Rh2DG584100

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012463
Physical Location & Seq
Reverse (-)
81522708 .. 81526100
3393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG584100.1

Sequence Viewer

Length: 2154 bp
ATGGTAGGGTTCACCCCTGAAGTAGACCTCGATCAAGCTTCAAAGCTCAAGCTTTCAAAGGACCCACCTGACGCCGTTGATCCCAGACCCATCGACTTGTCCTTTGTAGATTCCTTGTTGGATTTTGACTCCATTGAGACTTGGTTCAGGGATTTTCCAAACCCAGATATGGCCGAGGCCGGGACGACGACTGTGGTGAAATCCGAGCCAATTGACTGTGAGCCTGTTTCTGTGGTGAAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCCGAACCAATTGATTGTGGGCTTGGTGGTGTGGTGAACGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAGGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGGAGTGGGTGAGGATTTGGAGACCAAAATCGAAGGAGTGGAGGGTGTGGAGAGCAAAATGGAGAGTAGGATTGAGAGCGAAAGTTCGGAGTCGGAGAGTGAGAGTGAGAGTTCATCAGCAGCATCATCTTCTTCGAGTAGTAGCTCTAGTGATGAGGAGGAGGAGGAGGAGGAGAGAGAGAGTGATGATATGGATGAGGAGAAGGATGGAGAAGGGAATGTGAAGGCGGAGGCGGAGGGCAATGAGGAGGCTTGTGAACTTGAAGAAGGTGAGATAAGTGGTGCAGAGCAGATAGGTAATGGAAGTGGTGATGAGGACGATGAGGAGGGCGCTGAGGTTGCGTGGAGTGATGTTGATATTTTCGATGAGGGAGACGAGGAAGAGGAAGCTATAAAAGGCCCCATTCGTTCCAAAAATGAGCTCGAGGAACTTCCACCAGTTCCTCCAGTTAATGTGACCTTGGAACCACATCATCAAATGCTTCCTGTCGGAGTTGTTTTATCGGTTGTTGGTACCAAAGTCATTGTAGAAGGGGTTGAGAAGCACAACCCTCTGAACGAGGGTTCTATTCTGTGGATAACTGAAAGCAGGTCTCCGTTGGGACTGGTAGATGAAATTTTTGGACCTGTCATAAACCCTTACTATATGGTGAGATACAATACAGAAAGTGAAATCCCTGCCGGTATAGAAGTTGGAACACCAATCTCTTTTGTTCAGGAGTTTGCAGATCATGTGCTCAATAACAAAGATCTTTACAGAAAGGGTTATGATGCATCTGGTGCAAATGATGAAGAGGTATCAGATGAAGCAGAATTTTCAGATGATGAAAAAGAAGCTGAATACAAGAGACTGCAAAAAATGACAAAGAGGGGAATGAATGACCAGAATGCCGGCAGTAAGAAAAACAACAGAAAAAGAGGTAAAAATAAGATGGGTCCCTGGAAAAATGGTCAATCTTCACCCCAGCAAACACCTCCCAATCAACACCACGAGCATCTCTCTTCAGCTGCACCTGCTCGTCGTTATGGTCCATCTTCTTCTGCAGTCTCACAAGGTTTGGTTAGTGGGCATGGATCAGTTCGACCATTTCCAGGTGCTACACAGGCCACTGGTATGAACGCAAATGGGGTTTGGTCAAATGGAATGCCGTGTCAGCCACAGCAAACACCCTTCCCTAATGCATTTCCAAATAATAATATGCCATTTTTTCCACAGTACCCTCATCAGATGTCTATGCCGGGCGGAATTCCATTCCATCAGCAGACAAATGTATTTTCTGGACCCATGGGTTCACAAGGGATGATGGGTCAACTTGGCTTCCACCAACCAGCATTTGGAGTAGGTTTCCAGGGACAACCTACACCAGGTCAACAGTTGAATTCCTTTCCAGGACCCATGAATGCATTTGGGATGAGTCAACAGGGTCAACATGGGTTCAACCAAAATGCATTTGGGATGGGTCAACAGGGATTCAACCCAAATGTTTTTGGGGTAGGTCAACAGGGTCAACATGGCTTCAACCAAAATACATTCGGGATAGGCTCACAGGGTCAACCTACAAACCTAAGCTTAGAACAGAATATGCCACAACCTGGGAACCCGGTTGTAGGTGATGCTGACGCTCCCCAACAATTTAGTCGAAGTACATCTGCTAATCGTGGAAGAAGACCATTTCGTCGAGGGGGTCGTCAGTTTGCAGGGGGAAGAGGAAGAGGTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

