Rw2G046450

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012463
Physical Location & Seq
Reverse (-)
73697196 .. 73700104
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046450.1

Sequence Viewer

Length: 2121 bp
ATGGTAGGGTTCACCCCTGAAGTAGACCTCGATCAAGCTTCAAAGCTCAAGCTTTCAAAGGACCCACCTGACGCCGTTGATCCCAGACCCATCGACTTGTCCTTTGTAGATTCCTTGTTGGATTTTGACTCCATTGAGACTTGGTTCAGGGATTTTCCAAACCCAGATATGGCCGAGGCCGGGACGACGACTGTGGTGAAATCCGAGCCAATTGACTGTGAGCCTGGTTCTGTGGTGAAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCCGAACCAATTGATTGTGGGCTTGGTGGTGTGGTGAACGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAGGAAGGGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGGAGTGGGTGAGGATTTGGAGACCAAAATCGAAGGTGTGGAGGGCAAAATGGAGAGTGGGATTGAGAGCGAAAGTTCGGAGTCGGAGAGTGAGAGTGAGAGTTCATCAGCAGCAGCATCTTCTTCGAGTAGTAGCTCTAGTGATGAGGAGGAGGAGGAGAGGGAGAGTGATGATATGGATGAGGAGAAGGATGGAGAAGGGAATGTGAAGGCGGAGGCGGAGAAGGAGGGCAATGAGGAGGCTTGTGAACTTGAAGAAGGTGAGATAAGTGGTGCAGAGCAGATTGGTAATGGAAGTGGTGATGAGGATGATGAGGAGGGCGCCGAGGTTGCGTGGAGTGATGTTGATATTTTCGATGAGGGAGACGAGGAAGAGGAAGCTATAAAAGGTCCCATTCGTTCCAAAAATGAGCTCGAGGAACTTCCACCAGTTCCTCCAGTTAATGTGACCTTGGAACCACATCATCAAATGCTTCCTGTCGGAGTTGTTTTATCGGTTGTTGGTACCAAAGTCATTGTAGAAGGGGTTGAGAAGCACAACCCTCTGAACGAGGGTTCTATTCTGTGGATAACTGAAAGCAGGTCTCCGTTGGGACTGGTAGATGAAATTTTTGGACCTGTCATAAACCCTTACTATATGTTGAGATACAATACAGAAAGTGAAATCCCTGCCGGTATAGAAGTTGGAACACCAATCTCTTTTGTTCAGGAGTTTGCAGATCATGTGCTCAATAACAAAGATCTTTACAGAAAGGGTTATGATGCATCTGGTGCAAATGATGAAGAGAGACTGCAAAAAATGACAAAGAGGGGAATGAATGACCAGAATGCCGGCAGTAAGAAAAACAACAGAAAAAGAGGTAAAAATAAGATGGGTCCCTGGAAAAATGGTCAATCTTCACCCCAGCAAACACCTCCCAATCAACACCACCAGCATCTCTCTTCAGCTGCACCTGCTCGTCGTTATGGTCCATCTTCTTCTGCAGTCTCACAAGGTTTGGTTAGTGGGTGTGGATCAGTTCGACCATTTCCAGGTGCTACACAGGCCACTGGTATGAACACAAATGGGGTTTGGTCAAATGGAATGCCGTGCCAGCCACAGCAAACACCCTTCCCTAATGCATTTCCAAATAATAATATGCCATTTTTTCCACAGTACTCTCATCAGATGTCTATGCCGGGCGGAATTCCATTCCATCAGCAGACAAATGTATTTTCTGGACCCATGGGTTCACAAGGGATGATGGGTCAACTTGGCTTCCACCAACCAGCATTTGGAGTAGGTTTCCAGGGACAACCTACACCAGGTCACCAGTTGAATTCCTTTCCAGGACCCATGAATGCATTTGGGATGATTCAACATGGGTTCAACCAAAATGCATTTGGGATGGGTCAACAGGGATTCAACCCAAATGTTTTTGGGGTAGGTCAACAGGGTCAACATGGCTTCAACCCAAATGCGTTTGCGATGGTTCAACAGGGTCAGCATGGCTTCAACCAAAATACATTCGGGATAGGCTCACAGGGTCAACCTACAAACCTAAGCTTAGAACAGAATATACCACAACCTGGGAACCCGGTTGTAGGTGATGCTGACGCTCCCCAACAATTTAGTCGAAGTACATCTGCTAATCGTGGAAGAAGACCATTTCGTCGAGGGGGTCGTCAGGGAAGAGGAAGAGGTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

