RLG00000021322

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012463
Physical Location & Seq
Reverse (-)
74126660 .. 74129559
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021322

Sequence Viewer

Length: 2166 bp
ATGGTAGGGTTCACCCCCGAAGTAGACCTCGATCAAGCTTCAAAGCTCAAGCTTTCAAAGGACCCACCTGACGCCGTTGATCCCACCAGACCCATCGACTTGTCCTTTGTAGATTCCTTGTTGGATTTTGACTCCATTGAGACTTGGTTTAGGGATTTTCCAAACCCAGATATGGCCGAGGCTGGGACGACGACTGTGGTGAAATCCGAGCCAATAGACTGTGAGCCTGGTTCTGTGGTGAAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCTGACCCAATTGATTGTGGGCCTGGTAGTGTGGTGAAGGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAGGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGGAGTGAGTGAGGATTTGGAGACCAGAATCGAAGGTGTGGAGAGCAAAATGGAGAGTGGGAGGGAGAGTGAAAGTTCGGAGTCAGAGAGTGAGAGTTCATCAGCAGCATCGTCTTCGAGTAGTAGTTCTAGTGATGAGGAGGAGGAGGATGAGAGAGAGAGTGATGATATGGATGAGGAGAAGGATGGAGAAGGGAATGTGAAGGCGGAGGCGGAGAAGGAGGGCAATGAGGAGGCTTGTGAACTTGAAGAAGGTGAGATAAGTGGTGCAGAGCGGATAGGTAATGGAAGTGGTGATGAGGGCGCCGAGGTTGCGTGGAGTGATGTTGATATTTTCGATGAGGGAGACGAGGAAGAGGAAGCTATAAAAGGTCCCATTCGTTCCAAAAATGAGCTCGAGGAACTTCCATCAGTTCCTCCAGTTAATGCGACCTTGGAACCACATCATCAAATGCTGCCTGTCGGAGTTGTTTTATCGGTTGTTGATACCAAAGTCATTGTAGAAGGGGTTGAGAAGCACAACCCTCTGAACGAGGGTTCTATTCTGTGGATAACTGAAAGCAGGTCTCCGTTGGGACTGGTAGATGAAATTTTTGGACCTGTCATAAACCCTTACTATATGGTGAGATACAATACAGAAAGTGAAATCCCTGCCGGTATAGAAGTTGGAACACCAATCTCTTTTGTTCAGGAGTTTGCAGATCATGTGCTCAATAACAAAGATCTTTACAGAAAGGGTTATGATGCATCTGGTGCAAATGATGAAGAGGTATCAGATGAAGCAGAATTTTCAGATGATGAAAAAGAAGCTGAATACAAGAGAATGCAAAAAATGACAAAGAGGGGAATGAATGACCAGAATTCCGGCAGTAAGAAAAACAACAGAAAAAGAGGTAAAAATAAGATGGGTGGCTGGAAAAATGGTCAATCTTCACCCCAGCAAACACCTCCCGATCAACACCACGAGCATTTCTCTTCAGCTGCACCTGCTCGTCGTTATGGTCCATCTTCTTCTGCAGTCTCAGAAGGTTTGGTTAGTGGGCGTGGATCAGTTCGACCATTTCCAGGTGCTACACAGGCCACTGGTATGAACGCAAATGGAGTTTGGTCAAATGGAATGCCGTGTCAGCCACAGCAAACACCCTTCCATAATGCATTTCCAAATAATAATATGCCATTTTTTCCACAGTACCCTCATCAGATGTCTATGCCGGGCGGAATTCCATTCCATCAGCAGGCAAATGTATTTTCTGGACCCATGGGTTCACAAGGGATGATGGGTCAACTTGGCTTCCACCAACCAGCATTTGGAGTAGGTTTCCAGGGACAACCTACACCAGGTCAACAGTTGAATTCCTTTCCAGGACCCATGAATGCATTTGGTATGAGTCAACTGGGTCAACATGGGTTCAACCAAAATGCATTTGGGATGGGTCAACAGGGATTCAACCCAAATGTTTTTGGGGTAGGTCAACAGGGCTTCAACCCAAATGCGTTTGCGATGATTCAACAGGGTCAGCATGGCTTCAACCAAAATACATTCGGGACAGGCTCACAGGGTCAACCTACAAACCCAAGCTTAGAACAGAATATGCCACAACCTGGGAACCCGGTTGTAGGTGATGCTGACGCTCCCCAACAATTTAGTCGAAGTACATCTGCTAATCGTGGAAGAAGGCCATTTCGTCGAGGGGGTCGTCAGTTTGCAGGGGGAAGAGGAAGAGGTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

