Rh2AG560800

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012463
Physical Location & Seq
Reverse (-)
79086403 .. 79089901
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG560800.1

Sequence Viewer

Length: 2181 bp
ATGGTAGGGTTCACCCCTGAAGTAGACCTCGATCAAGCTTCAAAGCTCAAGCTTTCAAAGGACCCACCTGACGCCGTTGATCCCAGACCCATCGACTTGTCCTTTGTAGATTCCTTGTTGGATTTTGACTCCATTGAGACTTGGTTCAGGGATTTTCCAAACCCAGATATGGCCGAGGCCGGGACGACGACTGTGGTGAAATCCGAGCCAATTGACTGTGAGCCTGGTTCTGTGGTGAAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCCGAACCAATTGATTGTGGGCTTGGTGGTGTGGTGAACGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAGGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGGAGTGGGTGAGGATTTGGAGACCAAAATCGAAGGTGTGGAGGGCAAAATGGAGAGTGGGATTGAGAGCGAAAGTTCGGAGTCGGAGAATGAGAGTGAGAGTTCATCAGCAGCATCATCTTCTTCGAGTAGTAGCTCTAGTGATGAGGAGGAGGAGGAGAGAGAGAGTGATGATATGGATGAGGAGAAGGATGGAGAAGGGAATGTGAAGGCGGAGGCGGAGAAGGAGGGCAATGAGGAGGCTTGTGAACTTGAAGAAGGTGAGATAAGTGGTGCAGAGCAGATAGGTAATGGAAGTGGTGGTGAGGACGATGAGGAGGGCGCTGAGGTTGCGTGGAGTGATGTTGATATTTTCGATGAGGGAGACGAGGAAGAGGAAGCTATAAAAGGTCCCATTCGTTCCAAAAATGAGCTCGAGGAACTTCCACCAGTTCCTCTGGTTAATGTGACCTTGGAACCACATCATCAAATGCTTCCTGTCGGAGTTGTTTTATCGGTTGTTGGTACCAAAGTCATTGTAGAAGGGGTTGAGAAGCACAACCCTCTGAACGAGGGTTCTATTCTGTGGATAACTGAAAGCAGGTCTCCGTTGGGACTGGTAGATGAAATTTTTGGACCTGTCATAAACCCTTACTATATGGTGAGATACAATACAGAAAGTGAAATCCCTGCCGGTATAGAAGTTGGAACACCAATCTCTTTTGTTCAGGAGTTTGCAGATCATGTGCTCAATAACAAAGATCTTTACAGAAAGGGTTATGATGCATCTGGTGCAAATGATGAAGAGGTATCAGATGAAGCAGAATTTTCAGATGATGAAAAAGAAGCTGAATACAAGAGACTGCAAAAAATGACAAAGAGGGGAATGAATGACCAGAATGCCGGCAGTAAGAAAAACAACAGAAAAAGAGGTAAAAATAAGATGGGTCCCTGGAAAAATGGTCAATCTTCACCCCAGCAAACACCTCCCAATCAACACCACGAGCATCTCTCTTCAGCTGCACCTGCTCGTCGTTATGGTCCATCTTCTTCTGCAGTCTCACAAGGTTTGGTTAGTGGGTGTGGATCAGTTCGACCATTTCCAGGTGCTACACAGGCCACTGGTATGAACGCAAATGGGGTTTGGTCAAATGGAATGCCGTGTCAGCCACAGCAAACACCCTTCCCTAATGCATTTCCAAATAATAATATGCCATTTTTTCCACAGTACCCTCATCAGATGTCTATGCCGGGCGGAATTCCATTCCATCAGCAGACAAATGTATTTTCTGGACCCATGGGTTCACAAGGGATGATGGGTCAACTTGGCTTCCACCAACCAGCATTTGGAGTAGGTTTCCAGGGACAACCTACACCAGTTCAACAGTTGAATTCCTTTCCAGGACCCATGAATGCATTTGGGATGAGTCAACATGGGTTCAACCAGAATGCATTTGGGATGGGTCAACAGGGATTCAACCCAAATGTTTTTGGGGTAGGTCAACAGGGTCAACATGGCTTCAACCCAAATGCGTTTGCGATGGTTCAACAGGGTCAGCATGGCTTCAACCAAAATACATTCGGGATAGGCTCACAGGGTCAACCTACAAACCTAAGCTTAGAACAGAATATGCCACAACCTGGGAACCCGGTTGTAGGTGATACTGACGCTCCCCAACAATTTAGTCGAAGTACATCTGCTAATCGTGGAAGAAGACCATTTCGTCGAGGGGGTCGTCAGTTTGCAGGGGGAAGAGGAAGAGGTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

726

Amino Acids

77.98

Weight (kDa)

4.5

