FvH4_6g44910

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012463
Physical Location & Seq
Reverse (-)
34528072 .. 34531302
3231 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44910.t1

Sequence Viewer

Length: 2136 bp
ATGGTAGGTCTCTCCTCAGAACCCAACCTCGATCAAGCTTCAAAGCTCAAGCTTTCAAGGGACCCACCAGACGCCGTCGATCCCAGACCCGTCGCCGACCTGTCGTTTGTTGATTCGTTGCTGGATTTCGAGTCCATTGATAGTTGGTTTAGGGATTTACCGAACCCGGGTATGGATTGTGAGGCGGGTAGTGTGGTGGAGGTGAAGAATGACGTTATTGAGGTTGGTGGTGGAGGCCCAGTTGTGAATGGATCGGACCCATTTGGTTGTGGGCTTGGTTCGGCGGTGGCGGTGAAGCCTGAAGTTGCAGAGGTTGCAGAGAAGTTGAGTTGTTGTATTGAGGAGGAGTTGGGGAAGGTTAGTTTAGTTGGAGGGGGTGAAGACAGTTTAGTTCTTGGAGCAGTGAGTGAGAAGTTGGAGCCGAAAATCGAAGGTGTGGAGAGTAAAATGAAGAGTGAAAGTTCGGAATCGGAGAGTGAGAGTGAGAGTGAGAGTTCATCAGCAGCATCGTCTTCGAGTAGTAGTAGCTCTAGTGAGGAGGAGGAGATGGATGTGGAGAAGGATGGAACAGGGAATGTGAAGGTGGAGGCGGAGACGAAGGAGAAGGAGTGCGAAGAGGAGGCTTGTGAACTTGAAGAAGGGGAGATAAGTGGTGGAGAGGAGAAGGGTTATGGAAGTGGGGATGATGGTGATGAGGAGGGCGCTGAGGTTGCTTGGAGTGATGATGATATTTTCGATGAGGGGGATGAGGAAGAGGACGCTATAAAAGGACCCATTAGGTCCAAAAATGAGCTCGAGGAACTTCCACCAGTTCCACCAGTTAATGCAACCTTGGAACCACATCATCAAATGCTGCCTGTGGGAGTTGTTTTATCGGTTGTTGGTACCAAAGTCATTGTAGAAGGAGTTGAGAAGCACAACCCTCTGAACGAGGGTTCTATTCTGTGGATAACTGAGAGCAGATCTCCGTTGGGACTGGTAGATGAAATTTTTGGACCTGTTATAAACCCTTACTATATGGTGAGATACAATACAGAAAGTGAAATCCCTGCCGGTATACAAGTTGGAACACCGATCTCTTTTGTTCAGGAGTTTGCAGATCATGTGCTCAATAACAAAGATCTTTACAGAAAGGGTTATGATGCATCGGGTGCAAATGATGAAGAGATATCAGATGAAGCAGAATTTTCAGATGATGAGAAAGAGGCTGAATACAGGAGACAGCAAAAAATGGCAAAGAGGGGAATGAATGACCAGAATGCCGGCAGTAAGAAAAACAACAGAAAAAAAGGTAAAAATAGGATGGGGTCCTGGAAGAATGATCAATCTTCACCCCAGCAAACACCTCCCGATCAACACCACGAGCAATCTTCAGCTGCACCTGCTCGTCGTTATGGTCCATCTTCTTCTGCAGTCTCAGAAAGTTTGGTTAGTGGGCGTGGATCAGGTCCATTTCCAGGTGCTACACAGGCTGGTGGTATGCATGCAAATGGAGTTTGGACAAATGGAATGCCGTGTCAGCTACAACAAACACCTTTCCCCAATGCATTTCCAAATAATAATATGCCATTTTTTCCACAGTACCCACATCAGATGTCTATGCCAGGCGGAATTCCATTCCATCAGCAGCCAAATGCGTTTTCAGGACCCATGGGTTCACAAGGGATGATGGGTCAACATGGCTTCCACCAACCAGGTTTTGGAATAGGTTTCCAGGGACAACATACACCAGGGCAACAGTTGAATTCCTTCCCAGGACCGATGCATGCATTTGGGATGGCTCAACAGGGTCAACTTGGCTTCAACCAAATTGCATTTGGGATGGGTCAAAATGGCTTCAACCCGAATGTTTTTGGGGTGGGGCCACCGGGTCAACATGGCTTCAACCCAAATGGATGTGCAATGGTTCAACAGGGACAGCATGGCTTCAACCAAAATACGTTCCCGAGTATCTCACAGGGTCAACCTACAAACCCAAATTTAGAACAGAATATGCCACAACCTGGGAACCCAGTTGCAGGTGATGTTGACGCTCCCCAACAATTTAGTCGAAGTACATCTGCTAATCGTGGAAGAAGGCCGTATCGTCGAGGGGGTCGTCAGTTTGCAAGGGGAAGAGGAAGGGGTGCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

712

Amino Acids

76.1

Weight (kDa)

4.6

