MD09G1092000.v1.1

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012463
Physical Location & Seq
Forward (+)
6726324 .. 6729723
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1092000.v1.1.491

Sequence Viewer

Length: 2229 bp
ATGGTAGGGCTCATCCCTCAGCTAACACTCGAAGACCTCGAACGAGCTTCAAAGCCCAAGAATTTAAAGGACCCGCCCGATCCCGTTGATCCCCGAGACTTGTCGGTTGCAGATTCGTTCTTGGATTTTGATTCCATAGAGGATTGGTTCAAGAATATTCCGAGTTCTGATATGGCCGAAACAGGGCAGGTTAAGGCTGATGCTGTTGAAGCAGAGTATCTTGGAGGTGGGTTAGAGCCGGCAGGTGGTGGATCTGTGCCGATTGATTTTGGGTCTGGTTGTGTGGTGAAGTTGGAGGGTCAACTGTTGGAGAATTCGGGTTGTTCGATTGCGGAAGAGTTGGGAAAGGTTAATTTGCTTGGAGGGTGTGAAGAAAGTTCGGTTCTTGATGGTCGGAATGGTGTGAAGAGTGAAATAGTGACGCGTGATATCGTGGAAATGGAACCGGTGAGTAATGAGAATGAGAGTGAGGTTTCAAAGTCGAAGTTCGAAGGCGAAACTAGGGTGGGGAGTGAAATGGTGAGTGGGAATGGTGGGAAGAGTGGAGCAGGGAATAGTGAGTCCGAGAGTGAAAGCTCGGAGTCTGAGAGTGAGAGTTCGGAGTCATCATCATCGTCGTCTGAGAGTGGTAGCTCTAGTGATGATGACAGCAGTGATGATGATGAAAAGGAAAACAGGAAAGGGGAAATGAATGTGGAGGTGGAGGAGAGCGACGAGGGTGGTGAAATGGAAGAAGGTGAGATAAGGGATGCTGATGGAGGGGAGAAGGAAGATACGACATTCGATAAAGATAATGAAATTGTTGATGATGAAGATGAAGATGAATTGGTTGCTTGGACCGATGCTGAAACTTTTGATGAGGGAGACGGCGATGAGGATGATCTTGGAGATCTGAAAGGACCCATTAGGTCCAAGAATGAGCTTGAGGTGCTTCCCCCAATTCCTCCAGTGGAGGTGACCTTGCAACCACATCATCAGACGCAACCTGTGGGAGTTGTCTTATCGGTTCTTGGTACCCAAGTCATTGTAGAAGGGGTCAAGAAGCACAACCCTCTAAACGAGGGTTCAATTTTGTGGATAACCGAAAGCAGATCTCCGTTGGGATTGATAGATGAAATCTTTGGACCTGTGATACAGCCTTATTATGTGGTGCGATACAATTCAGAAAGTGAAATCCCTAGTGGAATACAAGCGGGCACTTTGATCTCTTTTGTTCCGGAGTTTGCAGATCATGTGCTGAATAACAAGGATGTTTACAAAAAGGGTTATGATGCATCTGGTGCAAATGATGAAGAGATATCTGATGAGGCAGAATTTTCAGATGATGAGAAAGAGGCTGAATACAGGAGGATGCAAAAAATGTCAAAGAGGGGAATGAGTAACCAAAATGCTGGCAACAAGAAATACAACAGAAAGAAGGGTAAAAATAAGCCGGGACCTTGGAATAGTGGTCAACCTTCACCCCAGAAAGCACCAACGGATGCAGGTCAGCAGCCTCCCAATCAACACCATCTTCATTTCTCTCCAGCTGCACCATCTTCTTCTGCAGTATCACAAGGATTGGCTAGTGGGACTGGATCAGTTCCACCATTTCCAGCTCCTACACCGCCTGCTCGTATCAACGCAACTTCAAATGGACTGTGGACAAATGGAACGTCGTTTCAACCACAAAATACATCCTTCCCTAACGGAGTTATAAATAATGGTTTGCCATGTCTTCCACAGTATAATCCTCAATATTCGTATCAAATGTCTATTCCAAACAGAATGCCGTTCTATCAGCAGGCTGGTGTTGTCCTACCAGGTCAACAGTTGAACGCCTTTACAGGACCTGCATATTCACAAGGGATGGTGGGTCAACACGGCTTCAATCAGGCAGCATTTGGGATCGGTTTACAGGGCCAACCCATTCCAGGCCAACAATTCAATGCCTTTGCAGGACCTATGTATCCACAGGGGCTGGTGGGTCAACTTGGTTTCAACCAAAACGCATTCGGGATGGGATTACAGGGCCAACCTACTCACCCGATGTTCAATGCAGAACAAGGAATGCCGTCAAACGGATTACGTGCCGAACAGAACCAGAATATGCCACTACCTGTTGCAAATGCAGGCAACTTGGACAGCCAGCAATTTAGTCGGGGCGCATCTTCTAATCGTGGAAGGAGACCCTCCCATCGAGGGGGTCGTCATTTTGGAAGGGGAAGAGGTAGGCAGCAATCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