722

Amino Acids

77.6

Weight (kDa)

4.55

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 296 - 377 2e-17 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1426
Acc36I ACCTGC 2 cut(s) 984, 1426
AccB1I GGYRCC 1 cut(s) 734
AccB7I CCANNNNNTGG 2 cut(s) 1739, 2033
AccBSI CCGCTC 1 cut(s) 706
AccI GTMKAC 1 cut(s) 24
AciI CCGC 4 cut(s) 638, 644, 706, 1647
AclWI GGATC 2 cut(s) 74, 1486
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 6 cut(s) 346, 1020, 1217, 1291, 1650, 1783
AcuI CTGAAG 2 cut(s) 354, 1392
AcyI GRCGYC 2 cut(s) 72, 735
AfaI GTAC 2 cut(s) 1622, 2086
AfiI CCNNNNNNNGG 8 cut(s) 172, 183, 1496, 1666, 1739, 1769, 2033, 2048
AgsI TTSAA 9 cut(s) 42, 57, 680, 1783, 1843, 1879, 1915, 1940, 1960
AjnI CCWGG 7 cut(s) 226, 307, 1495, 1752, 1768, 1792, 2032
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 8 cut(s) 38, 46, 52, 794, 826, 1241, 1412, 2010
AluI AGCT 8 cut(s) 38, 46, 52, 794, 826, 1241, 1412, 2010
Alw21I GWGCWC 2 cut(s) 828, 1143
Alw26I GTCTC 5 cut(s) 134, 446, 771, 1002, 1456
AlwI GGATC 2 cut(s) 74, 1486
Ama87I CYCGRG 1 cut(s) 827
AoxI GGCC 5 cut(s) 174, 268, 305, 1509, 2108
ApeKI GCWGC 3 cut(s) 536, 886, 1412
ApoI RAATTY 6 cut(s) 346, 1020, 1217, 1291, 1650, 1783
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
Asp700I GAANNNNTTC 1 cut(s) 2155
AspLEI GCGC 1 cut(s) 737
AspS9I GGNCC 7 cut(s) 61, 305, 803, 1028, 1433, 1685, 1796
AsuC2I CCSGG 2 cut(s) 1644, 2042
AvaI CYCGRG 1 cut(s) 827
AvaII GGWCC 6 cut(s) 61, 803, 1028, 1433, 1685, 1796
BaeI ACNNNNGTAYC 2 cut(s) 909, 942
BanI GGYRCC 1 cut(s) 734
BanII GRGCYC 1 cut(s) 828
BauI CACGAG 1 cut(s) 1394
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 2 cut(s) 828, 1143
BbvI GCAGC 3 cut(s) 548, 873, 1399
BccI CCATC 8 cut(s) 101, 611, 847, 1330, 1444, 1668, 1702, 1855
BceAI ACGGC 2 cut(s) 59, 1537
BcgI CGANNNNNNTGC 2 cut(s) 528, 562
BciT130I CCWGG 7 cut(s) 228, 309, 1497, 1754, 1770, 1794, 2034
BcnI CCSGG 2 cut(s) 1644, 2042
BcoDI GTCTC 5 cut(s) 134, 446, 771, 1002, 1456
BfaI CTAG 2 cut(s) 561, 2160