706

Amino Acids

75.64

Weight (kDa)

4.57

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 301 - 382 4.5e-16 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1390
AasI GACNNNNNNGTC 1 cut(s) 2079
Acc36I ACCTGC 2 cut(s) 999, 1390
Acc65I GGTACC 1 cut(s) 932
AccB1I GGYRCC 2 cut(s) 749, 932
AccB7I CCANNNNNTGG 2 cut(s) 1703, 1997
AccI GTMKAC 1 cut(s) 24
AciI CCGC 3 cut(s) 641, 647, 1611
AclWI GGATC 2 cut(s) 74, 1450
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 4 cut(s) 343, 1035, 1614, 1747
AcuI CTGAAG 3 cut(s) 39, 351, 1356
AcyI GRCGYC 2 cut(s) 72, 750
AfaI GTAC 3 cut(s) 934, 1586, 2050
AfiI CCNNNNNNNGG 7 cut(s) 169, 180, 1460, 1703, 1733, 1997, 2012
AjnI CCWGG 7 cut(s) 223, 1307, 1459, 1716, 1732, 1756, 1996
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 8 cut(s) 38, 46, 52, 564, 809, 841, 1376, 1974
AluI AGCT 8 cut(s) 38, 46, 52, 564, 809, 841, 1376, 1974
Alw21I GWGCWC 2 cut(s) 843, 1158
Alw26I GTCTC 6 cut(s) 131, 443, 786, 1017, 1210, 1420
AlwI GGATC 2 cut(s) 74, 1450
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 4 cut(s) 171, 177, 265, 1473
ApeKI GCWGC 3 cut(s) 539, 542, 1376
ApoI RAATTY 4 cut(s) 343, 1035, 1614, 1747
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 2110
Asp718I GGTACC 1 cut(s) 932
AspLEI GCGC 1 cut(s) 752
AspS9I GGNCC 8 cut(s) 61, 282, 818, 1043, 1304, 1397, 1649, 1760
AsuC2I CCSGG 3 cut(s) 181, 1608, 2006
AvaI CYCGRG 1 cut(s) 842
AvaII GGWCC 8 cut(s) 61, 282, 818, 1043, 1304, 1397, 1649, 1760
BaeI ACNNNNGTAYC 2 cut(s) 924, 957
BanI GGYRCC 2 cut(s) 749, 932
BanII GRGCYC 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 2077
Bbv12I GWGCWC 2 cut(s) 843, 1158
BbvI GCAGC 3 cut(s) 551, 554, 1363
BccI CCATC 8 cut(s) 98, 614, 1294, 1408, 1632, 1666, 1810, 1891
BceAI ACGGC 2 cut(s) 59, 1501
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BciT130I CCWGG 7 cut(s) 225, 1309, 1461, 1718, 1734, 1758, 1998
BcnI CCSGG 3 cut(s) 181, 1608, 2006
BcoDI GTCTC 6 cut(s) 131, 443, 786, 1017, 1210, 1420
BfaI CTAG 2 cut(s) 567, 2115
BfmI CTRYAG 1 cut(s) 1410
