MD17G1081900.v1.1

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012463
Physical Location & Seq
Forward (+)
6833929 .. 6837414
3486 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1081900.v1.1.491

Sequence Viewer

Length: 2289 bp
ATGGTAGGGCTCATCCCTCAGCTAACACTCGAAGACCTCGATCCAGTTTCAAAGCCCAAGTATTCGAAGGACCCGCCCGACTCCGTTGATCCCAGAGACCTTTCGGTTGCAGATTCCTTCTTGGATTTTGATTCCATAGAGGATTGGTTCAAGAATATTGATATGGCGGAAACAGGGCAGTTTAAGGCTGAGGCGATTGACGCAGAGTATATTGGAGGTGGGTTCGAGCTGGCGGGTGATGGGTCTGTGCCGATTGATTGCGGGTCTGGTTGTGCGGTGAAGGTGGAGGGTCAAATTTTGGAGTATTCGGGTTGTTTGATTGCGGAAGGGTTGGGGAAGGTTAATTTGCTTGGAGGGTGTGAAGAAAGTTCGGTTCTTGATGGTGGGAATGGTATGAAGAGTGAAGTAGTGAGTTCAGTTCTTGATGGTGGGAATGGTATGAAGAGTGAAGTAGTGAGTTGTGATACCGGGGAAATGAAACCGGTGAGTAATGAGAATGGGAGTGAGGGTTTGAAGTCGAAGATTGAAGGCGGGAATGGGATGGGGAGCGAAATGGTGAGTGGGAATGGTGGGAAGAGTGGAGCAGGGAATGGTGAGTCCGAGAGTGAAAGCTCGGAGTCTGAGAGTGAGAGTTCAGAGTCGTCGTCATCATCATCATCTGAGAGTAGTAACTCTAGTGATGATGACAGCAGTGATGATGAAGAGGAGGAAAACAGGAAAGGGAAGATGAATGTGGAGGTGCAGGAAAGCAACGAGGGTGGTGAAATGGAAGAAGGTGAAATAAGGGATGCTGATGGAGGGGAGGAGGAAGATAAGATATTCGGTATGGATAATGAAAGTGAGGATGATGATGATGAAGATGAAATGGTTGCTTGGGCCGATGCTGAAACTTTTGACGAGGGAGACGGCAATGAGGATGATGTTGGAGATCTGAAAGGACCCATTAGGTCCAAGAATGAGCTTGAGGTGCTTCCCCCAATTCCTCCAGTGGAGGTGACTTTGCAACCACATCATCAGATGCAACCTGTGGGAGTTGTCTTATCGGTTCTTGGTACCCAAGTCATTGTAGAAGGGGTTGAGAAGCACAACCCTCTAAACGAGGGTTCGATTTTGTGGGTAACTGAAAGTAGATCTCCGTTGGGGTTGATAGATGAAATCTTTGGACCTGTCATACAACCTTACTATGTGGTGAGATACAATTCAGAAAGTGAAATACCTAGTGGAATACAAACGGGAATTTTGGTCTCTTTCGTTCCGGAGTTTGCAGATCATGTGCTTAATAACAAGGATGTTTACCGAAAGGGTTATGATGCATCTGGTGCAAATGATGAAGAGATATCAGATGAGGCAGAATTTTCAGATGATGAGAAAGAGGCTGAATACAGGAGGATGCAAAAAATGTCGAAGAGGGGAATGAATGACCAAAATGTTGGCAATAAGAAAAACAACAGAAAATGGGGTAAAAATAAGTCAGGACCCTGGAAAAATGGTCAACCTTCACCTCAGCAAGCACCAATGGATGCGGGTAAGCAGCCTCCCAATCAACACCACCATCCTTTTTCTCCAGGTGTACCATCTTCTGCTGCAGTATCACAAGGATTGGTTAGTCGGAATGGATTAGTTCCACCATTTCCAGCTCCTACACAGGTCGCTGGTATCAACACAACTTCAAATGGAGGTTGGACAAATGGAGTGCCGTTTCAGCCACAAAACACATCCTTCCCTAACGGATTTCCAAATAATAATTTTCCAAGTCTTCCACAGTATAATCCTCAATATCCTTATCAAATGCCTATTCAGAACAGAATGCCGTTCTATCAGCAGGCTGGTGCTGTCTTAGCGGGCCAACAGTTGAACGCCTTTGCAGGACCTGTGTATTCACAAGGGATGATGGATCAACATGGATTCAATCAAACAGCATTTGGGTTAGGTTTACAGGGCCAACCCATACCAGGCCAACAATTCAATGCCTTTGCAGAACCCACGGTGGGTCAACTTGGTTTCAACCAAAACGCGTTCGGGATGGGATTACAGGGCCAACCTTCTCACCCAATTTTCAATGCAGATCAAGGAATGCCATCAAATGGATTACATTCTGAACAAAACCATAATTCGCCACAATCCGTCGCAAATGCAGGCAATGTGGACAGCCAGCAATATGATCAGGGCGCACCTTCTAATCATGGAAGGAGACCCTCCCAAAGAGGGGGTCGTAATTTTGGAAGGAGACCCTCCCATAGAGGGGGTCGTAATTTTGGAAGGGGAAGAGGCAGGCAGCAATCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

763

Amino Acids

81.77

Weight (kDa)

4.43

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 341 - 420 7.8e-16 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1052
AccB1I GGYRCC 1 cut(s) 1052
AccB7I CCANNNNNTGG 1 cut(s) 2084
AccII CGCG 1 cut(s) 2015
AccIII TCCGGA 1 cut(s) 1255
AciI CCGC 9 cut(s) 74, 167, 233, 261, 275, 323, 531, 1523, 1841
AclWI GGATC 3 cut(s) 35, 83, 1902
AcsI RAATTY 3 cut(s) 294, 1236, 1352
AfaI GTAC 2 cut(s) 1054, 1572
AfiI CCNNNNNNNGG 7 cut(s) 1952, 1988, 2084, 2205, 2206, 2241, 2242
AflIII ACRYGT 1 cut(s) 2013
AgeI ACCGGT 1 cut(s) 481
AjnI CCWGG 3 cut(s) 1478, 1564, 1951
AluBI AGCT 5 cut(s) 22, 229, 612, 961, 1637
AluI AGCT 5 cut(s) 22, 229, 612, 961, 1637
Alw26I GTCTC 5 cut(s) 90, 897, 1249, 2185, 2221
AlwI GGATC 3 cut(s) 35, 83, 1902
AlwNI CAGNNNCTG 1 cut(s) 1871
Aor13HI TCCGGA 1 cut(s) 1255
AoxI GGCC 5 cut(s) 876, 1843, 1939, 1954, 2035
ApeKI GCWGC 3 cut(s) 1531, 1583, 2275
ApoI RAATTY 3 cut(s) 294, 1236, 1352
ArsI GACNNNNNNTTYG 2 cut(s) 2194, 2226
AsiGI ACCGGT 1 cut(s) 481
Asp718I GGTACC 1 cut(s) 1052
AspLEI GCGC 1 cut(s) 2171
AsuC2I CCSGG 1 cut(s) 469
AsuII TTCGAA 1 cut(s) 65
AvaII GGWCC 6 cut(s) 70, 938, 948, 1163, 1475, 1868
BaeI ACNNNNGTAYC 2 cut(s) 1044, 1077
BanI GGYRCC 1 cut(s) 1052
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 2 cut(s) 39, 1748
BbvCI CCTCAGC 3 cut(s) 18, 189, 1503
BbvI GCAGC 2 cut(s) 1543, 1570
BceAI ACGGC 3 cut(s) 922, 1681, 1795
BciT130I CCWGG 3 cut(s) 1480, 1566, 1953
BclI TGATCA 1 cut(s) 2161
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 5 cut(s) 90, 897, 1249, 2185, 2221
BfaI CTAG 2 cut(s) 675, 1218
BfmI CTRYAG 1 cut(s) 1584
BglII AGATCT 2 cut(s) 928, 1130
BisI GCNGC 3 cut(s) 1532, 1584, 2276
BlsI GCNGC 3 cut(s) 1533, 1585, 2277
Bme1390I CCNGG 4 cut(s) 469, 1480, 1566, 1953