BfmI CTRYAG 1 cut(s) 1446
BfoI RGCGCY 1 cut(s) 738
BfuAI ACCTGC 2 cut(s) 984, 1426
BglII AGATCT 1 cut(s) 1153
BisI GCNGC 3 cut(s) 537, 887, 1413
BlsI GCNGC 3 cut(s) 538, 888, 1414
Bme1390I CCNGG 9 cut(s) 228, 309, 1497, 1644, 1754, 1770, 1794, 2034, 2042
Bme18I GGWCC 6 cut(s) 61, 803, 1028, 1433, 1685, 1796
BmeT110I CYCGRG 1 cut(s) 827
BmgT120I GGNCC 7 cut(s) 61, 305, 803, 1028, 1433, 1685, 1796
BmiI GGNNCC 7 cut(s) 63, 736, 805, 870, 1687, 1798, 2039
BmrFI CCNGG 9 cut(s) 228, 309, 1497, 1644, 1754, 1770, 1794, 2034, 2042
BmrI ACTGGG 1 cut(s) 1835
BmsI GCATC 4 cut(s) 548, 1165, 1187, 2044
BmuI ACTGGG 1 cut(s) 1835
BpiI GAAGAC 1 cut(s) 537
BplI GAGNNNNNCTC 2 cut(s) 1388, 1420
BpmI CTGGAG 1 cut(s) 834
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 2 cut(s) 1644, 2042
BsaHI GRCGYC 2 cut(s) 72, 735
BsaI GGTCTC 2 cut(s) 446, 1002
BsaJI CCNNGG 6 cut(s) 177, 738, 864, 1689, 1753, 2033
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bsc4I CCNNNNNNNGG 8 cut(s) 172, 183, 1496, 1666, 1739, 1769, 2033, 2048
Bse118I RCCGGY 1 cut(s) 1085
Bse1I ACTGG 4 cut(s) 851, 1014, 1519, 1830
Bse3DI GCAATG 1 cut(s) 664
BseBI CCWGG 7 cut(s) 228, 309, 1497, 1754, 1770, 1794, 2034
BseDI CCNNGG 6 cut(s) 177, 738, 864, 1689, 1753, 2033
BseGI GGATG 5 cut(s) 586, 610, 622, 1710, 1866
BseLI CCNNNNNNNGG 8 cut(s) 172, 183, 1496, 1666, 1739, 1769, 2033, 2048
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 2 cut(s) 243, 1467
BseNI ACTGG 4 cut(s) 851, 1014, 1519, 1830
BseRI GAGGAG 6 cut(s) 367, 584, 587, 590, 623, 677
BseXI GCAGC 3 cut(s) 548, 873, 1399
BseYI CCCAGC 2 cut(s) 182, 1368
BsgI GTGCAG 2 cut(s) 720, 1398
BshFI GGCC 5 cut(s) 176, 270, 307, 1511, 2110
BshNI GGYRCC 1 cut(s) 734
BsiHKAI GWGCWC 2 cut(s) 828, 1143
BsiHKCI CYCGRG 1 cut(s) 827
BsiSI CCGG 4 cut(s) 1086, 1296, 1643, 2042
BslFI GGGAC 5 cut(s) 199, 789, 1020, 1770, 1990
BslI CCNNNNNNNGG 8 cut(s) 172, 183, 1496, 1666, 1739, 1769, 2033, 2048
BsmAI GTCTC 5 cut(s) 134, 446, 771, 1002, 1456
BsmBI CGTCTC 1 cut(s) 771
BsmFI GGGAC 5 cut(s) 199, 789, 1020, 1770, 1990
BsmI GAATGC 3 cut(s) 1260, 1554, 1810
BsnI GGCC 5 cut(s) 176, 270, 307, 1511, 2110
Bso31I GGTCTC 2 cut(s) 446, 1002
BsoBI CYCGRG 1 cut(s) 827
Bsp1286I GDGCHC 2 cut(s) 828, 1143