BfoI RGCGCY 1 cut(s) 753
BfuAI ACCTGC 2 cut(s) 999, 1390
BglII AGATCT 1 cut(s) 1168
BisI GCNGC 3 cut(s) 540, 543, 1377
BlsI GCNGC 3 cut(s) 541, 544, 1378
BmcAI AGTACT 1 cut(s) 1586
Bme18I GGWCC 8 cut(s) 61, 282, 818, 1043, 1304, 1397, 1649, 1760
BmeT110I CYCGRG 1 cut(s) 842
BmgT120I GGNCC 8 cut(s) 61, 282, 818, 1043, 1304, 1397, 1649, 1760
BmsI GCATC 5 cut(s) 554, 1180, 1202, 1372, 2008
BpiI GAAGAC 1 cut(s) 2077
BpmI CTGGAG 1 cut(s) 849
Bpu10I CCTNAGC 1 cut(s) 1970
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 3 cut(s) 181, 1608, 2006
BsaHI GRCGYC 2 cut(s) 72, 750
BsaI GGTCTC 2 cut(s) 443, 1017
BsaJI CCNNGG 7 cut(s) 174, 753, 879, 1307, 1653, 1717, 1997
Bsc4I CCNNNNNNNGG 7 cut(s) 169, 180, 1460, 1703, 1733, 1997, 2012
Bse118I RCCGGY 2 cut(s) 1100, 1259
Bse1I ACTGG 5 cut(s) 857, 866, 1029, 1483, 1741
Bse3DI GCAATG 1 cut(s) 667
BseBI CCWGG 7 cut(s) 225, 1309, 1461, 1718, 1734, 1758, 1998
BseDI CCNNGG 7 cut(s) 174, 753, 879, 1307, 1653, 1717, 1997
BseGI GGATG 6 cut(s) 613, 625, 742, 1674, 1785, 1821
BseLI CCNNNNNNNGG 7 cut(s) 169, 180, 1460, 1703, 1733, 1997, 2012
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 5 cut(s) 857, 866, 1029, 1483, 1741
BseRI GAGGAG 8 cut(s) 364, 590, 593, 596, 599, 626, 680, 758
BseXI GCAGC 3 cut(s) 551, 554, 1363
BseYI CCCAGC 1 cut(s) 1332
BsgI GTGCAG 2 cut(s) 723, 1362
BshFI GGCC 4 cut(s) 173, 179, 267, 1475
BshNI GGYRCC 2 cut(s) 749, 932
BsiHKAI GWGCWC 2 cut(s) 843, 1158
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 5 cut(s) 180, 1101, 1260, 1607, 2006
BslFI GGGAC 5 cut(s) 196, 804, 1035, 1290, 1734
BslI CCNNNNNNNGG 7 cut(s) 169, 180, 1460, 1703, 1733, 1997, 2012
BsmAI GTCTC 6 cut(s) 131, 443, 786, 1017, 1210, 1420
BsmBI CGTCTC 1 cut(s) 786
BsmFI GGGAC 5 cut(s) 196, 804, 1035, 1290, 1734
BsmI GAATGC 3 cut(s) 1261, 1518, 1774
BsnI GGCC 4 cut(s) 173, 179, 267, 1475
Bso31I GGTCTC 2 cut(s) 443, 1017
BsoBI CYCGRG 1 cut(s) 842
Bsp1286I GDGCHC 2 cut(s) 843, 1158
Bsp143I GATC 5 cut(s) 31, 79, 1147, 1168, 1442
Bsp19I CCATGG 1 cut(s) 1653
BspACI CCGC 3 cut(s) 641, 647, 1611
BspANI GGCC 4 cut(s) 173, 179, 267, 1475
BspCNI CTCAG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 1414
BspMI ACCTGC 2 cut(s) 999, 1390