717

Amino Acids

77.1

Weight (kDa)

4.47

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 304 - 385 5.9e-17 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1450
AasI GACNNNNNNGTC 1 cut(s) 2103
Acc36I ACCTGC 2 cut(s) 1008, 1450
Acc65I GGTACC 1 cut(s) 941
AccB1I GGYRCC 1 cut(s) 941
AccB7I CCANNNNNTGG 2 cut(s) 1763, 2021
AccI GTMKAC 1 cut(s) 24
AciI CCGC 3 cut(s) 656, 662, 1671
AclWI GGATC 2 cut(s) 74, 1510
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 5 cut(s) 343, 1044, 1241, 1674, 1807
AcuI CTGAAG 3 cut(s) 39, 351, 1416
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 943, 1646, 2074
AfiI CCNNNNNNNGG 7 cut(s) 169, 180, 1520, 1763, 1793, 2021, 2036
AgsI TTSAA 7 cut(s) 42, 57, 692, 1807, 1867, 1903, 1948
AjnI CCWGG 6 cut(s) 1367, 1519, 1776, 1792, 1816, 2020
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 9 cut(s) 38, 46, 52, 573, 818, 850, 1265, 1436, 1998
AluI AGCT 9 cut(s) 38, 46, 52, 573, 818, 850, 1265, 1436, 1998
Alw21I GWGCWC 2 cut(s) 852, 1167
Alw26I GTCTC 6 cut(s) 131, 443, 795, 1026, 1270, 1480
AlwI GGATC 2 cut(s) 74, 1510
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 5 cut(s) 171, 177, 265, 826, 1533
ApeKI GCWGC 2 cut(s) 548, 1436
ApoI RAATTY 5 cut(s) 343, 1044, 1241, 1674, 1807
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 2143
Asp718I GGTACC 1 cut(s) 941
AspLEI GCGC 1 cut(s) 761
AspS9I GGNCC 8 cut(s) 61, 282, 827, 1052, 1364, 1457, 1709, 1820
AsuC2I CCSGG 3 cut(s) 181, 1668, 2030
AvaI CYCGRG 1 cut(s) 851
AvaII GGWCC 7 cut(s) 61, 282, 1052, 1364, 1457, 1709, 1820
BaeI ACNNNNGTAYC 2 cut(s) 933, 966
BanI GGYRCC 1 cut(s) 941
BanII GRGCYC 1 cut(s) 852
BauI CACGAG 1 cut(s) 1418
BbsI GAAGAC 1 cut(s) 2101
Bbv12I GWGCWC 2 cut(s) 852, 1167
BbvCI CCTCAGC 1 cut(s) 762
BbvI GCAGC 2 cut(s) 560, 1423
BccI CCATC 7 cut(s) 98, 629, 1354, 1468, 1692, 1726, 1879
BceAI ACGGC 2 cut(s) 59, 1561
BciT130I CCWGG 6 cut(s) 1369, 1521, 1778, 1794, 1818, 2022
BcnI CCSGG 3 cut(s) 181, 1668, 2030