Bsp143I GATC 6 cut(s) 31, 79, 1132, 1153, 1384, 1478
Bsp19I CCATGG 1 cut(s) 1689
BspACI CCGC 4 cut(s) 638, 644, 706, 1647
BspANI GGCC 5 cut(s) 176, 270, 307, 1511, 2110
BspCNI CTCAG 2 cut(s) 244, 1466
BspLI GGNNCC 7 cut(s) 63, 736, 805, 870, 1687, 1798, 2039
BspMAI CTGCAG 1 cut(s) 1450
BspMI ACCTGC 2 cut(s) 984, 1426
BspPI GGATC 2 cut(s) 74, 1486
BspT107I GGYRCC 1 cut(s) 734
BspTNI GGTCTC 2 cut(s) 446, 1002
BsrBI CCGCTC 1 cut(s) 706
BsrDI GCAATG 1 cut(s) 664
BsrFI RCCGGY 1 cut(s) 1085
BsrI ACTGG 4 cut(s) 851, 1014, 1519, 1830
BssAI RCCGGY 1 cut(s) 1085
BssECI CCNNGG 6 cut(s) 177, 738, 864, 1689, 1753, 2033
BssMI GATC 6 cut(s) 31, 79, 1132, 1153, 1384, 1478
BssNI GRCGYC 2 cut(s) 72, 735
BssSI CACGAG 1 cut(s) 1394
BssT1I CCWWGG 2 cut(s) 864, 1689
Bst2BI CACGAG 1 cut(s) 1394
Bst2UI CCWGG 7 cut(s) 228, 309, 1497, 1754, 1770, 1794, 2034
Bst4CI ACNGT 4 cut(s) 196, 221, 1620, 1779
Bst6I CTCTTC 6 cut(s) 363, 780, 1191, 1411, 2140, 2146
BstACI GRCGYC 2 cut(s) 72, 735
BstAPI GCANNNNNTGC 1 cut(s) 1184
BstC8I GCNNGC 1 cut(s) 1668
BstDEI CTNAG 3 cut(s) 252, 1453, 2011
BstDSI CCRYGG 1 cut(s) 1689
BstENI CCTNNNNNAGG 1 cut(s) 1767
BstF5I GGATG 5 cut(s) 586, 610, 622, 1710, 1866
BstH2I RGCGCY 1 cut(s) 738
BstHHI GCGC 1 cut(s) 737
BstKTI GATC 6 cut(s) 34, 82, 1135, 1156, 1387, 1481
BstMAI GTCTC 5 cut(s) 134, 446, 771, 1002, 1456
BstMBI GATC 6 cut(s) 31, 79, 1132, 1153, 1384, 1478
BstMWI GCNNNNNNNGC 5 cut(s) 743, 1184, 1418, 1508, 1558
BstNI CCWGG 7 cut(s) 228, 309, 1497, 1754, 1770, 1794, 2034
BstSCI CCNGG 9 cut(s) 226, 307, 1495, 1642, 1752, 1768, 1792, 2032, 2040
BstSFI CTRYAG 1 cut(s) 1446
BstV1I GCAGC 3 cut(s) 548, 873, 1399
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 1 cut(s) 1153
BstYI RGATCY 1 cut(s) 1153
BsuRI GGCC 5 cut(s) 176, 270, 307, 1511, 2110
BtgI CCRYGG 1 cut(s) 1689
BtgZI GCGATG 1 cut(s) 1946
BtsCI GGATG 5 cut(s) 586, 610, 622, 1710, 1866
BtsIMutI CAGTG 1 cut(s) 1512
BveI ACCTGC 2 cut(s) 984, 1426
Cac8I GCNNGC 1 cut(s) 1668
CfoI GCGC 1 cut(s) 737
Cfr10I RCCGGY 1 cut(s) 1085
Cfr13I GGNCC 7 cut(s) 61, 305, 803, 1028, 1433, 1685, 1796
CseI GACGC 2 cut(s) 80, 2069
CsiI ACCWGGT 1 cut(s) 1768
Csp6I GTAC 2 cut(s) 1621, 2085
CviAII CATG 5 cut(s) 1136, 1690, 1801, 1835, 1952
CviQI GTAC 2 cut(s) 1621, 2085