BspPI GGATC 2 cut(s) 74, 1450
BspT107I GGYRCC 2 cut(s) 749, 932
BspTNI GGTCTC 2 cut(s) 443, 1017
BsrDI GCAATG 1 cut(s) 667
BsrFI RCCGGY 2 cut(s) 1100, 1259
BsrI ACTGG 5 cut(s) 857, 866, 1029, 1483, 1741
BssAI RCCGGY 2 cut(s) 1100, 1259
BssECI CCNNGG 7 cut(s) 174, 753, 879, 1307, 1653, 1717, 1997
BssMI GATC 5 cut(s) 31, 79, 1147, 1168, 1442
BssNI GRCGYC 2 cut(s) 72, 750
BssT1I CCWWGG 2 cut(s) 879, 1653
Bst2UI CCWGG 7 cut(s) 225, 1309, 1461, 1718, 1734, 1758, 1998
Bst4CI ACNGT 3 cut(s) 193, 218, 1584
Bst6I CTCTTC 5 cut(s) 795, 1206, 1375, 2095, 2101
BstACI GRCGYC 2 cut(s) 72, 750
BstAPI GCANNNNNTGC 1 cut(s) 1199
BstC8I GCNNGC 2 cut(s) 1261, 1523
BstDEI CTNAG 3 cut(s) 249, 1970, 1975
BstDSI CCRYGG 1 cut(s) 1653
BstEII GGTNACC 1 cut(s) 1736
BstENI CCTNNNNNAGG 1 cut(s) 1731
BstF5I GGATG 6 cut(s) 613, 625, 742, 1674, 1785, 1821
BstH2I RGCGCY 1 cut(s) 753
BstHHI GCGC 1 cut(s) 752
BstKTI GATC 5 cut(s) 34, 82, 1150, 1171, 1445
BstMAI GTCTC 6 cut(s) 131, 443, 786, 1017, 1210, 1420
BstMBI GATC 5 cut(s) 31, 79, 1147, 1168, 1442
BstMWI GCNNNNNNNGC 5 cut(s) 758, 1199, 1382, 1472, 1522
BstNI CCWGG 7 cut(s) 225, 1309, 1461, 1718, 1734, 1758, 1998
BstPI GGTNACC 1 cut(s) 1736
BstSFI CTRYAG 1 cut(s) 1410
BstV1I GCAGC 3 cut(s) 551, 554, 1363
BstV2I GAAGAC 1 cut(s) 2077
BstX2I RGATCY 1 cut(s) 1168
BstYI RGATCY 1 cut(s) 1168
BsuRI GGCC 4 cut(s) 173, 179, 267, 1475
BtgI CCRYGG 1 cut(s) 1653
BtgZI GCGATG 1 cut(s) 1910
BtsCI GGATG 6 cut(s) 613, 625, 742, 1674, 1785, 1821
BtsIMutI CAGTG 1 cut(s) 1476
BveI ACCTGC 2 cut(s) 999, 1390
Cac8I GCNNGC 2 cut(s) 1261, 1523
CfoI GCGC 1 cut(s) 752
Cfr10I RCCGGY 2 cut(s) 1100, 1259
Cfr13I GGNCC 8 cut(s) 61, 282, 818, 1043, 1304, 1397, 1649, 1760
CseI GACGC 2 cut(s) 80, 2033
CsiI ACCWGGT 1 cut(s) 1732
Csp6I GTAC 3 cut(s) 933, 1585, 2049
CviAII CATG 6 cut(s) 1151, 1654, 1765, 1790, 1871, 1916
CviQI GTAC 3 cut(s) 933, 1585, 2049
DdeI CTNAG 3 cut(s) 249, 1970, 1975
DinI GGCGCC 1 cut(s) 751
DpnI GATC 5 cut(s) 33, 81, 1149, 1170, 1444
DpnII GATC 5 cut(s) 31, 79, 1147, 1168, 1442
DrdI GACNNNNNNGTC 1 cut(s) 2079
DseDI GACNNNNNNGTC 1 cut(s) 2079
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 5 cut(s) 795, 1206, 1375, 2095, 2101
EarI CTCTTC 5 cut(s) 795, 1206, 1375, 2095, 2101