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 285 - 366 6e-17 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1004
AarI CACCTGC 2 cut(s) 1390, 2009
Acc36I ACCTGC 2 cut(s) 1390, 2009
Acc65I GGTACC 1 cut(s) 884
AccB1I GGYRCC 2 cut(s) 884, 2126
AccB7I CCANNNNNTGG 2 cut(s) 1700, 2003
AccI GTMKAC 1 cut(s) 1057
AciI CCGC 5 cut(s) 185, 284, 290, 590, 1608
AclWI GGATC 3 cut(s) 74, 259, 1450
AcsI RAATTY 5 cut(s) 987, 1184, 1611, 1744, 1978
AcuI CTGAAG 2 cut(s) 321, 1356
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 886, 1583, 2056
AfiI CCNNNNNNNGG 6 cut(s) 167, 172, 1457, 1700, 2003, 2018
AgsI TTSAA 9 cut(s) 42, 57, 635, 1744, 1804, 1840, 1885, 1910, 1930
AjnI CCWGG 8 cut(s) 1310, 1456, 1603, 1693, 1713, 1729, 1753, 2002
AjuI GAANNNNNNNTTGG 2 cut(s) 1624, 1656
AluBI AGCT 8 cut(s) 38, 46, 52, 528, 793, 1376, 1522, 2133
AluI AGCT 8 cut(s) 38, 46, 52, 528, 793, 1376, 1522, 2133
Alw21I GWGCWC 2 cut(s) 795, 1110
Alw26I GTCTC 4 cut(s) 14, 587, 1213, 1420
AlwI GGATC 3 cut(s) 74, 259, 1450
Ama87I CYCGRG 3 cut(s) 166, 794, 1945
AoxI GGCC 3 cut(s) 235, 1862, 2078
ApeKI GCWGC 4 cut(s) 503, 853, 1376, 1627
ApoI RAATTY 5 cut(s) 987, 1184, 1611, 1744, 1978
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
Asp700I GAANNNNTTC 1 cut(s) 1748
Asp718I GGTACC 1 cut(s) 884
AspLEI GCGC 1 cut(s) 704
AsuC2I CCSGG 3 cut(s) 167, 168, 1869
AsuHPI GGTGA 7 cut(s) 214, 304, 389, 701, 1033, 1323, 2033
AvaI CYCGRG 3 cut(s) 166, 794, 1945
BaeI ACNNNNGTAYC 2 cut(s) 876, 909
BanI GGYRCC 2 cut(s) 884, 2126
BanII GRGCYC 1 cut(s) 795
BauI CACGAG 1 cut(s) 1361
BbsI GAAGAC 2 cut(s) 387, 504
Bbv12I GWGCWC 2 cut(s) 795, 1110
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 4 cut(s) 515, 840, 1363, 1639
BccI CCATC 9 cut(s) 541, 557, 680, 1297, 1408, 1629, 1663, 1771, 1816
BceAI ACGGC 3 cut(s) 59, 1498, 2065
BcgI CGANNNNNNTGC 2 cut(s) 495, 529
BciT130I CCWGG 8 cut(s) 1312, 1458, 1605, 1695, 1715, 1731, 1755, 2004
BclI TGATCA 1 cut(s) 1321
BcnI CCSGG 3 cut(s) 167, 168, 1869
BcoDI GTCTC 4 cut(s) 14, 587, 1213, 1420
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 1410
BfoI RGCGCY 1 cut(s) 705
BfuAI ACCTGC 2 cut(s) 1390, 2009
BglII AGATCT 2 cut(s) 962, 1120
BisI GCNGC 4 cut(s) 504, 854, 1377, 1628
BlsI GCNGC 4 cut(s) 505, 855, 1378, 1629
BmeT110I CYCGRG 3 cut(s) 166, 794, 1945
BmrI ACTGGG 2 cut(s) 233, 2006
BmsI GCATC 4 cut(s) 515, 1132, 1154, 1752
BmuI ACTGGG 2 cut(s) 233, 2006
BpiI GAAGAC 2 cut(s) 387, 504
BplI GAGNNNNNCTC 2 cut(s) 949, 981
Bpu10I CCTNAGC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 3 cut(s) 167, 168, 1869