Bme18I GGWCC 6 cut(s) 70, 938, 948, 1163, 1475, 1868
BmiI GGNNCC 4 cut(s) 72, 940, 1054, 1477
BmrFI CCNGG 4 cut(s) 469, 1480, 1566, 1953
BmsI GCATC 7 cut(s) 778, 871, 1008, 1300, 1322, 1380, 1510
BpiI GAAGAC 2 cut(s) 39, 1748
BpmI CTGGAG 2 cut(s) 969, 1548
Bpu10I CCTNAGC 3 cut(s) 18, 189, 1503
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 983
BpuMI CCSGG 1 cut(s) 469
BsaI GGTCTC 4 cut(s) 90, 1249, 2185, 2221
BsaJI CCNNGG 3 cut(s) 468, 1478, 1983
BsaWI WCCGGW 2 cut(s) 481, 1255
BsaXI ACNNNNNCTCC 2 cut(s) 493, 523
Bsc4I CCNNNNNNNGG 7 cut(s) 1952, 1988, 2084, 2205, 2206, 2241, 2242
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 44, 986
Bse3DI GCAATG 2 cut(s) 916, 2146
BseAI TCCGGA 1 cut(s) 1255
BseBI CCWGG 3 cut(s) 1480, 1566, 1953
BseDI CCNNGG 3 cut(s) 468, 1478, 1983
BseLI CCNNNNNNNGG 7 cut(s) 1952, 1988, 2084, 2205, 2206, 2241, 2242
BseMI GCAATG 2 cut(s) 916, 2146
BseMII CTCAG 5 cut(s) 32, 180, 612, 651, 1517
BseNI ACTGG 2 cut(s) 44, 986
BseRI GAGGAG 2 cut(s) 719, 818
BseXI GCAGC 2 cut(s) 1543, 1570
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 1 cut(s) 2015
BshFI GGCC 5 cut(s) 878, 1845, 1941, 1956, 2037
BshNI GGYRCC 1 cut(s) 1052
BshTI ACCGGT 1 cut(s) 481
BsiSI CCGG 3 cut(s) 468, 482, 1256
BslI CCNNNNNNNGG 7 cut(s) 1952, 1988, 2084, 2205, 2206, 2241, 2242
BsmAI GTCTC 5 cut(s) 90, 897, 1249, 2185, 2221
BsmBI CGTCTC 1 cut(s) 897
BsmI GAATGC 2 cut(s) 1812, 2079
BsnI GGCC 5 cut(s) 878, 1845, 1941, 1956, 2037
Bso31I GGTCTC 4 cut(s) 90, 1249, 2185, 2221
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 1255
Bsp143I GATC 8 cut(s) 40, 88, 928, 1130, 1267, 1894, 2065, 2161
BspACI CCGC 9 cut(s) 74, 167, 233, 261, 275, 323, 531, 1523, 1841
BspANI GGCC 5 cut(s) 878, 1845, 1941, 1956, 2037
BspCNI CTCAG 5 cut(s) 31, 181, 613, 652, 1516
BspEI TCCGGA 1 cut(s) 1255
BspFNI CGCG 1 cut(s) 2015
BspLI GGNNCC 4 cut(s) 72, 940, 1054, 1477
BspMAI CTGCAG 1 cut(s) 1588
BspPI GGATC 3 cut(s) 35, 83, 1902
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 1052
BspTNI GGTCTC 4 cut(s) 90, 1249, 2185, 2221
BsrDI GCAATG 2 cut(s) 916, 2146
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 2 cut(s) 44, 986