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 301 - 382 6e-17 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1441
AasI GACNNNNNNGTC 1 cut(s) 2130
Acc36I ACCTGC 2 cut(s) 999, 1441
Acc65I GGTACC 1 cut(s) 932
AccB1I GGYRCC 1 cut(s) 932
AccB7I CCANNNNNTGG 2 cut(s) 1754, 2048
AccI GTMKAC 1 cut(s) 24
AciI CCGC 3 cut(s) 641, 647, 1662
AclWI GGATC 2 cut(s) 74, 1501
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 5 cut(s) 343, 1035, 1232, 1665, 1798
AcuI CTGAAG 3 cut(s) 39, 351, 1407
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 934, 1637, 2101
AfiI CCNNNNNNNGG 6 cut(s) 169, 180, 1511, 1754, 2048, 2063
AjnI CCWGG 6 cut(s) 223, 1358, 1510, 1767, 1807, 2047
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 9 cut(s) 38, 46, 52, 564, 809, 841, 1256, 1427, 2025
AluI AGCT 9 cut(s) 38, 46, 52, 564, 809, 841, 1256, 1427, 2025
Alw21I GWGCWC 2 cut(s) 843, 1158
Alw26I GTCTC 6 cut(s) 131, 443, 786, 1017, 1261, 1471
AlwI GGATC 2 cut(s) 74, 1501
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 4 cut(s) 171, 177, 265, 1524
ApeKI GCWGC 2 cut(s) 539, 1427
ApoI RAATTY 5 cut(s) 343, 1035, 1232, 1665, 1798
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 2170
Asp718I GGTACC 1 cut(s) 932
AspLEI GCGC 1 cut(s) 752
AspS9I GGNCC 8 cut(s) 61, 282, 818, 1043, 1355, 1448, 1700, 1811
AsuC2I CCSGG 3 cut(s) 181, 1659, 2057
AvaI CYCGRG 1 cut(s) 842
AvaII GGWCC 8 cut(s) 61, 282, 818, 1043, 1355, 1448, 1700, 1811
BaeI ACNNNNGTAYC 2 cut(s) 924, 957
BanI GGYRCC 1 cut(s) 932
BanII GRGCYC 1 cut(s) 843
BauI CACGAG 1 cut(s) 1409
BbsI GAAGAC 1 cut(s) 2128
Bbv12I GWGCWC 2 cut(s) 843, 1158
BbvCI CCTCAGC 1 cut(s) 753
BbvI GCAGC 2 cut(s) 551, 1414
BccI CCATC 8 cut(s) 98, 614, 1345, 1459, 1683, 1717, 1861, 1942
BceAI ACGGC 2 cut(s) 59, 1552
BciT130I CCWGG 6 cut(s) 225, 1360, 1512, 1769, 1809, 2049
BcnI CCSGG 3 cut(s) 181, 1659, 2057
BcoDI GTCTC 6 cut(s) 131, 443, 786, 1017, 1261, 1471
BfaI CTAG 2 cut(s) 567, 2175
BfmI CTRYAG 1 cut(s) 1461
BfoI RGCGCY 1 cut(s) 753
BfuAI ACCTGC 2 cut(s) 999, 1441
BglII AGATCT 1 cut(s) 1168
BisI GCNGC 2 cut(s) 540, 1428
BlsI GCNGC 2 cut(s) 541, 1429
Bme1390I CCNGG 9 cut(s) 181, 225, 1360, 1512, 1659, 1769, 1809, 2049, 2057
Bme18I GGWCC 8 cut(s) 61, 282, 818, 1043, 1355, 1448, 1700, 1811
BmeT110I CYCGRG 1 cut(s) 842
BmgT120I GGNCC 8 cut(s) 61, 282, 818, 1043, 1355, 1448, 1700, 1811
BmrFI CCNGG 9 cut(s) 181, 225, 1360, 1512, 1659, 1769, 1809, 2049, 2057
BmsI GCATC 4 cut(s) 551, 1180, 1202, 1423
BpiI GAAGAC 1 cut(s) 2128
BplI GAGNNNNNCTC 2 cut(s) 1403, 1435
Bpu10I CCTNAGC 2 cut(s) 753, 2021
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 3 cut(s) 181, 1659, 2057