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 7 cut(s) 166, 831, 1650, 1714, 1730, 1753, 2003
BsaXI ACNNNNNCTCC 4 cut(s) 225, 255, 593, 623
Bsc4I CCNNNNNNNGG 6 cut(s) 167, 172, 1457, 1700, 2003, 2018
Bse118I RCCGGY 2 cut(s) 1052, 1262
Bse1I ACTGG 5 cut(s) 239, 809, 818, 981, 2012
Bse3DI GCAATG 1 cut(s) 1908
BseBI CCWGG 8 cut(s) 1312, 1458, 1605, 1695, 1715, 1731, 1755, 2004
BseDI CCNNGG 7 cut(s) 166, 831, 1650, 1714, 1730, 1753, 2003
BseGI GGATG 9 cut(s) 556, 568, 688, 751, 1308, 1671, 1782, 1827, 1901
BseLI CCNNNNNNNGG 6 cut(s) 167, 172, 1457, 1700, 2003, 2018
BseMI GCAATG 1 cut(s) 1908
BseMII CTCAG 4 cut(s) 30, 696, 945, 1431
BseNI ACTGG 5 cut(s) 239, 809, 818, 981, 2012
BseRI GAGGAG 9 cut(s) 4, 356, 359, 551, 554, 557, 632, 674, 710
BseXI GCAGC 4 cut(s) 515, 840, 1363, 1639
BseYI CCCAGC 1 cut(s) 1335
BsgI GTGCAG 1 cut(s) 1362
BshFI GGCC 3 cut(s) 237, 1864, 2080
BshNI GGYRCC 2 cut(s) 884, 2126
BsiHKAI GWGCWC 2 cut(s) 795, 1110
BsiHKCI CYCGRG 3 cut(s) 166, 794, 1945
BsiSI CCGG 4 cut(s) 167, 1053, 1263, 1868
BslFI GGGAC 4 cut(s) 74, 987, 1731, 1929
BslI CCNNNNNNNGG 6 cut(s) 167, 172, 1457, 1700, 2003, 2018
BsmAI GTCTC 4 cut(s) 14, 587, 1213, 1420
BsmBI CGTCTC 1 cut(s) 587
BsmFI GGGAC 4 cut(s) 74, 987, 1731, 1929
BsmI GAATGC 2 cut(s) 1264, 1515
BsnI GGCC 3 cut(s) 237, 1864, 2080
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 3 cut(s) 166, 794, 1945
Bsp1286I GDGCHC 2 cut(s) 795, 1110
Bsp19I CCATGG 1 cut(s) 1650
BspACI CCGC 5 cut(s) 185, 284, 290, 590, 1608
BspANI GGCC 3 cut(s) 237, 1864, 2080
BspCNI CTCAG 4 cut(s) 29, 697, 946, 1430
BspMAI CTGCAG 1 cut(s) 1414
BspMI ACCTGC 2 cut(s) 1390, 2009
BspPI GGATC 3 cut(s) 74, 259, 1450
BspT107I GGYRCC 2 cut(s) 884, 2126
BspTNI GGTCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 1908
BsrFI RCCGGY 2 cut(s) 1052, 1262
BsrI ACTGG 5 cut(s) 239, 809, 818, 981, 2012
BssAI RCCGGY 2 cut(s) 1052, 1262
BssECI CCNNGG 7 cut(s) 166, 831, 1650, 1714, 1730, 1753, 2003
BssNAI GTATAC 1 cut(s) 1058
BssNI GRCGYC 1 cut(s) 72
BssSI CACGAG 1 cut(s) 1361
BssT1I CCWWGG 2 cut(s) 831, 1650
Bst1107I GTATAC 1 cut(s) 1058
Bst2BI CACGAG 1 cut(s) 1361
Bst2UI CCWGG 8 cut(s) 1312, 1458, 1605, 1695, 1715, 1731, 1755, 2004
Bst4CI ACNGT 3 cut(s) 386, 1581, 1740
Bst6I CTCTTC 5 cut(s) 446, 609, 747, 1158, 2110
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 2 cut(s) 314, 1151
BstC8I GCNNGC 4 cut(s) 1264, 1485, 1767, 2131
BstDEI CTNAG 4 cut(s) 16, 705, 954, 1417
BstDSI CCRYGG 1 cut(s) 1650
BstF5I GGATG 9 cut(s) 556, 568, 688, 751, 1308, 1671, 1782, 1827, 1901