743

Amino Acids

79.67

Weight (kDa)

4.48

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 328 - 408 2.5e-16 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1697
AarI CACCTGC 1 cut(s) 233
Acc36I ACCTGC 4 cut(s) 178, 233, 1475, 1840
Acc65I GGTACC 1 cut(s) 1013
AccB1I GGYRCC 1 cut(s) 1013
AccII CGCG 1 cut(s) 424
AccIII TCCGGA 1 cut(s) 1216
AciI CCGC 4 cut(s) 74, 332, 1193, 1607
AclWI GGATC 5 cut(s) 74, 83, 259, 1585, 1895
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 3 cut(s) 61, 313, 1313
AfaI GTAC 1 cut(s) 1015
AfiI CCNNNNNNNGG 6 cut(s) 183, 245, 1913, 2060, 2181, 2182
AflIII ACRYGT 1 cut(s) 422
AgeI ACCGGT 1 cut(s) 445
AjnI CCWGG 2 cut(s) 1801, 1912
AluBI AGCT 7 cut(s) 22, 47, 576, 633, 922, 1529, 1598
AluI AGCT 7 cut(s) 22, 47, 576, 633, 922, 1529, 1598
Alw26I GTCTC 3 cut(s) 90, 858, 2161
AlwI GGATC 5 cut(s) 74, 83, 259, 1585, 1895
AlwNI CAGNNNCTG 2 cut(s) 1832, 1960
Ama87I CYCGRG 1 cut(s) 93
Aor13HI TCCGGA 1 cut(s) 1216
AoxI GGCC 4 cut(s) 174, 1900, 1915, 2011
ApeKI GCWGC 4 cut(s) 1492, 1529, 1877, 2215
ApoI RAATTY 3 cut(s) 61, 313, 1313
ArsI GACNNNNNNTTYG 2 cut(s) 1640, 1672
AsiGI ACCGGT 1 cut(s) 445
Asp718I GGTACC 1 cut(s) 1013
AspLEI GCGC 1 cut(s) 2147
AsuC2I CCSGG 1 cut(s) 1434
AsuHPI GGTGA 8 cut(s) 298, 460, 532, 734, 749, 967, 1452, 2015
AsuII TTCGAA 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 8 cut(s) 70, 837, 899, 909, 1124, 1436, 1829, 1940
BaeGI GKGCMC 1 cut(s) 1199
BaeI ACNNNNGTAYC 4 cut(s) 1005, 1038, 1931, 1964
BanI GGYRCC 1 cut(s) 1013
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 2 cut(s) 39, 1709
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 1504, 1516, 1889
BccI CCATC 7 cut(s) 383, 749, 1518, 1543, 1843, 1993, 2184
BceAI ACGGC 4 cut(s) 883, 1756, 1879, 2038
BcgI CGANNNNNNTGC 2 cut(s) 2120, 2154
BciT130I CCWGG 2 cut(s) 1803, 1914
BciVI GTATCC 1 cut(s) 1959
BcnI CCSGG 1 cut(s) 1434
BcoDI GTCTC 3 cut(s) 90, 858, 2161
BfaI CTAG 4 cut(s) 501, 636, 1179, 1566
BfmI CTRYAG 1 cut(s) 1545
BfuAI ACCTGC 4 cut(s) 178, 233, 1475, 1840
BfuI GTATCC 1 cut(s) 1959
BglII AGATCT 2 cut(s) 889, 1091