EciI GGCGGA 3 cut(s) 656, 662, 1626
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 2 cut(s) 879, 1653
Eco24I GRGCYC 1 cut(s) 843
Eco31I GGTCTC 2 cut(s) 443, 1017
Eco47I GGWCC 8 cut(s) 61, 282, 818, 1043, 1304, 1397, 1649, 1760
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 3 cut(s) 39, 351, 1356
Eco88I CYCGRG 1 cut(s) 842
Eco91I GGTNACC 1 cut(s) 1736
EcoICRI GAGCTC 1 cut(s) 841
EcoNI CCTNNNNNAGG 1 cut(s) 1731
EcoO109I RGGNCCY 4 cut(s) 61, 818, 1304, 1760
EcoO65I GGTNACC 1 cut(s) 1736
EcoRI GAATTC 2 cut(s) 1614, 1747
EcoRII CCWGG 7 cut(s) 223, 1307, 1459, 1716, 1732, 1756, 1996
EcoT14I CCWWGG 2 cut(s) 879, 1653
EcoT22I ATGCAT 4 cut(s) 1195, 1552, 1774, 1810
EcoT38I GRGCYC 1 cut(s) 843
EgeI GGCGCC 1 cut(s) 751
EheI GGCGCC 1 cut(s) 751
ErhI CCWWGG 2 cut(s) 879, 1653
Esp3I CGTCTC 1 cut(s) 786
FaeI CATG 6 cut(s) 1154, 1657, 1768, 1793, 1874, 1919
FaqI GGGAC 5 cut(s) 196, 804, 1035, 1290, 1734
FatI CATG 6 cut(s) 1150, 1653, 1764, 1789, 1870, 1915
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 540, 543, 1377
FokI GGATG 6 cut(s) 620, 632, 749, 1681, 1792, 1828
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 3 cut(s) 540, 543, 1377
FspBI CTAG 2 cut(s) 567, 2115
GlaI GCGC 1 cut(s) 751
GluI GCNGC 3 cut(s) 540, 543, 1377
GsaI CCCAGC 1 cut(s) 1336
GsuI CTGGAG 1 cut(s) 849
HaeII RGCGCY 1 cut(s) 753
HaeIII GGCC 4 cut(s) 173, 179, 267, 1475
HapII CCGG 5 cut(s) 180, 1101, 1260, 1607, 2006
HgaI GACGC 2 cut(s) 80, 2033
HhaI GCGC 1 cut(s) 752
Hin1I GRCGYC 2 cut(s) 72, 750
Hin1II CATG 6 cut(s) 1154, 1657, 1768, 1793, 1874, 1919
Hin6I GCGC 1 cut(s) 750
HinP1I GCGC 1 cut(s) 750
HincII GTYRAC 5 cut(s) 1679, 1823, 1859, 1868, 1958
HindII GTYRAC 5 cut(s) 1679, 1823, 1859, 1868, 1958
HindIII AAGCTT 3 cut(s) 36, 50, 1972
HinfI GANTC 5 cut(s) 110, 128, 509, 1783, 1830
HpaII CCGG 5 cut(s) 180, 1101, 1260, 1607, 2006
Hpy188III TCNNGA 4 cut(s) 416, 1136, 1647, 1939
Hpy99I CGWCG 3 cut(s) 190, 1392, 2085
HpyCH4III ACNGT 3 cut(s) 193, 218, 1584
HpyCH4IV ACGT 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 5 cut(s) 758, 1199, 1382, 1472, 1522
HpyF3I CTNAG 3 cut(s) 249, 1970, 1975
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 2 cut(s) 72, 750
Hsp92II CATG 6 cut(s) 1154, 1657, 1768, 1793, 1874, 1919