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 1 cut(s) 704
BstMAI GTCTC 4 cut(s) 14, 587, 1213, 1420
BstMWI GCNNNNNNNGC 6 cut(s) 314, 710, 1151, 1382, 1469, 1519
BstNI CCWGG 8 cut(s) 1312, 1458, 1605, 1695, 1715, 1731, 1755, 2004
BstNSI RCATGY 2 cut(s) 1487, 1769
BstSFI CTRYAG 1 cut(s) 1410
BstV1I GCAGC 4 cut(s) 515, 840, 1363, 1639
BstV2I GAAGAC 2 cut(s) 387, 504
BstX2I RGATCY 2 cut(s) 962, 1120
BstYI RGATCY 2 cut(s) 962, 1120
BstZ17I GTATAC 1 cut(s) 1058
BsuRI GGCC 3 cut(s) 237, 1864, 2080
BtgI CCRYGG 1 cut(s) 1650
BtsCI GGATG 9 cut(s) 556, 568, 688, 751, 1308, 1671, 1782, 1827, 1901
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 408
BveI ACCTGC 2 cut(s) 1390, 2009
Cac8I GCNNGC 4 cut(s) 1264, 1485, 1767, 2131
CfoI GCGC 1 cut(s) 704
Cfr10I RCCGGY 2 cut(s) 1052, 1262
Cfr9I CCCGGG 1 cut(s) 166
CseI GACGC 3 cut(s) 80, 767, 2039
CsiI ACCWGGT 1 cut(s) 1693
Csp6I GTAC 3 cut(s) 885, 1582, 2055
CviAII CATG 7 cut(s) 1103, 1484, 1651, 1679, 1766, 1877, 1922
CviQI GTAC 3 cut(s) 885, 1582, 2055
DdeI CTNAG 4 cut(s) 16, 705, 954, 1417
Eam1104I CTCTTC 5 cut(s) 446, 609, 747, 1158, 2110
EarI CTCTTC 5 cut(s) 446, 609, 747, 1158, 2110
EciI GGCGGA 2 cut(s) 605, 1623
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 2 cut(s) 831, 1650
Eco24I GRGCYC 1 cut(s) 795
Eco31I GGTCTC 1 cut(s) 14
Eco32I GATATC 1 cut(s) 1170
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 2 cut(s) 321, 1356
Eco88I CYCGRG 3 cut(s) 166, 794, 1945
EcoICRI GAGCTC 1 cut(s) 793
EcoO109I RGGNCCY 4 cut(s) 61, 770, 1308, 1646
EcoRI GAATTC 2 cut(s) 1611, 1744
EcoRII CCWGG 8 cut(s) 1310, 1456, 1603, 1693, 1713, 1729, 1753, 2002
EcoRV GATATC 1 cut(s) 1170
EcoT14I CCWWGG 2 cut(s) 831, 1650
EcoT22I ATGCAT 5 cut(s) 1147, 1485, 1549, 1767, 1771
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 2 cut(s) 831, 1650
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 7 cut(s) 1106, 1487, 1654, 1682, 1769, 1880, 1925
FaqI GGGAC 4 cut(s) 74, 987, 1731, 1929
FatI CATG 7 cut(s) 1102, 1483, 1650, 1678, 1765, 1876, 1921
FauI CCCGC 1 cut(s) 178
FbaI TGATCA 1 cut(s) 1321
FblI GTMKAC 1 cut(s) 1057
Fnu4HI GCNGC 4 cut(s) 504, 854, 1377, 1628
FokI GGATG 9 cut(s) 563, 575, 695, 758, 1315, 1678, 1789, 1834, 1908
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 4 cut(s) 504, 854, 1377, 1628
FspBI CTAG 1 cut(s) 531
GlaI GCGC 1 cut(s) 703
GluI GCNGC 4 cut(s) 504, 854, 1377, 1628
GsaI CCCAGC 1 cut(s) 1339
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 3 cut(s) 237, 1864, 2080