BcoDI GTCTC 6 cut(s) 131, 443, 795, 1026, 1270, 1480
BfaI CTAG 2 cut(s) 576, 2148
BfmI CTRYAG 1 cut(s) 1470
BfoI RGCGCY 1 cut(s) 762
BfuAI ACCTGC 2 cut(s) 1008, 1450
BglII AGATCT 1 cut(s) 1177
BisI GCNGC 2 cut(s) 549, 1437
BlsI GCNGC 2 cut(s) 550, 1438
Bme1390I CCNGG 9 cut(s) 181, 1369, 1521, 1668, 1778, 1794, 1818, 2022, 2030
Bme18I GGWCC 7 cut(s) 61, 282, 1052, 1364, 1457, 1709, 1820
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 8 cut(s) 61, 282, 827, 1052, 1364, 1457, 1709, 1820
BmrFI CCNGG 9 cut(s) 181, 1369, 1521, 1668, 1778, 1794, 1818, 2022, 2030
BmsI GCATC 5 cut(s) 560, 1189, 1211, 1432, 2032
BpiI GAAGAC 1 cut(s) 2101
BplI GAGNNNNNCTC 2 cut(s) 1412, 1444
BpmI CTGGAG 1 cut(s) 858
Bpu10I CCTNAGC 2 cut(s) 762, 1994
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 3 cut(s) 181, 1668, 2030
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 443, 1026
BsaJI CCNNGG 6 cut(s) 174, 888, 1367, 1713, 1777, 2021
Bsc4I CCNNNNNNNGG 7 cut(s) 169, 180, 1520, 1763, 1793, 2021, 2036
Bse118I RCCGGY 2 cut(s) 1109, 1319
Bse1I ACTGG 4 cut(s) 866, 875, 1038, 1543
Bse3DI GCAATG 1 cut(s) 676
BseBI CCWGG 6 cut(s) 1369, 1521, 1778, 1794, 1818, 2022
BseDI CCNNGG 6 cut(s) 174, 888, 1367, 1713, 1777, 2021
BseGI GGATG 5 cut(s) 628, 640, 1734, 1845, 1890
BseLI CCNNNNNNNGG 7 cut(s) 169, 180, 1520, 1763, 1793, 2021, 2036
BseMI GCAATG 1 cut(s) 676
BseMII CTCAG 2 cut(s) 240, 753
BseNI ACTGG 4 cut(s) 866, 875, 1038, 1543
BseXI GCAGC 2 cut(s) 560, 1423
BseYI CCCAGC 1 cut(s) 1392
BsgI GTGCAG 2 cut(s) 732, 1422
BshFI GGCC 5 cut(s) 173, 179, 267, 828, 1535
BshNI GGYRCC 1 cut(s) 941
BsiHKAI GWGCWC 2 cut(s) 852, 1167
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 5 cut(s) 180, 1110, 1320, 1667, 2030
BslFI GGGAC 4 cut(s) 196, 1044, 1350, 1794
BslI CCNNNNNNNGG 7 cut(s) 169, 180, 1520, 1763, 1793, 2021, 2036
BsmAI GTCTC 6 cut(s) 131, 443, 795, 1026, 1270, 1480
BsmBI CGTCTC 1 cut(s) 795
BsmFI GGGAC 4 cut(s) 196, 1044, 1350, 1794
BsmI GAATGC 3 cut(s) 1321, 1578, 1834
BsnI GGCC 5 cut(s) 173, 179, 267, 828, 1535
Bso31I GGTCTC 2 cut(s) 443, 1026
BsoBI CYCGRG 1 cut(s) 851
Bsp1286I GDGCHC 2 cut(s) 852, 1167
Bsp143I GATC 5 cut(s) 31, 79, 1156, 1177, 1502
Bsp19I CCATGG 1 cut(s) 1713
BspACI CCGC 3 cut(s) 656, 662, 1671