BisI GCNGC 4 cut(s) 1493, 1530, 1878, 2216
BlsI GCNGC 4 cut(s) 1494, 1531, 1879, 2217
Bme1390I CCNGG 3 cut(s) 1434, 1803, 1914
Bme18I GGWCC 8 cut(s) 70, 837, 899, 909, 1124, 1436, 1829, 1940
BmeT110I CYCGRG 1 cut(s) 93
BmiI GGNNCC 5 cut(s) 72, 444, 901, 1015, 1437
BmrFI CCNGG 3 cut(s) 1434, 1803, 1914
BmsI GCATC 8 cut(s) 190, 739, 832, 1261, 1283, 1341, 1471, 2156
BpiI GAAGAC 2 cut(s) 39, 1709
BpmI CTGGAG 2 cut(s) 930, 1509
Bpu10I CCTNAGC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 944
BpuMI CCSGG 1 cut(s) 1434
BsaAI YACGTR 1 cut(s) 2069
BsaI GGTCTC 1 cut(s) 2161
BsaJI CCNNGG 1 cut(s) 1439
BsaWI WCCGGW 2 cut(s) 445, 1216
Bsc4I CCNNNNNNNGG 6 cut(s) 183, 245, 1913, 2060, 2181, 2182
Bse118I RCCGGY 2 cut(s) 238, 445
Bse1I ACTGG 2 cut(s) 947, 1579
BseAI TCCGGA 1 cut(s) 1216
BseBI CCWGG 2 cut(s) 1803, 1914
BseDI CCNNGG 1 cut(s) 1439
BseGI GGATG 9 cut(s) 12, 754, 883, 1255, 1356, 1486, 1676, 1854, 2004
BseLI CCNNNNNNNGG 6 cut(s) 183, 245, 1913, 2060, 2181, 2182
BseMII CTCAG 3 cut(s) 32, 576, 612
BseNI ACTGG 2 cut(s) 947, 1579
BseRI GAGGAG 1 cut(s) 719
BseSI GKGCMC 1 cut(s) 1199
BseXI GCAGC 3 cut(s) 1504, 1516, 1889
BsgI GTGCAG 1 cut(s) 1515
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 4 cut(s) 176, 1902, 1917, 2013
BshNI GGYRCC 1 cut(s) 1013
BshTI ACCGGT 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 4 cut(s) 239, 446, 1217, 1433
BslFI GGGAC 2 cut(s) 1449, 1585
BslI CCNNNNNNNGG 6 cut(s) 183, 245, 1913, 2060, 2181, 2182
BsmAI GTCTC 3 cut(s) 90, 858, 2161
BsmBI CGTCTC 1 cut(s) 858
BsmFI GGGAC 2 cut(s) 1449, 1585
BsmI GAATGC 3 cut(s) 1773, 1991, 2055
BsnI GGCC 4 cut(s) 176, 1902, 1917, 2013
Bso31I GGTCTC 1 cut(s) 2161
BsoBI CYCGRG 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 12, 1199
Bsp13I TCCGGA 1 cut(s) 1216
BspACI CCGC 4 cut(s) 74, 332, 1193, 1607
BspANI GGCC 4 cut(s) 176, 1902, 1917, 2013
BspCNI CTCAG 3 cut(s) 31, 577, 613
BspEI TCCGGA 1 cut(s) 1216
BspFNI CGCG 1 cut(s) 424
BspLI GGNNCC 5 cut(s) 72, 444, 901, 1015, 1437
BspMAI CTGCAG 1 cut(s) 1549
BspMI ACCTGC 4 cut(s) 178, 233, 1475, 1840
