1686
Eco24I GRGCYC 1 cut(s) 825
Eco31I GGTCTC 2 cut(s) 443, 999
Eco47I GGWCC 8 cut(s) 61, 282, 800, 1025, 1337, 1430, 1682, 1793
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 4 cut(s) 39, 351, 831, 1389
Eco88I CYCGRG 1 cut(s) 824
EcoICRI GAGCTC 1 cut(s) 823
EcoO109I RGGNCCY 4 cut(s) 61, 800, 1337, 1793
EcoRI GAATTC 2 cut(s) 1647, 1780
EcoRII CCWGG 7 cut(s) 223, 1340, 1492, 1749, 1765, 1789, 1994
EcoT14I CCWWGG 2 cut(s) 861, 1686
EcoT22I ATGCAT 4 cut(s) 1177, 1585, 1807, 1852
EcoT38I GRGCYC 1 cut(s) 825
EgeI GGCGCC 1 cut(s) 733
EheI GGCGCC 1 cut(s) 733
ErhI CCWWGG 2 cut(s) 861, 1686
Esp3I CGTCTC 1 cut(s) 768
FaeI CATG 5 cut(s) 1136, 1690, 1801, 1835, 1917
FaqI GGGAC 5 cut(s) 196, 786, 1017, 1323, 1767
FatI CATG 5 cut(s) 1132, 1686, 1797, 1831, 1913
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 522, 1410
FokI GGATG 8 cut(s) 572, 602, 614, 731, 1383, 1714, 1825, 1870
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 2 cut(s) 522, 1410
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 733
GluI GCNGC 2 cut(s) 522, 1410
GsaI CCCAGC 1 cut(s) 1369
HaeII RGCGCY 1 cut(s) 735
HaeIII GGCC 4 cut(s) 173, 179, 267, 1508
HapII CCGG 5 cut(s) 180, 1083, 1293, 1640, 2004
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 734
Hin1I GRCGYC 2 cut(s) 72, 732
Hin1II CATG 5 cut(s) 1136, 1690, 1801, 1835, 1917
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HincII GTYRAC 7 cut(s) 1712, 1772, 1820, 1829, 1865, 1901, 1956
HindII GTYRAC 7 cut(s) 1712, 1772, 1820, 1829, 1865, 1901, 1956
HindIII AAGCTT 3 cut(s) 36, 50, 1970
HinfI GANTC 5 cut(s) 110, 128, 497, 1816, 1872
HpaII CCGG 5 cut(s) 180, 1083, 1293, 1640, 2004
Hpy188III TCNNGA 4 cut(s) 416, 1118, 1680, 1937
Hpy99I CGWCG 2 cut(s) 190, 1425
HpyCH4III ACNGT 4 cut(s) 193, 218, 1617, 1776
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 9 cut(s) 686, 1127, 1175, 1255, 1412, 1445, 1583, 1805, 1850
HpyF10VI GCNNNNNNNGC 5 cut(s) 740, 1181, 1415, 1505, 1555
HpyF3I CTNAG 3 cut(s) 249, 1968, 1973
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 2 cut(s) 72, 732
Hsp92II CATG 5 cut(s) 1136, 1690, 1801, 1835, 1917
HspAI GCGC 1 cut(s) 732
KasI GGCGCC 1 cut(s) 731
KflI GGGWCCC 1 cut(s) 1337
KpnI GGTACC 1 cut(s) 918
KroI GCCGGC 1 cut(s) 1292
KroNI GCCGGC 1 cut(s) 1294
Kzo9I GATC 5 cut(s) 31, 79, 1129, 1150, 1475
Lsp1109I GCAGC 2 cut(s) 533, 1396
LweI GCATC 4 cut(s) 533, 1162, 1184, 1405
MabI ACCWGGT 1 cut(s) 1765
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 856
MalI GATC 5 cut(s) 33, 81, 1131, 1152, 1477
MboI GATC 5 cut(s) 31, 79, 1129, 1150, 1475
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 1150
MhlI GDGCHC 2 cut(s) 825, 1140
MluCI AATT 6 cut(s) 210, 343, 1017, 1214, 1647, 1780
Mly113I GGCGCC 1 cut(s) 732
MlyI GAGTC 3 cut(s) 122, 506, 1825
MmeI TCCRAC 5 cut(s) 99, 370, 480, 871, 1075
Mph1103I ATGCAT 4 cut(s) 1177, 1585, 1807, 1852
MroNI GCCGGC 1 cut(s) 1292
MseI TTAA 2 cut(s) 276, 852
MslI CAYNNNNRTG 1 cut(s) 1514
MspA1I CMGCKG 1 cut(s) 1409
MspI CCGG 5 cut(s) 180, 1083, 1293, 1640, 2004
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 3 cut(s) 1294, 1551, 1807