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 443, 1017
BsaJI CCNNGG 6 cut(s) 174, 879, 1358, 1704, 1768, 2048
BsaXI ACNNNNNCTCC 2 cut(s) 2062, 2092
Bsc4I CCNNNNNNNGG 6 cut(s) 169, 180, 1511, 1754, 2048, 2063
Bse118I RCCGGY 2 cut(s) 1100, 1310
Bse1I ACTGG 4 cut(s) 857, 1029, 1534, 1784
Bse3DI GCAATG 1 cut(s) 667
BseBI CCWGG 6 cut(s) 225, 1360, 1512, 1769, 1809, 2049
BseDI CCNNGG 6 cut(s) 174, 879, 1358, 1704, 1768, 2048
BseGI GGATG 5 cut(s) 613, 625, 1725, 1836, 1872
BseLI CCNNNNNNNGG 6 cut(s) 169, 180, 1511, 1754, 2048, 2063
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 2 cut(s) 240, 744
BseNI ACTGG 4 cut(s) 857, 1029, 1534, 1784
BseRI GAGGAG 8 cut(s) 364, 590, 593, 596, 599, 626, 680, 758
BseXI GCAGC 2 cut(s) 551, 1414
BseYI CCCAGC 1 cut(s) 1383
BsgI GTGCAG 2 cut(s) 723, 1413
BshFI GGCC 4 cut(s) 173, 179, 267, 1526
BshNI GGYRCC 1 cut(s) 932
BsiHKAI GWGCWC 2 cut(s) 843, 1158
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 5 cut(s) 180, 1101, 1311, 1658, 2057
BslFI GGGAC 5 cut(s) 196, 804, 1035, 1341, 1785
BslI CCNNNNNNNGG 6 cut(s) 169, 180, 1511, 1754, 2048, 2063
BsmAI GTCTC 6 cut(s) 131, 443, 786, 1017, 1261, 1471
BsmBI CGTCTC 1 cut(s) 786
BsmFI GGGAC 5 cut(s) 196, 804, 1035, 1341, 1785
BsmI GAATGC 4 cut(s) 1312, 1569, 1825, 1861
BsnI GGCC 4 cut(s) 173, 179, 267, 1526
Bso31I GGTCTC 2 cut(s) 443, 1017
BsoBI CYCGRG 1 cut(s) 842
Bsp1286I GDGCHC 2 cut(s) 843, 1158
Bsp143I GATC 5 cut(s) 31, 79, 1147, 1168, 1493
Bsp19I CCATGG 1 cut(s) 1704
BspACI CCGC 3 cut(s) 641, 647, 1662
BspANI GGCC 4 cut(s) 173, 179, 267, 1526
BspCNI CTCAG 2 cut(s) 241, 745
BspMAI CTGCAG 1 cut(s) 1465
BspMI ACCTGC 2 cut(s) 999, 1441
BspPI GGATC 2 cut(s) 74, 1501
BspT107I GGYRCC 1 cut(s) 932
BspTNI GGTCTC 2 cut(s) 443, 1017
BsrDI GCAATG 1 cut(s) 667
BsrFI RCCGGY 2 cut(s) 1100, 1310
BsrI ACTGG 4 cut(s) 857, 1029, 1534, 1784
BssAI RCCGGY 2 cut(s) 1100, 1310
BssECI CCNNGG 6 cut(s) 174, 879, 1358, 1704, 1768, 2048
BssMI GATC 5 cut(s) 31, 79, 1147, 1168, 1493
BssNI GRCGYC 1 cut(s) 72
BssSI CACGAG 1 cut(s) 1409
BssT1I CCWWGG 2 cut(s) 879, 1704
Bst2BI CACGAG 1 cut(s) 1409
Bst2UI CCWGG 6 cut(s) 225, 1360, 1512, 1769, 1809, 2049
Bst4CI ACNGT 4 cut(s) 193, 218, 1635, 1794
Bst6I CTCTTC 6 cut(s) 360, 795, 1206, 1426, 2155, 2161
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 1199
BstC8I GCNNGC 1 cut(s) 1312
BstDEI CTNAG 4 cut(s) 249, 753, 2021, 2026
BstDSI CCRYGG 1 cut(s) 1704
BstF5I GGATG 5 cut(s) 613, 625, 1725, 1836, 1872
BstH2I RGCGCY 1 cut(s) 753
BstHHI GCGC 1 cut(s) 752