BspANI GGCC 5 cut(s) 173, 179, 267, 828, 1535
BspCNI CTCAG 2 cut(s) 241, 754
BspMAI CTGCAG 1 cut(s) 1474
BspMI ACCTGC 2 cut(s) 1008, 1450
BspPI GGATC 2 cut(s) 74, 1510
BspT107I GGYRCC 1 cut(s) 941
BspTNI GGTCTC 2 cut(s) 443, 1026
BsrDI GCAATG 1 cut(s) 676
BsrFI RCCGGY 2 cut(s) 1109, 1319
BsrI ACTGG 4 cut(s) 866, 875, 1038, 1543
BssAI RCCGGY 2 cut(s) 1109, 1319
BssECI CCNNGG 6 cut(s) 174, 888, 1367, 1713, 1777, 2021
BssMI GATC 5 cut(s) 31, 79, 1156, 1177, 1502
BssNI GRCGYC 1 cut(s) 72
BssSI CACGAG 1 cut(s) 1418
BssT1I CCWWGG 2 cut(s) 888, 1713
Bst2BI CACGAG 1 cut(s) 1418
Bst2UI CCWGG 6 cut(s) 1369, 1521, 1778, 1794, 1818, 2022
Bst4CI ACNGT 4 cut(s) 193, 218, 1644, 1803
Bst6I CTCTTC 6 cut(s) 360, 804, 1215, 1435, 2128, 2134
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 1208
BstC8I GCNNGC 1 cut(s) 1321
BstDEI CTNAG 4 cut(s) 249, 762, 1994, 1999
BstDSI CCRYGG 1 cut(s) 1713
BstENI CCTNNNNNAGG 1 cut(s) 1791
BstF5I GGATG 5 cut(s) 628, 640, 1734, 1845, 1890
BstH2I RGCGCY 1 cut(s) 762
BstHHI GCGC 1 cut(s) 761
BstKTI GATC 5 cut(s) 34, 82, 1159, 1180, 1505
BstMAI GTCTC 6 cut(s) 131, 443, 795, 1026, 1270, 1480
BstMBI GATC 5 cut(s) 31, 79, 1156, 1177, 1502
BstMWI GCNNNNNNNGC 5 cut(s) 767, 1208, 1442, 1532, 1582
BstNI CCWGG 6 cut(s) 1369, 1521, 1778, 1794, 1818, 2022
BstSCI CCNGG 9 cut(s) 179, 1367, 1519, 1666, 1776, 1792, 1816, 2020, 2028
BstSFI CTRYAG 1 cut(s) 1470
BstV1I GCAGC 2 cut(s) 560, 1423
BstV2I GAAGAC 1 cut(s) 2101
BstX2I RGATCY 1 cut(s) 1177
BstYI RGATCY 1 cut(s) 1177
BsuRI GGCC 5 cut(s) 173, 179, 267, 828, 1535
BtgI CCRYGG 1 cut(s) 1713
BtsCI GGATG 5 cut(s) 628, 640, 1734, 1845, 1890
BtsIMutI CAGTG 1 cut(s) 1536
BveI ACCTGC 2 cut(s) 1008, 1450
Cac8I GCNNGC 1 cut(s) 1321
CfoI GCGC 1 cut(s) 761
Cfr10I RCCGGY 2 cut(s) 1109, 1319
Cfr13I GGNCC 8 cut(s) 61, 282, 827, 1052, 1364, 1457, 1709, 1820
CseI GACGC 2 cut(s) 80, 2057
CsiI ACCWGGT 1 cut(s) 1792
Csp6I GTAC 3 cut(s) 942, 1645, 2073
CviAII CATG 6 cut(s) 1160, 1499, 1714, 1825, 1859, 1940
CviQI GTAC 3 cut(s) 942, 1645, 2073
DdeI CTNAG 4 cut(s) 249, 762, 1994, 1999
DpnI GATC 5 cut(s) 33, 81, 1158, 1179, 1504
DpnII GATC 5 cut(s) 31, 79, 1156, 1177, 1502
DrdI GACNNNNNNGTC 1 cut(s) 2103
DseDI GACNNNNNNGTC 1 cut(s) 2103