HspAI GCGC 1 cut(s) 750
KasI GGCGCC 1 cut(s) 749
KflI GGGWCCC 1 cut(s) 1304
KpnI GGTACC 1 cut(s) 936
KroI GCCGGC 1 cut(s) 1259
KroNI GCCGGC 1 cut(s) 1261
Kzo9I GATC 5 cut(s) 31, 79, 1147, 1168, 1442
LmnI GCTCC 1 cut(s) 2032
Lsp1109I GCAGC 3 cut(s) 551, 554, 1363
LweI GCATC 5 cut(s) 554, 1180, 1202, 1372, 2008
MabI ACCWGGT 1 cut(s) 1732
MaeI CTAG 2 cut(s) 567, 2115
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 874, 1736
MalI GATC 5 cut(s) 33, 81, 1149, 1170, 1444
MboI GATC 5 cut(s) 31, 79, 1147, 1168, 1442
MfeI CAATTG 2 cut(s) 210, 291
MflI RGATCY 1 cut(s) 1168
MhlI GDGCHC 2 cut(s) 843, 1158
MluCI AATT 7 cut(s) 210, 291, 343, 1035, 1614, 1747, 2036
Mly113I GGCGCC 1 cut(s) 750
MlyI GAGTC 2 cut(s) 122, 518
MmeI TCCRAC 5 cut(s) 99, 370, 492, 889, 1093
Mph1103I ATGCAT 4 cut(s) 1195, 1552, 1774, 1810
MroNI GCCGGC 1 cut(s) 1259
MroXI GAANNNNTTC 1 cut(s) 2110
MseI TTAA 2 cut(s) 276, 870
MslI CAYNNNNRTG 1 cut(s) 1481
MspA1I CMGCKG 1 cut(s) 1376
MspI CCGG 5 cut(s) 180, 1101, 1260, 1607, 2006
MunI CAATTG 2 cut(s) 210, 291
Mva1269I GAATGC 3 cut(s) 1261, 1518, 1774
MvaI CCWGG 7 cut(s) 225, 1309, 1461, 1718, 1734, 1758, 1998
MwoI GCNNNNNNNGC 5 cut(s) 758, 1199, 1382, 1472, 1522
NaeI GCCGGC 1 cut(s) 1261
NarI GGCGCC 1 cut(s) 750
NciI CCSGG 3 cut(s) 181, 1608, 2006
NcoI CCATGG 1 cut(s) 1653
NdeII GATC 5 cut(s) 31, 79, 1147, 1168, 1442
NgoMIV GCCGGC 1 cut(s) 1259
NlaIII CATG 6 cut(s) 1154, 1657, 1768, 1793, 1874, 1919
NmeAIII GCCGAG 2 cut(s) 199, 778
NmuCI GTSAC 2 cut(s) 874, 1736
NsiI ATGCAT 4 cut(s) 1195, 1552, 1774, 1810
PaeR7I CTCGAG 1 cut(s) 842
PaqCI CACCTGC 1 cut(s) 1390
PcsI WCGNNNNNNNCGW 1 cut(s) 2089
PctI GAATGC 3 cut(s) 1261, 1518, 1774
PdiI GCCGGC 1 cut(s) 1261
PdmI GAANNNNTTC 1 cut(s) 2110
PfeI GAWTC 3 cut(s) 110, 1783, 1830
PflMI CCANNNNNTGG 2 cut(s) 1703, 1997
PfoI TCCNGGA 1 cut(s) 1756
PkrI GCNGC 3 cut(s) 541, 544, 1378
PleI GAGTC 2 cut(s) 122, 517
PluTI GGCGCC 1 cut(s) 753
PpsI GAGTC 2 cut(s) 122, 517
PpuMI RGGWCCY 4 cut(s) 61, 818, 1304, 1760
Psp124BI GAGCTC 1 cut(s) 843
Psp5II RGGWCCY 4 cut(s) 61, 818, 1304, 1760
Psp6I CCWGG 7 cut(s) 223, 1307, 1459, 1716, 1732, 1756, 1996
PspEI GGTNACC 1 cut(s) 1736
PspFI CCCAGC 1 cut(s) 1332