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 3 cut(s) 468, 1478, 1983
BssMI GATC 8 cut(s) 40, 88, 928, 1130, 1267, 1894, 2065, 2161
Bst2UI CCWGG 3 cut(s) 1480, 1566, 1953
Bst4CI ACNGT 3 cut(s) 1764, 1851, 1987
Bst6I CTCTTC 7 cut(s) 392, 437, 569, 696, 1326, 1400, 2260
BstAPI GCANNNNNTGC 1 cut(s) 1319
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 7 cut(s) 231, 1509, 1824, 1843, 2137, 2153, 2273
BstDEI CTNAG 6 cut(s) 18, 189, 621, 660, 1503, 1837
BstDSI CCRYGG 1 cut(s) 1983
BstFNI CGCG 1 cut(s) 2015
BstHHI GCGC 1 cut(s) 2171
BstKTI GATC 8 cut(s) 43, 91, 931, 1133, 1270, 1897, 2068, 2164
BstMAI GTCTC 5 cut(s) 90, 897, 1249, 2185, 2221
BstMBI GATC 8 cut(s) 40, 88, 928, 1130, 1267, 1894, 2065, 2161
BstMWI GCNNNNNNNGC 5 cut(s) 200, 967, 1319, 1702, 1838
BstNI CCWGG 3 cut(s) 1480, 1566, 1953
BstSCI CCNGG 4 cut(s) 467, 1478, 1564, 1951
BstSFI CTRYAG 1 cut(s) 1584
BstUI CGCG 1 cut(s) 2015
BstV1I GCAGC 2 cut(s) 1543, 1570
BstV2I GAAGAC 2 cut(s) 39, 1748
BstX2I RGATCY 2 cut(s) 928, 1130
BstXI CCANNNNNNTGG 1 cut(s) 1430
BstYI RGATCY 2 cut(s) 928, 1130
BsuRI GGCC 5 cut(s) 878, 1845, 1941, 1956, 2037
BtgI CCRYGG 1 cut(s) 1983
BtsI GCAGTG 1 cut(s) 697
BtsIMutI CAGTG 2 cut(s) 697, 993
Cac8I GCNNGC 7 cut(s) 231, 1509, 1824, 1843, 2137, 2153, 2273
CaiI CAGNNNCTG 1 cut(s) 1871
CfoI GCGC 1 cut(s) 2171
Cfr10I RCCGGY 1 cut(s) 481
CseI GACGC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 1053, 1571
CspAI ACCGGT 1 cut(s) 481
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviAII CATG 3 cut(s) 1271, 1901, 2183
CviQI GTAC 2 cut(s) 1053, 1571
DdeI CTNAG 6 cut(s) 18, 189, 621, 660, 1503, 1837
DpnI GATC 8 cut(s) 42, 90, 930, 1132, 1269, 1896, 2067, 2163
DpnII GATC 8 cut(s) 40, 88, 928, 1130, 1267, 1894, 2065, 2161
Eam1104I CTCTTC 7 cut(s) 392, 437, 569, 696, 1326, 1400, 2260
EarI CTCTTC 7 cut(s) 392, 437, 569, 696, 1326, 1400, 2260
EciI GGCGGA 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 4 cut(s) 90, 1249, 2185, 2221
Eco32I GATATC 1 cut(s) 1338
Eco47I GGWCC 6 cut(s) 70, 938, 948, 1163, 1475, 1868
EcoO109I RGGNCCY 4 cut(s) 70, 938, 1475, 1868
EcoRII CCWGG 3 cut(s) 1478, 1564, 1951
EcoRV GATATC 1 cut(s) 1338
EcoT22I ATGCAT 1 cut(s) 1315