BstKTI GATC 5 cut(s) 34, 82, 1150, 1171, 1496
BstMAI GTCTC 6 cut(s) 131, 443, 786, 1017, 1261, 1471
BstMBI GATC 5 cut(s) 31, 79, 1147, 1168, 1493
BstMWI GCNNNNNNNGC 5 cut(s) 758, 1199, 1433, 1523, 1573
BstNI CCWGG 6 cut(s) 225, 1360, 1512, 1769, 1809, 2049
BstSCI CCNGG 9 cut(s) 179, 223, 1358, 1510, 1657, 1767, 1807, 2047, 2055
BstSFI CTRYAG 1 cut(s) 1461
BstV1I GCAGC 2 cut(s) 551, 1414
BstV2I GAAGAC 1 cut(s) 2128
BstX2I RGATCY 1 cut(s) 1168
BstYI RGATCY 1 cut(s) 1168
BsuRI GGCC 4 cut(s) 173, 179, 267, 1526
BtgI CCRYGG 1 cut(s) 1704
BtgZI GCGATG 1 cut(s) 1961
BtsCI GGATG 5 cut(s) 613, 625, 1725, 1836, 1872
BtsIMutI CAGTG 1 cut(s) 1527
BveI ACCTGC 2 cut(s) 999, 1441
Cac8I GCNNGC 1 cut(s) 1312
CfoI GCGC 1 cut(s) 752
Cfr10I RCCGGY 2 cut(s) 1100, 1310
Cfr13I GGNCC 8 cut(s) 61, 282, 818, 1043, 1355, 1448, 1700, 1811
CseI GACGC 2 cut(s) 80, 2084
Csp6I GTAC 3 cut(s) 933, 1636, 2100
CviAII CATG 6 cut(s) 1151, 1705, 1816, 1841, 1922, 1967
CviQI GTAC 3 cut(s) 933, 1636, 2100
DdeI CTNAG 4 cut(s) 249, 753, 2021, 2026
DpnI GATC 5 cut(s) 33, 81, 1149, 1170, 1495
DpnII GATC 5 cut(s) 31, 79, 1147, 1168, 1493
DrdI GACNNNNNNGTC 1 cut(s) 2130
DseDI GACNNNNNNGTC 1 cut(s) 2130
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 6 cut(s) 360, 795, 1206, 1426, 2155, 2161
EarI CTCTTC 6 cut(s) 360, 795, 1206, 1426, 2155, 2161
EciI GGCGGA 3 cut(s) 656, 662, 1677
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 2 cut(s) 879, 1704
Eco24I GRGCYC 1 cut(s) 843
Eco31I GGTCTC 2 cut(s) 443, 1017
Eco47I GGWCC 8 cut(s) 61, 282, 818, 1043, 1355, 1448, 1700, 1811
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 3 cut(s) 39, 351, 1407
Eco88I CYCGRG 1 cut(s) 842
EcoICRI GAGCTC 1 cut(s) 841
EcoO109I RGGNCCY 4 cut(s) 61, 818, 1355, 1811
EcoRI GAATTC 2 cut(s) 1665, 1798
EcoRII CCWGG 6 cut(s) 223, 1358, 1510, 1767, 1807, 2047
EcoT14I CCWWGG 2 cut(s) 879, 1704
EcoT22I ATGCAT 4 cut(s) 1195, 1603, 1825, 1861
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 2 cut(s) 879, 1704
Esp3I CGTCTC 1 cut(s) 786
FaeI CATG 6 cut(s) 1154, 1708, 1819, 1844, 1925, 1970
FaqI GGGAC 5 cut(s) 196, 804, 1035, 1341, 1785
FatI CATG 6 cut(s) 1150, 1704, 1815, 1840, 1921, 1966
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 540, 1428
FokI GGATG 5 cut(s) 620, 632, 1732, 1843, 1879
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 2 cut(s) 540, 1428
FspBI CTAG 2 cut(s) 567, 2175
GlaI GCGC 1 cut(s) 751
GluI GCNGC 2 cut(s) 540, 1428
GsaI CCCAGC 1 cut(s) 1387
HaeII RGCGCY 1 cut(s) 753
HaeIII GGCC 4 cut(s) 173, 179, 267, 1526
HapII CCGG 5 cut(s) 180, 1101, 1311, 1658, 2057