DdeI CTNAG 3 cut(s) 252, 1453, 2011
DinI GGCGCC 1 cut(s) 736
DpnI GATC 6 cut(s) 33, 81, 1134, 1155, 1386, 1480
DpnII GATC 6 cut(s) 31, 79, 1132, 1153, 1384, 1478
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 6 cut(s) 363, 780, 1191, 1411, 2140, 2146
EarI CTCTTC 6 cut(s) 363, 780, 1191, 1411, 2140, 2146
EciI GGCGGA 3 cut(s) 653, 659, 1662
Ecl136II GAGCTC 1 cut(s) 826
Eco130I CCWWGG 2 cut(s) 864, 1689
Eco24I GRGCYC 1 cut(s) 828
Eco31I GGTCTC 2 cut(s) 446, 1002
Eco47I GGWCC 6 cut(s) 61, 803, 1028, 1433, 1685, 1796
Eco53kI GAGCTC 1 cut(s) 826
Eco57I CTGAAG 2 cut(s) 354, 1392
Eco88I CYCGRG 1 cut(s) 827
EcoICRI GAGCTC 1 cut(s) 826
EcoNI CCTNNNNNAGG 1 cut(s) 1767
EcoO109I RGGNCCY 3 cut(s) 61, 803, 1796
EcoRI GAATTC 3 cut(s) 1291, 1650, 1783
EcoRII CCWGG 7 cut(s) 226, 307, 1495, 1752, 1768, 1792, 2032
EcoT14I CCWWGG 2 cut(s) 864, 1689
EcoT22I ATGCAT 4 cut(s) 1180, 1588, 1810, 1855
EcoT38I GRGCYC 1 cut(s) 828
EgeI GGCGCC 1 cut(s) 736
EheI GGCGCC 1 cut(s) 736
ErhI CCWWGG 2 cut(s) 864, 1689
Esp3I CGTCTC 1 cut(s) 771
FaeI CATG 5 cut(s) 1139, 1693, 1804, 1838, 1955
FaqI GGGAC 5 cut(s) 199, 789, 1020, 1770, 1990
FatI CATG 5 cut(s) 1135, 1689, 1800, 1834, 1951
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 537, 887, 1413
FokI GGATG 5 cut(s) 593, 617, 629, 1717, 1873
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 3 cut(s) 537, 887, 1413
FspBI CTAG 2 cut(s) 561, 2160
GlaI GCGC 1 cut(s) 736
GluI GCNGC 3 cut(s) 537, 887, 1413
GsaI CCCAGC 2 cut(s) 186, 1372
GsuI CTGGAG 1 cut(s) 834
HaeII RGCGCY 1 cut(s) 738
HaeIII GGCC 5 cut(s) 176, 270, 307, 1511, 2110
HapII CCGG 4 cut(s) 1086, 1296, 1643, 2042
HgaI GACGC 2 cut(s) 80, 2069
HhaI GCGC 1 cut(s) 737
Hin1I GRCGYC 2 cut(s) 72, 735
Hin1II CATG 5 cut(s) 1139, 1693, 1804, 1838, 1955
Hin6I GCGC 1 cut(s) 735
HinP1I GCGC 1 cut(s) 735
HincII GTYRAC 7 cut(s) 1715, 1775, 1823, 1832, 1868, 1904, 1994
HindII GTYRAC 7 cut(s) 1715, 1775, 1823, 1832, 1868, 1904, 1994
HindIII AAGCTT 3 cut(s) 36, 50, 2008
HinfI GANTC 7 cut(s) 113, 131, 459, 512, 1819, 1875, 1936
HpaII CCGG 4 cut(s) 1086, 1296, 1643, 2042
Hpy188III TCNNGA 5 cut(s) 419, 1121, 1382, 1683, 1975
Hpy99I CGWCG 3 cut(s) 193, 1428, 2121
HpyCH4III ACNGT 4 cut(s) 196, 221, 1620, 1779