EcoT38I GRGCYC 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 897
FaeI CATG 3 cut(s) 1274, 1904, 2186
FatI CATG 3 cut(s) 1270, 1900, 2182
FauI CCCGC 6 cut(s) 81, 226, 254, 524, 1516, 1834
FbaI TGATCA 1 cut(s) 2161
Fnu4HI GCNGC 3 cut(s) 1532, 1584, 2276
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 3 cut(s) 1532, 1584, 2276
FspBI CTAG 2 cut(s) 675, 1218
GlaI GCGC 1 cut(s) 2170
GluI GCNGC 3 cut(s) 1532, 1584, 2276
GsuI CTGGAG 2 cut(s) 969, 1548
HaeIII GGCC 5 cut(s) 878, 1845, 1941, 1956, 2037
HapII CCGG 3 cut(s) 468, 482, 1256
HgaI GACGC 1 cut(s) 209
HhaI GCGC 1 cut(s) 2171
Hin1II CATG 3 cut(s) 1274, 1904, 2186
Hin6I GCGC 1 cut(s) 2169
HinP1I GCGC 1 cut(s) 2169
HincII GTYRAC 2 cut(s) 1493, 1994
HindII GTYRAC 2 cut(s) 1493, 1994
HinfI GANTC 7 cut(s) 80, 113, 131, 596, 617, 638, 1905
HpaII CCGG 3 cut(s) 468, 482, 1256
Hpy166II GTNNAC 6 cut(s) 1294, 1493, 1571, 1934, 1994, 2146
Hpy188III TCNNGA 6 cut(s) 151, 377, 422, 1256, 1473, 2020
Hpy8I GTNNAC 6 cut(s) 1294, 1493, 1571, 1934, 1994, 2146
Hpy99I CGWCG 2 cut(s) 646, 2129
HpyCH4III ACNGT 3 cut(s) 1764, 1851, 1987
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 967, 1319, 1702, 1838
HpyF3I CTNAG 6 cut(s) 18, 189, 621, 660, 1503, 1837
Hsp92II CATG 3 cut(s) 1274, 1904, 2186
HspAI GCGC 1 cut(s) 2169
Kpn2I TCCGGA 1 cut(s) 1255
KpnI GGTACC 1 cut(s) 1056
Ksp22I TGATCA 1 cut(s) 2161
Kzo9I GATC 8 cut(s) 40, 88, 928, 1130, 1267, 1894, 2065, 2161
LmnI GCTCC 3 cut(s) 546, 581, 1642
Lsp1109I GCAGC 2 cut(s) 1543, 1570
LweI GCATC 7 cut(s) 778, 871, 1008, 1300, 1322, 1380, 1510
MaeI CTAG 2 cut(s) 675, 1218
MaeIII GTNAC 3 cut(s) 668, 994, 1117
MalI GATC 8 cut(s) 42, 90, 930, 1132, 1269, 1896, 2067, 2163
MboI GATC 8 cut(s) 40, 88, 928, 1130, 1267, 1894, 2065, 2161
MflI RGATCY 2 cut(s) 928, 1130
MhlI GDGCHC 1 cut(s) 12
MluI ACGCGT 1 cut(s) 2013
MlyI GAGTC 4 cut(s) 74, 605, 626, 647
MmeI TCCRAC 3 cut(s) 904, 1589, 1661
Mph1103I ATGCAT 1 cut(s) 1315
MroI TCCGGA 1 cut(s) 1255
MseI TTAA 3 cut(s) 183, 342, 1278
MspI CCGG 3 cut(s) 468, 482, 1256
MspR9I CCNGG 4 cut(s) 469, 1480, 1566, 1953
Mva1269I GAATGC 2 cut(s) 1812, 2079
MvaI CCWGG 3 cut(s) 1480, 1566, 1953
MvnI CGCG 1 cut(s) 2015
MwoI GCNNNNNNNGC 5 cut(s) 200, 967, 1319, 1702, 1838