HgaI GACGC 2 cut(s) 80, 2084
HhaI GCGC 1 cut(s) 752
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 6 cut(s) 1154, 1708, 1819, 1844, 1925, 1970
Hin6I GCGC 1 cut(s) 750
HinP1I GCGC 1 cut(s) 750
HincII GTYRAC 6 cut(s) 1730, 1838, 1874, 1910, 1919, 2009
HindII GTYRAC 6 cut(s) 1730, 1838, 1874, 1910, 1919, 2009
HindIII AAGCTT 3 cut(s) 36, 50, 2023
HinfI GANTC 5 cut(s) 110, 128, 509, 1834, 1881
HpaII CCGG 5 cut(s) 180, 1101, 1311, 1658, 2057
Hpy188III TCNNGA 4 cut(s) 416, 1136, 1698, 1990
Hpy99I CGWCG 3 cut(s) 190, 1443, 2136
HpyCH4III ACNGT 4 cut(s) 193, 218, 1635, 1794
HpyCH4IV ACGT 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 5 cut(s) 758, 1199, 1433, 1523, 1573
HpyF3I CTNAG 4 cut(s) 249, 753, 2021, 2026
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 6 cut(s) 1154, 1708, 1819, 1844, 1925, 1970
HspAI GCGC 1 cut(s) 750
KflI GGGWCCC 1 cut(s) 1355
KpnI GGTACC 1 cut(s) 936
KroI GCCGGC 1 cut(s) 1310
KroNI GCCGGC 1 cut(s) 1312
Kzo9I GATC 5 cut(s) 31, 79, 1147, 1168, 1493
LmnI GCTCC 1 cut(s) 2083
Lsp1109I GCAGC 2 cut(s) 551, 1414
LweI GCATC 4 cut(s) 551, 1180, 1202, 1423
MaeI CTAG 2 cut(s) 567, 2175
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 874
MalI GATC 5 cut(s) 33, 81, 1149, 1170, 1495
MboI GATC 5 cut(s) 31, 79, 1147, 1168, 1493
MfeI CAATTG 2 cut(s) 210, 291
MflI RGATCY 1 cut(s) 1168
MhlI GDGCHC 2 cut(s) 843, 1158
MluCI AATT 8 cut(s) 210, 291, 343, 1035, 1232, 1665, 1798, 2087
MlyI GAGTC 3 cut(s) 122, 518, 1843
MmeI TCCRAC 5 cut(s) 99, 370, 492, 889, 1093
Mph1103I ATGCAT 4 cut(s) 1195, 1603, 1825, 1861
MroNI GCCGGC 1 cut(s) 1310
MroXI GAANNNNTTC 1 cut(s) 2170
MseI TTAA 2 cut(s) 276, 870
MslI CAYNNNNRTG 1 cut(s) 1532
MspA1I CMGCKG 1 cut(s) 1427
MspI CCGG 5 cut(s) 180, 1101, 1311, 1658, 2057
MspR9I CCNGG 9 cut(s) 181, 225, 1360, 1512, 1659, 1769, 1809, 2049, 2057
MunI CAATTG 2 cut(s) 210, 291
Mva1269I GAATGC 4 cut(s) 1312, 1569, 1825, 1861
MvaI CCWGG 6 cut(s) 225, 1360, 1512, 1769, 1809, 2049
MwoI GCNNNNNNNGC 5 cut(s) 758, 1199, 1433, 1523, 1573
NaeI GCCGGC 1 cut(s) 1312
NciI CCSGG 3 cut(s) 181, 1659, 2057
NcoI CCATGG 1 cut(s) 1704
NdeII GATC 5 cut(s) 31, 79, 1147, 1168, 1493
NgoMIV GCCGGC 1 cut(s) 1310
NlaIII CATG 6 cut(s) 1154, 1708, 1819, 1844, 1925, 1970
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 874
NsiI ATGCAT 4 cut(s) 1195, 1603, 1825, 1861
PaeR7I CTCGAG 1 cut(s) 842
PaqCI CACCTGC 1 cut(s) 1441
PcsI WCGNNNNNNNCGW 1 cut(s) 2140
PctI GAATGC 4 cut(s) 1312, 1569, 1825, 1861
PdiI GCCGGC 1 cut(s) 1312
PdmI GAANNNNTTC 1 cut(s) 2170
PfeI GAWTC 2 cut(s) 110, 1881