HapII CCGG 4 cut(s) 167, 1053, 1263, 1868
HgaI GACGC 3 cut(s) 80, 767, 2039
HhaI GCGC 1 cut(s) 704
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 7 cut(s) 1106, 1487, 1654, 1682, 1769, 1880, 1925
Hin6I GCGC 1 cut(s) 702
HinP1I GCGC 1 cut(s) 702
HincII GTYRAC 5 cut(s) 1676, 1793, 1874, 1964, 2029
HindII GTYRAC 5 cut(s) 1676, 1793, 1874, 1964, 2029
HindIII AAGCTT 2 cut(s) 36, 50
HinfI GANTC 3 cut(s) 113, 131, 467
HpaII CCGG 4 cut(s) 167, 1053, 1263, 1868
HphI GGTGA 7 cut(s) 214, 304, 389, 701, 1033, 1323, 2033
Hpy166II GTNNAC 8 cut(s) 629, 1058, 1658, 1676, 1793, 1874, 1964, 2029
Hpy188I TCNGA 9 cut(s) 19, 256, 466, 472, 927, 1174, 1192, 1420, 1593
Hpy188III TCNNGA 4 cut(s) 1088, 1349, 1644, 1945
Hpy8I GTNNAC 8 cut(s) 629, 1058, 1658, 1676, 1793, 1874, 1964, 2029
Hpy99I CGWCG 4 cut(s) 80, 95, 1392, 2091
HpyCH4III ACNGT 3 cut(s) 386, 1581, 1740
HpyCH4IV ACGT 2 cut(s) 213, 1940
HpyF10VI GCNNNNNNNGC 6 cut(s) 314, 710, 1151, 1382, 1469, 1519
HpyF3I CTNAG 4 cut(s) 16, 705, 954, 1417
HpySE526I ACGT 2 cut(s) 213, 1940
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 7 cut(s) 1106, 1487, 1654, 1682, 1769, 1880, 1925
HspAI GCGC 1 cut(s) 702
KflI GGGWCCC 1 cut(s) 61
KpnI GGTACC 1 cut(s) 888
KroI GCCGGC 1 cut(s) 1262
KroNI GCCGGC 1 cut(s) 1264
Ksp22I TGATCA 1 cut(s) 1321
LmnI GCTCC 3 cut(s) 398, 418, 2038
Lsp1109I GCAGC 4 cut(s) 515, 840, 1363, 1639
LweI GCATC 4 cut(s) 515, 1132, 1154, 1752
MabI ACCWGGT 1 cut(s) 1693
MaeI CTAG 1 cut(s) 531
MaeII ACGT 2 cut(s) 213, 1940
MflI RGATCY 2 cut(s) 962, 1120
MhlI GDGCHC 2 cut(s) 795, 1110
MluCI AATT 7 cut(s) 987, 1184, 1611, 1744, 1809, 1978, 2042
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 3 cut(s) 349, 396, 1045
Mph1103I ATGCAT 5 cut(s) 1147, 1485, 1549, 1767, 1771
MroNI GCCGGC 1 cut(s) 1262
MroXI GAANNNNTTC 1 cut(s) 1748
MseI TTAA 1 cut(s) 822
MslI CAYNNNNRTG 1 cut(s) 1488
MspA1I CMGCKG 2 cut(s) 1376, 2133
MspI CCGG 4 cut(s) 167, 1053, 1263, 1868
Mva1269I GAATGC 2 cut(s) 1264, 1515
MvaI CCWGG 8 cut(s) 1312, 1458, 1605, 1695, 1715, 1731, 1755, 2004
MwoI GCNNNNNNNGC 6 cut(s) 314, 710, 1151, 1382, 1469, 1519
NaeI GCCGGC 1 cut(s) 1264
NciI CCSGG 3 cut(s) 167, 168, 1869
NcoI CCATGG 1 cut(s) 1650
NgoMIV GCCGGC 1 cut(s) 1262
NlaIII CATG 7 cut(s) 1106, 1487, 1654, 1682, 1769, 1880, 1925
NsiI ATGCAT 5 cut(s) 1147, 1485, 1549, 1767, 1771
NspI RCATGY 2 cut(s) 1487, 1769
PaeI GCATGC 2 cut(s) 1487, 1769
PaeR7I CTCGAG 1 cut(s) 794
PaqCI CACCTGC 2 cut(s) 1390, 2009
PcsI WCGNNNNNNNCGW 1 cut(s) 2095
PctI GAATGC 2 cut(s) 1264, 1515