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 6 cut(s) 360, 804, 1215, 1435, 2128, 2134
EarI CTCTTC 6 cut(s) 360, 804, 1215, 1435, 2128, 2134
EciI GGCGGA 3 cut(s) 671, 677, 1686
Ecl136II GAGCTC 1 cut(s) 850
Eco130I CCWWGG 2 cut(s) 888, 1713
Eco24I GRGCYC 1 cut(s) 852
Eco31I GGTCTC 2 cut(s) 443, 1026
Eco47I GGWCC 7 cut(s) 61, 282, 1052, 1364, 1457, 1709, 1820
Eco53kI GAGCTC 1 cut(s) 850
Eco57I CTGAAG 3 cut(s) 39, 351, 1416
Eco88I CYCGRG 1 cut(s) 851
EcoICRI GAGCTC 1 cut(s) 850
EcoNI CCTNNNNNAGG 1 cut(s) 1791
EcoO109I RGGNCCY 4 cut(s) 61, 827, 1364, 1820
EcoRI GAATTC 2 cut(s) 1674, 1807
EcoRII CCWGG 6 cut(s) 1367, 1519, 1776, 1792, 1816, 2020
EcoT14I CCWWGG 2 cut(s) 888, 1713
EcoT22I ATGCAT 4 cut(s) 1204, 1612, 1834, 1879
EcoT38I GRGCYC 1 cut(s) 852
ErhI CCWWGG 2 cut(s) 888, 1713
Esp3I CGTCTC 1 cut(s) 795
FaeI CATG 6 cut(s) 1163, 1502, 1717, 1828, 1862, 1943
FaqI GGGAC 4 cut(s) 196, 1044, 1350, 1794
FatI CATG 6 cut(s) 1159, 1498, 1713, 1824, 1858, 1939
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 549, 1437
FokI GGATG 5 cut(s) 635, 647, 1741, 1852, 1897
FriOI GRGCYC 1 cut(s) 852
Fsp4HI GCNGC 2 cut(s) 549, 1437
FspBI CTAG 2 cut(s) 576, 2148
GlaI GCGC 1 cut(s) 760
GluI GCNGC 2 cut(s) 549, 1437
GsaI CCCAGC 1 cut(s) 1396
GsuI CTGGAG 1 cut(s) 858
HaeII RGCGCY 1 cut(s) 762
HaeIII GGCC 5 cut(s) 173, 179, 267, 828, 1535
HapII CCGG 5 cut(s) 180, 1110, 1320, 1667, 2030
HgaI GACGC 2 cut(s) 80, 2057
HhaI GCGC 1 cut(s) 761
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 6 cut(s) 1163, 1502, 1717, 1828, 1862, 1943
Hin6I GCGC 1 cut(s) 759
HinP1I GCGC 1 cut(s) 759
HincII GTYRAC 8 cut(s) 1739, 1799, 1847, 1856, 1892, 1928, 1937, 1982
HindII GTYRAC 8 cut(s) 1739, 1799, 1847, 1856, 1892, 1928, 1937, 1982
HindIII AAGCTT 3 cut(s) 36, 50, 1996
HinfI GANTC 5 cut(s) 110, 128, 518, 1843, 1899
HpaII CCGG 5 cut(s) 180, 1110, 1320, 1667, 2030
Hpy188III TCNNGA 4 cut(s) 416, 1145, 1707, 1963
Hpy99I CGWCG 3 cut(s) 190, 1452, 2109
HpyAV CCTTC 9 cut(s) 232, 370, 455, 625, 635, 646, 689, 953, 1609
HpyCH4III ACNGT 4 cut(s) 193, 218, 1644, 1803
HpyCH4IV ACGT 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 5 cut(s) 767, 1208, 1442, 1532, 1582
HpyF3I CTNAG 4 cut(s) 249, 762, 1994, 1999