MvaI CCWGG 7 cut(s) 225, 1342, 1494, 1751, 1767, 1791, 1996
MwoI GCNNNNNNNGC 5 cut(s) 740, 1181, 1415, 1505, 1555
NaeI GCCGGC 1 cut(s) 1294
NarI GGCGCC 1 cut(s) 732
NciI CCSGG 3 cut(s) 181, 1641, 2004
NcoI CCATGG 1 cut(s) 1686
NdeII GATC 5 cut(s) 31, 79, 1129, 1150, 1475
NgoMIV GCCGGC 1 cut(s) 1292
NlaIII CATG 5 cut(s) 1136, 1690, 1801, 1835, 1917
NmeAIII GCCGAG 2 cut(s) 199, 760
NmuCI GTSAC 1 cut(s) 856
NsiI ATGCAT 4 cut(s) 1177, 1585, 1807, 1852
PaeR7I CTCGAG 1 cut(s) 824
PaqCI CACCTGC 1 cut(s) 1423
PctI GAATGC 3 cut(s) 1294, 1551, 1807
PdiI GCCGGC 1 cut(s) 1294
PfeI GAWTC 2 cut(s) 110, 1872
PflMI CCANNNNNTGG 2 cut(s) 1736, 1995
PfoI TCCNGGA 1 cut(s) 1789
PkrI GCNGC 2 cut(s) 523, 1411
PleI GAGTC 3 cut(s) 122, 505, 1824
PluTI GGCGCC 1 cut(s) 735
PpsI GAGTC 3 cut(s) 122, 505, 1824
PpuMI RGGWCCY 4 cut(s) 61, 800, 1337, 1793
Psp124BI GAGCTC 1 cut(s) 825
Psp5II RGGWCCY 4 cut(s) 61, 800, 1337, 1793
Psp6I CCWGG 7 cut(s) 223, 1340, 1492, 1749, 1765, 1789, 1994
PspFI CCCAGC 1 cut(s) 1365
PspGI CCWGG 7 cut(s) 223, 1340, 1492, 1749, 1765, 1789, 1994
PspPI GGNCC 8 cut(s) 61, 282, 800, 1025, 1337, 1430, 1682, 1793
PspPPI RGGWCCY 4 cut(s) 61, 800, 1337, 1793
PspXI VCTCGAGB 1 cut(s) 824
PstI CTGCAG 1 cut(s) 1447
PsuI RGATCY 1 cut(s) 1150
PvuII CAGCTG 1 cut(s) 1409
RsaI GTAC 2 cut(s) 916, 1619
RsaNI GTAC 2 cut(s) 915, 1618
RseI CAYNNNNRTG 1 cut(s) 1514
SacI GAGCTC 1 cut(s) 825
SaqAI TTAA 2 cut(s) 276, 852
SatI GCNGC 2 cut(s) 522, 1410
Sau3AI GATC 5 cut(s) 31, 79, 1129, 1150, 1475
Sau96I GGNCC 8 cut(s) 61, 282, 800, 1025, 1337, 1430, 1682, 1793
SchI GAGTC 3 cut(s) 122, 506, 1825
SduI GDGCHC 2 cut(s) 825, 1140
SexAI ACCWGGT 1 cut(s) 1765
SfaNI GCATC 4 cut(s) 533, 1162, 1184, 1405
SfcI CTRYAG 1 cut(s) 1443
SfoI GGCGCC 1 cut(s) 733
Sfr274I CTCGAG 1 cut(s) 824
SinI GGWCC 8 cut(s) 61, 282, 800, 1025, 1337, 1430, 1682, 1793
SlaI CTCGAG 1 cut(s) 824
SmiMI CAYNNNNRTG 1 cut(s) 1514
SmlI CTYRAG 2 cut(s) 47, 824
SmoI CTYRAG 2 cut(s) 47, 824
Sse9I AATT 6 cut(s) 210, 343, 1017, 1214, 1647, 1780
SsiI CCGC 2 cut(s) 623, 1644
SspDI GGCGCC 1 cut(s) 731
SspMI CTAG 1 cut(s) 549
SstI GAGCTC 1 cut(s) 825
StyI CCWWGG 2 cut(s) 861, 1686
TaaI ACNGT 4 cut(s) 193, 218, 1617, 1776
TaiI ACGT 1 cut(s) 324
TaqI TCGA 7 cut(s) 30, 93, 459, 536, 765, 825, 1483
TasI AATT 6 cut(s) 210, 343, 1017, 1214, 1647, 1780
TfiI GAWTC 2 cut(s) 110, 1872
Tru1I TTAA 2 cut(s) 276, 852
Tru9I TTAA 2 cut(s) 276, 852
TscAI CASTG 1 cut(s) 1516
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 2 cut(s) 521, 1409
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 9 cut(s) 414, 504, 1029, 1206, 1221, 1242, 1292, 1532, 1814
TspGWI ACGGA 1 cut(s) 987
TspRI CASTG 1 cut(s) 1516
Van91I CCANNNNNTGG 2 cut(s) 1736, 1995
VpaK11BI GGWCC 8 cut(s) 61, 282, 800, 1025, 1337, 1430, 1682, 1793
XapI RAATTY 5 cut(s) 343, 1017, 1214, 1647, 1780
XcmI CCANNNNNNNNNTGG 3 cut(s) 275, 1733, 1850
XhoI CTCGAG 1 cut(s) 824
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 549
Zsp2I ATGCAT 4 cut(s) 1177, 1585, 1807, 1852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.