PdiI GCCGGC 1 cut(s) 1264
PdmI GAANNNNTTC 1 cut(s) 1748
PfeI GAWTC 2 cut(s) 113, 467
PflFI GACNNNGTC 1 cut(s) 74
PflMI CCANNNNNTGG 2 cut(s) 1700, 2003
PfoI TCCNGGA 1 cut(s) 1310
PkrI GCNGC 4 cut(s) 505, 855, 1378, 1629
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PpuMI RGGWCCY 4 cut(s) 61, 770, 1308, 1646
PsiI TTATAA 1 cut(s) 1004
Psp124BI GAGCTC 1 cut(s) 795
Psp5II RGGWCCY 4 cut(s) 61, 770, 1308, 1646
Psp6I CCWGG 8 cut(s) 1310, 1456, 1603, 1693, 1713, 1729, 1753, 2002
PspFI CCCAGC 1 cut(s) 1335
PspGI CCWGG 8 cut(s) 1310, 1456, 1603, 1693, 1713, 1729, 1753, 2002
PspPPI RGGWCCY 4 cut(s) 61, 770, 1308, 1646
PspXI VCTCGAGB 1 cut(s) 794
PstI CTGCAG 1 cut(s) 1414
PsuI RGATCY 2 cut(s) 962, 1120
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 2 cut(s) 1376, 2133
RsaI GTAC 3 cut(s) 886, 1583, 2056
RsaNI GTAC 3 cut(s) 885, 1582, 2055
RseI CAYNNNNRTG 1 cut(s) 1488
SacI GAGCTC 1 cut(s) 795
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 4 cut(s) 504, 854, 1377, 1628
SchI GAGTC 1 cut(s) 140
SduI GDGCHC 2 cut(s) 795, 1110
SexAI ACCWGGT 1 cut(s) 1693
SfaNI GCATC 4 cut(s) 515, 1132, 1154, 1752
SfcI CTRYAG 1 cut(s) 1410
Sfr274I CTCGAG 1 cut(s) 794
SlaI CTCGAG 1 cut(s) 794
SmaI CCCGGG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 1488
SmlI CTYRAG 2 cut(s) 47, 794
SmoI CTYRAG 2 cut(s) 47, 794
SphI GCATGC 2 cut(s) 1487, 1769
Sse9I AATT 7 cut(s) 987, 1184, 1611, 1744, 1809, 1978, 2042
SsiI CCGC 5 cut(s) 185, 284, 290, 590, 1608
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 1 cut(s) 795
StyI CCWWGG 2 cut(s) 831, 1650
TaaI ACNGT 3 cut(s) 386, 1581, 1740
TaiI ACGT 2 cut(s) 216, 1943
TaqI TCGA 9 cut(s) 30, 78, 129, 429, 515, 735, 795, 2050, 2089
TaqII GACCGA 1 cut(s) 1774
TasI AATT 7 cut(s) 987, 1184, 1611, 1744, 1809, 1978, 2042
TatI WGTACW 1 cut(s) 2054
TfiI GAWTC 2 cut(s) 113, 467
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 1 cut(s) 408
TseI GCWGC 4 cut(s) 503, 853, 1376, 1627
TspDTI ATGAA 6 cut(s) 464, 486, 999, 1176, 1191, 1262
TspGWI ACGGA 1 cut(s) 957
TspMI CCCGGG 1 cut(s) 166
TspRI CASTG 1 cut(s) 408
Tth111I GACNNNGTC 1 cut(s) 74
Van91I CCANNNNNTGG 2 cut(s) 1700, 2003
XapI RAATTY 5 cut(s) 987, 1184, 1611, 1744, 1978
XceI RCATGY 2 cut(s) 1487, 1769
XcmI CCANNNNNNNNNTGG 2 cut(s) 1697, 1814
XhoI CTCGAG 1 cut(s) 794
XmaI CCCGGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 1057
XmnI GAANNNNTTC 1 cut(s) 1748
XspI CTAG 1 cut(s) 531
Zsp2I ATGCAT 5 cut(s) 1147, 1485, 1549, 1767, 1771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.