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 6 cut(s) 1163, 1502, 1717, 1828, 1862, 1943
HspAI GCGC 1 cut(s) 759
KflI GGGWCCC 1 cut(s) 1364
KpnI GGTACC 1 cut(s) 945
KroI GCCGGC 1 cut(s) 1319
KroNI GCCGGC 1 cut(s) 1321
Kzo9I GATC 5 cut(s) 31, 79, 1156, 1177, 1502
LmnI GCTCC 1 cut(s) 2056
Lsp1109I GCAGC 2 cut(s) 560, 1423
LweI GCATC 5 cut(s) 560, 1189, 1211, 1432, 2032
MabI ACCWGGT 1 cut(s) 1792
MaeI CTAG 2 cut(s) 576, 2148
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 883
MalI GATC 5 cut(s) 33, 81, 1158, 1179, 1504
MboI GATC 5 cut(s) 31, 79, 1156, 1177, 1502
MfeI CAATTG 2 cut(s) 210, 291
MflI RGATCY 1 cut(s) 1177
MhlI GDGCHC 2 cut(s) 852, 1167
MluCI AATT 8 cut(s) 210, 291, 343, 1044, 1241, 1674, 1807, 2060
MlyI GAGTC 3 cut(s) 122, 527, 1852
MmeI TCCRAC 5 cut(s) 99, 370, 501, 898, 1102
Mph1103I ATGCAT 4 cut(s) 1204, 1612, 1834, 1879
MroNI GCCGGC 1 cut(s) 1319
MroXI GAANNNNTTC 1 cut(s) 2143
MseI TTAA 2 cut(s) 276, 879
MslI CAYNNNNRTG 1 cut(s) 1541
MspA1I CMGCKG 1 cut(s) 1436
MspI CCGG 5 cut(s) 180, 1110, 1320, 1667, 2030
MspR9I CCNGG 9 cut(s) 181, 1369, 1521, 1668, 1778, 1794, 1818, 2022, 2030
MunI CAATTG 2 cut(s) 210, 291
Mva1269I GAATGC 3 cut(s) 1321, 1578, 1834
MvaI CCWGG 6 cut(s) 1369, 1521, 1778, 1794, 1818, 2022
MwoI GCNNNNNNNGC 5 cut(s) 767, 1208, 1442, 1532, 1582
NaeI GCCGGC 1 cut(s) 1321
NciI CCSGG 3 cut(s) 181, 1668, 2030
NcoI CCATGG 1 cut(s) 1713
NdeII GATC 5 cut(s) 31, 79, 1156, 1177, 1502
NgoMIV GCCGGC 1 cut(s) 1319
NlaIII CATG 6 cut(s) 1163, 1502, 1717, 1828, 1862, 1943
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 883
NsiI ATGCAT 4 cut(s) 1204, 1612, 1834, 1879
PaeR7I CTCGAG 1 cut(s) 851
PaqCI CACCTGC 1 cut(s) 1450
PcsI WCGNNNNNNNCGW 1 cut(s) 2113
PctI GAATGC 3 cut(s) 1321, 1578, 1834
PdiI GCCGGC 1 cut(s) 1321
PdmI GAANNNNTTC 1 cut(s) 2143
PfeI GAWTC 2 cut(s) 110, 1899
PflMI CCANNNNNTGG 2 cut(s) 1763, 2021
PfoI TCCNGGA 1 cut(s) 1816
PkrI GCNGC 2 cut(s) 550, 1438
PleI GAGTC 3 cut(s) 122, 526, 1851
PpsI GAGTC 3 cut(s) 122, 526, 1851
PpuMI RGGWCCY 3 cut(s) 61, 1364, 1820
Psp124BI GAGCTC 1 cut(s) 852
Psp5II RGGWCCY 3 cut(s) 61, 1364, 1820
Psp6I CCWGG 6 cut(s) 1367, 1519, 1776, 1792, 1816, 2020
PspFI CCCAGC 1 cut(s) 1392