PspGI CCWGG 7 cut(s) 223, 1307, 1459, 1716, 1732, 1756, 1996
PspPI GGNCC 8 cut(s) 61, 282, 818, 1043, 1304, 1397, 1649, 1760
PspPPI RGGWCCY 4 cut(s) 61, 818, 1304, 1760
PspXI VCTCGAGB 1 cut(s) 842
PsrI GAACNNNNNNTAC 2 cut(s) 1971, 2003
PstI CTGCAG 1 cut(s) 1414
PsuI RGATCY 1 cut(s) 1168
PvuII CAGCTG 1 cut(s) 1376
RsaI GTAC 3 cut(s) 934, 1586, 2050
RsaNI GTAC 3 cut(s) 933, 1585, 2049
RseI CAYNNNNRTG 1 cut(s) 1481
SacI GAGCTC 1 cut(s) 843
SaqAI TTAA 2 cut(s) 276, 870
SatI GCNGC 3 cut(s) 540, 543, 1377
Sau3AI GATC 5 cut(s) 31, 79, 1147, 1168, 1442
Sau96I GGNCC 8 cut(s) 61, 282, 818, 1043, 1304, 1397, 1649, 1760
ScaI AGTACT 1 cut(s) 1586
SchI GAGTC 2 cut(s) 122, 518
SduI GDGCHC 2 cut(s) 843, 1158
SexAI ACCWGGT 1 cut(s) 1732
SfaNI GCATC 5 cut(s) 554, 1180, 1202, 1372, 2008
SfcI CTRYAG 1 cut(s) 1410
SfoI GGCGCC 1 cut(s) 751
Sfr274I CTCGAG 1 cut(s) 842
SinI GGWCC 8 cut(s) 61, 282, 818, 1043, 1304, 1397, 1649, 1760
SlaI CTCGAG 1 cut(s) 842
SmiMI CAYNNNNRTG 1 cut(s) 1481
SmlI CTYRAG 2 cut(s) 47, 842
SmoI CTYRAG 2 cut(s) 47, 842
Sse9I AATT 7 cut(s) 210, 291, 343, 1035, 1614, 1747, 2036
SsiI CCGC 3 cut(s) 641, 647, 1611
SspDI GGCGCC 1 cut(s) 749
SspMI CTAG 2 cut(s) 567, 2115
SstI GAGCTC 1 cut(s) 843
StyI CCWWGG 2 cut(s) 879, 1653
TaaI ACNGT 3 cut(s) 193, 218, 1584
TaiI ACGT 1 cut(s) 324
TaqI TCGA 9 cut(s) 30, 93, 459, 554, 783, 843, 1450, 2044, 2083
TasI AATT 7 cut(s) 210, 291, 343, 1035, 1614, 1747, 2036
TatI WGTACW 2 cut(s) 1584, 2048
TfiI GAWTC 3 cut(s) 110, 1783, 1830
Tru1I TTAA 2 cut(s) 276, 870
Tru9I TTAA 2 cut(s) 276, 870
TscAI CASTG 1 cut(s) 1483
TseFI GTSAC 2 cut(s) 874, 1736
TseI GCWGC 3 cut(s) 539, 542, 1376
Tsp45I GTSAC 2 cut(s) 874, 1736
TspDTI ATGAA 7 cut(s) 414, 522, 1047, 1224, 1259, 1499, 1781
TspGWI ACGGA 1 cut(s) 1005
TspRI CASTG 1 cut(s) 1483
Van91I CCANNNNNTGG 2 cut(s) 1703, 1997
VpaK11BI GGWCC 8 cut(s) 61, 282, 818, 1043, 1304, 1397, 1649, 1760
XagI CCTNNNNNAGG 1 cut(s) 1731
XapI RAATTY 4 cut(s) 343, 1035, 1614, 1747
XcmI CCANNNNNNNNNTGG 3 cut(s) 275, 1700, 1808
XhoI CTCGAG 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 2110
XspI CTAG 2 cut(s) 567, 2115
ZrmI AGTACT 1 cut(s) 1586
Zsp2I ATGCAT 4 cut(s) 1195, 1552, 1774, 1810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.