NciI CCSGG 1 cut(s) 469
NdeII GATC 8 cut(s) 40, 88, 928, 1130, 1267, 1894, 2065, 2161
NlaIII CATG 3 cut(s) 1274, 1904, 2186
NlaIV GGNNCC 4 cut(s) 72, 940, 1054, 1477
NmuCI GTSAC 1 cut(s) 994
NsiI ATGCAT 1 cut(s) 1315
NspV TTCGAA 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 2 cut(s) 1812, 2079
PfeI GAWTC 3 cut(s) 113, 131, 1905
PflMI CCANNNNNTGG 1 cut(s) 2084
PinAI ACCGGT 1 cut(s) 481
PkrI GCNGC 3 cut(s) 1533, 1585, 2277
PleI GAGTC 4 cut(s) 74, 604, 625, 646
PpsI GAGTC 4 cut(s) 74, 604, 625, 646
PpuMI RGGWCCY 4 cut(s) 70, 938, 1475, 1868
Psp5II RGGWCCY 4 cut(s) 70, 938, 1475, 1868
Psp6I CCWGG 3 cut(s) 1478, 1564, 1951
PspGI CCWGG 3 cut(s) 1478, 1564, 1951
PspN4I GGNNCC 4 cut(s) 72, 940, 1054, 1477
PspPPI RGGWCCY 4 cut(s) 70, 938, 1475, 1868
PstI CTGCAG 1 cut(s) 1588
PstNI CAGNNNCTG 1 cut(s) 1871
PsuI RGATCY 2 cut(s) 928, 1130
RsaI GTAC 2 cut(s) 1054, 1572
RsaNI GTAC 2 cut(s) 1053, 1571
SaqAI TTAA 3 cut(s) 183, 342, 1278
SatI GCNGC 3 cut(s) 1532, 1584, 2276
Sau3AI GATC 8 cut(s) 40, 88, 928, 1130, 1267, 1894, 2065, 2161
SchI GAGTC 4 cut(s) 74, 605, 626, 647
ScrFI CCNGG 4 cut(s) 469, 1480, 1566, 1953
SduI GDGCHC 1 cut(s) 12
SfaNI GCATC 7 cut(s) 778, 871, 1008, 1300, 1322, 1380, 1510
SfcI CTRYAG 1 cut(s) 1584
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 6 cut(s) 70, 938, 948, 1163, 1475, 1868
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
SsiI CCGC 9 cut(s) 74, 167, 233, 261, 275, 323, 531, 1523, 1841
SspI AATATT 1 cut(s) 157
SspMI CTAG 2 cut(s) 675, 1218
StyD4I CCNGG 4 cut(s) 467, 1478, 1564, 1951
TaaI ACNGT 3 cut(s) 1764, 1851, 1987
TaqI TCGA 8 cut(s) 30, 39, 65, 225, 518, 1106, 1403, 2282
TfiI GAWTC 3 cut(s) 113, 131, 1905
Tru1I TTAA 3 cut(s) 183, 342, 1278
Tru9I TTAA 3 cut(s) 183, 342, 1278
TscAI CASTG 2 cut(s) 697, 993
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 3 cut(s) 1531, 1583, 2275
Tsp45I GTSAC 1 cut(s) 994
TspGWI ACGGA 4 cut(s) 73, 1125, 1743, 2113
TspRI CASTG 2 cut(s) 697, 993
Van91I CCANNNNNTGG 1 cut(s) 2084
VpaK11BI GGWCC 6 cut(s) 70, 938, 948, 1163, 1475, 1868
XapI RAATTY 3 cut(s) 294, 1236, 1352
XspI CTAG 2 cut(s) 675, 1218
Zsp2I ATGCAT 1 cut(s) 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.