HpyF10VI GCNNNNNNNGC 5 cut(s) 743, 1184, 1418, 1508, 1558
HpyF3I CTNAG 3 cut(s) 252, 1453, 2011
Hsp92I GRCGYC 2 cut(s) 72, 735
Hsp92II CATG 5 cut(s) 1139, 1693, 1804, 1838, 1955
HspAI GCGC 1 cut(s) 735
KasI GGCGCC 1 cut(s) 734
Kzo9I GATC 6 cut(s) 31, 79, 1132, 1153, 1384, 1478
LmnI GCTCC 1 cut(s) 2068
Lsp1109I GCAGC 3 cut(s) 548, 873, 1399
LweI GCATC 4 cut(s) 548, 1165, 1187, 2044
MabI ACCWGGT 1 cut(s) 1768
MaeI CTAG 2 cut(s) 561, 2160
MalI GATC 6 cut(s) 33, 81, 1134, 1155, 1386, 1480
MbiI CCGCTC 1 cut(s) 706
MboI GATC 6 cut(s) 31, 79, 1132, 1153, 1384, 1478
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 1153
MhlI GDGCHC 2 cut(s) 828, 1143
MluCI AATT 8 cut(s) 294, 346, 1020, 1217, 1291, 1650, 1783, 2072
Mly113I GGCGCC 1 cut(s) 735
MlyI GAGTC 3 cut(s) 125, 521, 1828
MmeI TCCRAC 4 cut(s) 102, 373, 874, 1078
Mph1103I ATGCAT 4 cut(s) 1180, 1588, 1810, 1855
MroXI GAANNNNTTC 1 cut(s) 2155
MseI TTAA 2 cut(s) 279, 855
MslI CAYNNNNRTG 1 cut(s) 1517
MspA1I CMGCKG 1 cut(s) 1412
MspI CCGG 4 cut(s) 1086, 1296, 1643, 2042
MspR9I CCNGG 9 cut(s) 228, 309, 1497, 1644, 1754, 1770, 1794, 2034, 2042
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 3 cut(s) 1260, 1554, 1810
MvaI CCWGG 7 cut(s) 228, 309, 1497, 1754, 1770, 1794, 2034
MwoI GCNNNNNNNGC 5 cut(s) 743, 1184, 1418, 1508, 1558
NarI GGCGCC 1 cut(s) 735
NciI CCSGG 2 cut(s) 1644, 2042
NcoI CCATGG 1 cut(s) 1689
NdeII GATC 6 cut(s) 31, 79, 1132, 1153, 1384, 1478
NlaIII CATG 5 cut(s) 1139, 1693, 1804, 1838, 1955
NlaIV GGNNCC 7 cut(s) 63, 736, 805, 870, 1687, 1798, 2039
NmeAIII GCCGAG 2 cut(s) 202, 763
NsiI ATGCAT 4 cut(s) 1180, 1588, 1810, 1855
PaeR7I CTCGAG 1 cut(s) 827
PaqCI CACCTGC 1 cut(s) 1426
PcsI WCGNNNNNNNCGW 1 cut(s) 2125
PctI GAATGC 3 cut(s) 1260, 1554, 1810
PdmI GAANNNNTTC 1 cut(s) 2155
PfeI GAWTC 4 cut(s) 113, 459, 1875, 1936
PflMI CCANNNNNTGG 2 cut(s) 1739, 2033
PfoI TCCNGGA 1 cut(s) 1792
PkrI GCNGC 3 cut(s) 538, 888, 1414
PleI GAGTC 3 cut(s) 125, 520, 1827
PluTI GGCGCC 1 cut(s) 738
PpsI GAGTC 3 cut(s) 125, 520, 1827
PpuMI RGGWCCY 3 cut(s) 61, 803, 1796
Psp124BI GAGCTC 1 cut(s) 828
Psp5II RGGWCCY 3 cut(s) 61, 803, 1796
Psp6I CCWGG 7 cut(s) 226, 307, 1495, 1752, 1768, 1792, 2032
PspFI CCCAGC 2 cut(s) 182, 1368
PspGI CCWGG 7 cut(s) 226, 307, 1495, 1752, 1768, 1792, 2032