PspGI CCWGG 6 cut(s) 1367, 1519, 1776, 1792, 1816, 2020
PspPI GGNCC 8 cut(s) 61, 282, 827, 1052, 1364, 1457, 1709, 1820
PspPPI RGGWCCY 3 cut(s) 61, 1364, 1820
PspXI VCTCGAGB 1 cut(s) 851
PstI CTGCAG 1 cut(s) 1474
PsuI RGATCY 1 cut(s) 1177
PvuII CAGCTG 1 cut(s) 1436
RsaI GTAC 3 cut(s) 943, 1646, 2074
RsaNI GTAC 3 cut(s) 942, 1645, 2073
RseI CAYNNNNRTG 1 cut(s) 1541
SacI GAGCTC 1 cut(s) 852
SaqAI TTAA 2 cut(s) 276, 879
SatI GCNGC 2 cut(s) 549, 1437
Sau3AI GATC 5 cut(s) 31, 79, 1156, 1177, 1502
Sau96I GGNCC 8 cut(s) 61, 282, 827, 1052, 1364, 1457, 1709, 1820
SchI GAGTC 3 cut(s) 122, 527, 1852
ScrFI CCNGG 9 cut(s) 181, 1369, 1521, 1668, 1778, 1794, 1818, 2022, 2030
SduI GDGCHC 2 cut(s) 852, 1167
SexAI ACCWGGT 1 cut(s) 1792
SfaNI GCATC 5 cut(s) 560, 1189, 1211, 1432, 2032
SfcI CTRYAG 1 cut(s) 1470
Sfr274I CTCGAG 1 cut(s) 851
SinI GGWCC 7 cut(s) 61, 282, 1052, 1364, 1457, 1709, 1820
SlaI CTCGAG 1 cut(s) 851
SmiMI CAYNNNNRTG 1 cut(s) 1541
SmlI CTYRAG 2 cut(s) 47, 851
SmoI CTYRAG 2 cut(s) 47, 851
Sse9I AATT 8 cut(s) 210, 291, 343, 1044, 1241, 1674, 1807, 2060
SsiI CCGC 3 cut(s) 656, 662, 1671
SspMI CTAG 2 cut(s) 576, 2148
SstI GAGCTC 1 cut(s) 852
StyD4I CCNGG 9 cut(s) 179, 1367, 1519, 1666, 1776, 1792, 1816, 2020, 2028
StyI CCWWGG 2 cut(s) 888, 1713
TaaI ACNGT 4 cut(s) 193, 218, 1644, 1803
TaiI ACGT 1 cut(s) 324
TaqI TCGA 9 cut(s) 30, 93, 459, 563, 792, 852, 1510, 2068, 2107
TasI AATT 8 cut(s) 210, 291, 343, 1044, 1241, 1674, 1807, 2060
TatI WGTACW 1 cut(s) 2072
TfiI GAWTC 2 cut(s) 110, 1899
Tru1I TTAA 2 cut(s) 276, 879
Tru9I TTAA 2 cut(s) 276, 879
TscAI CASTG 1 cut(s) 1543
TseFI GTSAC 1 cut(s) 883
TseI GCWGC 2 cut(s) 548, 1436
Tsp45I GTSAC 1 cut(s) 883
TspDTI ATGAA 9 cut(s) 414, 531, 1056, 1233, 1248, 1269, 1319, 1559, 1841
TspGWI ACGGA 1 cut(s) 1014
TspRI CASTG 1 cut(s) 1543
Van91I CCANNNNNTGG 2 cut(s) 1763, 2021
VpaK11BI GGWCC 7 cut(s) 61, 282, 1052, 1364, 1457, 1709, 1820
XagI CCTNNNNNAGG 1 cut(s) 1791
XapI RAATTY 5 cut(s) 343, 1044, 1241, 1674, 1807
XcmI CCANNNNNNNNNTGG 3 cut(s) 275, 1760, 1877
XhoI CTCGAG 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 2143
XspI CTAG 2 cut(s) 576, 2148
Zsp2I ATGCAT 4 cut(s) 1204, 1612, 1834, 1879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.