PflMI CCANNNNNTGG 2 cut(s) 1754, 2048
PfoI TCCNGGA 1 cut(s) 1807
PkrI GCNGC 2 cut(s) 541, 1429
PleI GAGTC 3 cut(s) 122, 517, 1842
PpsI GAGTC 3 cut(s) 122, 517, 1842
PpuMI RGGWCCY 4 cut(s) 61, 818, 1355, 1811
Psp124BI GAGCTC 1 cut(s) 843
Psp5II RGGWCCY 4 cut(s) 61, 818, 1355, 1811
Psp6I CCWGG 6 cut(s) 223, 1358, 1510, 1767, 1807, 2047
PspFI CCCAGC 1 cut(s) 1383
PspGI CCWGG 6 cut(s) 223, 1358, 1510, 1767, 1807, 2047
PspPI GGNCC 8 cut(s) 61, 282, 818, 1043, 1355, 1448, 1700, 1811
PspPPI RGGWCCY 4 cut(s) 61, 818, 1355, 1811
PspXI VCTCGAGB 1 cut(s) 842
PstI CTGCAG 1 cut(s) 1465
PsuI RGATCY 1 cut(s) 1168
PvuII CAGCTG 1 cut(s) 1427
RsaI GTAC 3 cut(s) 934, 1637, 2101
RsaNI GTAC 3 cut(s) 933, 1636, 2100
RseI CAYNNNNRTG 1 cut(s) 1532
SacI GAGCTC 1 cut(s) 843
SaqAI TTAA 2 cut(s) 276, 870
SatI GCNGC 2 cut(s) 540, 1428
Sau3AI GATC 5 cut(s) 31, 79, 1147, 1168, 1493
Sau96I GGNCC 8 cut(s) 61, 282, 818, 1043, 1355, 1448, 1700, 1811
SchI GAGTC 3 cut(s) 122, 518, 1843
ScrFI CCNGG 9 cut(s) 181, 225, 1360, 1512, 1659, 1769, 1809, 2049, 2057
SduI GDGCHC 2 cut(s) 843, 1158
SfaNI GCATC 4 cut(s) 551, 1180, 1202, 1423
SfcI CTRYAG 1 cut(s) 1461
Sfr274I CTCGAG 1 cut(s) 842
SinI GGWCC 8 cut(s) 61, 282, 818, 1043, 1355, 1448, 1700, 1811
SlaI CTCGAG 1 cut(s) 842
SmiMI CAYNNNNRTG 1 cut(s) 1532
SmlI CTYRAG 2 cut(s) 47, 842
SmoI CTYRAG 2 cut(s) 47, 842
Sse9I AATT 8 cut(s) 210, 291, 343, 1035, 1232, 1665, 1798, 2087
SsiI CCGC 3 cut(s) 641, 647, 1662
SspMI CTAG 2 cut(s) 567, 2175
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 9 cut(s) 179, 223, 1358, 1510, 1657, 1767, 1807, 2047, 2055
StyI CCWWGG 2 cut(s) 879, 1704
TaaI ACNGT 4 cut(s) 193, 218, 1635, 1794
TaiI ACGT 1 cut(s) 324
TaqI TCGA 9 cut(s) 30, 93, 459, 554, 783, 843, 1501, 2095, 2134
TasI AATT 8 cut(s) 210, 291, 343, 1035, 1232, 1665, 1798, 2087
TatI WGTACW 1 cut(s) 2099
TfiI GAWTC 2 cut(s) 110, 1881
Tru1I TTAA 2 cut(s) 276, 870
Tru9I TTAA 2 cut(s) 276, 870
TscAI CASTG 1 cut(s) 1534
TseFI GTSAC 1 cut(s) 874
TseI GCWGC 2 cut(s) 539, 1427
Tsp45I GTSAC 1 cut(s) 874
TspDTI ATGAA 9 cut(s) 414, 522, 1047, 1224, 1239, 1260, 1310, 1550, 1832
TspGWI ACGGA 1 cut(s) 1005
TspRI CASTG 1 cut(s) 1534
Van91I CCANNNNNTGG 2 cut(s) 1754, 2048
VpaK11BI GGWCC 8 cut(s) 61, 282, 818, 1043, 1355, 1448, 1700, 1811
XapI RAATTY 5 cut(s) 343, 1035, 1232, 1665, 1798
XcmI CCANNNNNNNNNTGG 3 cut(s) 275, 1751, 1859
XhoI CTCGAG 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 2170
XspI CTAG 2 cut(s) 567, 2175
Zsp2I ATGCAT 4 cut(s) 1195, 1603, 1825, 1861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.