PspN4I GGNNCC 7 cut(s) 63, 736, 805, 870, 1687, 1798, 2039
PspPI GGNCC 7 cut(s) 61, 305, 803, 1028, 1433, 1685, 1796
PspPPI RGGWCCY 3 cut(s) 61, 803, 1796
PspXI VCTCGAGB 1 cut(s) 827
PstI CTGCAG 1 cut(s) 1450
PsuI RGATCY 1 cut(s) 1153
PvuII CAGCTG 1 cut(s) 1412
RsaI GTAC 2 cut(s) 1622, 2086
RsaNI GTAC 2 cut(s) 1621, 2085
RseI CAYNNNNRTG 1 cut(s) 1517
SacI GAGCTC 1 cut(s) 828
SaqAI TTAA 2 cut(s) 279, 855
SatI GCNGC 3 cut(s) 537, 887, 1413
Sau3AI GATC 6 cut(s) 31, 79, 1132, 1153, 1384, 1478
Sau96I GGNCC 7 cut(s) 61, 305, 803, 1028, 1433, 1685, 1796
SchI GAGTC 3 cut(s) 125, 521, 1828
ScrFI CCNGG 9 cut(s) 228, 309, 1497, 1644, 1754, 1770, 1794, 2034, 2042
SduI GDGCHC 2 cut(s) 828, 1143
SexAI ACCWGGT 1 cut(s) 1768
SfaNI GCATC 4 cut(s) 548, 1165, 1187, 2044
SfcI CTRYAG 1 cut(s) 1446
SfoI GGCGCC 1 cut(s) 736
Sfr274I CTCGAG 1 cut(s) 827
SinI GGWCC 6 cut(s) 61, 803, 1028, 1433, 1685, 1796
SlaI CTCGAG 1 cut(s) 827
SmiMI CAYNNNNRTG 1 cut(s) 1517
SmlI CTYRAG 2 cut(s) 47, 827
SmoI CTYRAG 2 cut(s) 47, 827
Sse9I AATT 8 cut(s) 294, 346, 1020, 1217, 1291, 1650, 1783, 2072
SsiI CCGC 4 cut(s) 638, 644, 706, 1647
SspDI GGCGCC 1 cut(s) 734
SspMI CTAG 2 cut(s) 561, 2160
SstI GAGCTC 1 cut(s) 828
StyD4I CCNGG 9 cut(s) 226, 307, 1495, 1642, 1752, 1768, 1792, 2032, 2040
StyI CCWWGG 2 cut(s) 864, 1689
TaaI ACNGT 4 cut(s) 196, 221, 1620, 1779
TaqI TCGA 9 cut(s) 30, 96, 462, 548, 768, 828, 1486, 2080, 2119
TasI AATT 8 cut(s) 294, 346, 1020, 1217, 1291, 1650, 1783, 2072
TatI WGTACW 1 cut(s) 2084
TfiI GAWTC 4 cut(s) 113, 459, 1875, 1936
Tru1I TTAA 2 cut(s) 279, 855
Tru9I TTAA 2 cut(s) 279, 855
TscAI CASTG 1 cut(s) 1519
TseI GCWGC 3 cut(s) 536, 886, 1412
TspDTI ATGAA 9 cut(s) 417, 519, 1032, 1209, 1224, 1245, 1295, 1535, 1817
TspGWI ACGGA 1 cut(s) 990
TspRI CASTG 1 cut(s) 1519
Van91I CCANNNNNTGG 2 cut(s) 1739, 2033
VpaK11BI GGWCC 6 cut(s) 61, 803, 1028, 1433, 1685, 1796
XagI CCTNNNNNAGG 1 cut(s) 1767
XapI RAATTY 6 cut(s) 346, 1020, 1217, 1291, 1650, 1783
XcmI CCANNNNNNNNNTGG 3 cut(s) 278, 1736, 1853
XhoI CTCGAG 1 cut(s) 827
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 2155
XspI CTAG 2 cut(s) 561, 2160
Zsp2I ATGCAT 4 cut(s) 1180, 1588, 1810, 1855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.