BspPI GGATC 5 cut(s) 74, 83, 259, 1585, 1895
BspT104I TTCGAA 1 cut(s) 489
BspT107I GGYRCC 1 cut(s) 1013
BspTNI GGTCTC 1 cut(s) 2161
BsrFI RCCGGY 2 cut(s) 238, 445
BsrI ACTGG 2 cut(s) 947, 1579
BssAI RCCGGY 2 cut(s) 238, 445
BssECI CCNNGG 1 cut(s) 1439
BssT1I CCWWGG 1 cut(s) 1439
Bst2UI CCWGG 2 cut(s) 1803, 1914
Bst4CI ACNGT 4 cut(s) 306, 1641, 1725, 1812
Bst6I CTCTTC 5 cut(s) 330, 401, 533, 1287, 2200
BstAPI GCANNNNNTGC 1 cut(s) 1280
BstBAI YACGTR 1 cut(s) 2069
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 7 cut(s) 240, 1195, 1393, 1611, 1785, 2113, 2129
BstDEI CTNAG 3 cut(s) 18, 585, 621
BstEII GGTNACC 1 cut(s) 955
BstF5I GGATG 9 cut(s) 12, 754, 883, 1255, 1356, 1486, 1676, 1854, 2004
BstFNI CGCG 1 cut(s) 424
BstHHI GCGC 1 cut(s) 2147
BstMAI GTCTC 3 cut(s) 90, 858, 2161
BstMWI GCNNNNNNNGC 3 cut(s) 209, 928, 1280
BstNI CCWGG 2 cut(s) 1803, 1914
BstPI GGTNACC 1 cut(s) 955
BstSCI CCNGG 3 cut(s) 1432, 1801, 1912
BstSFI CTRYAG 1 cut(s) 1545
BstSLI GKGCMC 1 cut(s) 1199
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 3 cut(s) 1504, 1516, 1889
BstV2I GAAGAC 2 cut(s) 39, 1709
BstX2I RGATCY 3 cut(s) 251, 889, 1091
BstXI CCANNNNNNTGG 1 cut(s) 1391
BstYI RGATCY 3 cut(s) 251, 889, 1091
BsuI GTATCC 1 cut(s) 1959
BsuRI GGCC 4 cut(s) 176, 1902, 1917, 2013
BtgZI GCGATG 1 cut(s) 885
BtsCI GGATG 9 cut(s) 12, 754, 883, 1255, 1356, 1486, 1676, 1854, 2004
BtsI GCAGTG 1 cut(s) 658
BtsIMutI CAGTG 2 cut(s) 658, 954
BveI ACCTGC 4 cut(s) 178, 233, 1475, 1840
Cac8I GCNNGC 7 cut(s) 240, 1195, 1393, 1611, 1785, 2113, 2129
CaiI CAGNNNCTG 2 cut(s) 1832, 1960
CfoI GCGC 1 cut(s) 2147
Cfr10I RCCGGY 2 cut(s) 238, 445
CseI GACGC 2 cut(s) 430, 988
CsiI ACCWGGT 1 cut(s) 1801
Csp6I GTAC 1 cut(s) 1014
CspAI ACCGGT 1 cut(s) 445
CviAII CATG 2 cut(s) 1232, 1713
CviQI GTAC 1 cut(s) 1014
DdeI CTNAG 3 cut(s) 18, 585, 621
DraI TTTAAA 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 5 cut(s) 330, 401, 533, 1287, 2200
EarI CTCTTC 5 cut(s) 330, 401, 533, 1287, 2200
Eco130I CCWWGG 1 cut(s) 1439
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 2161
Eco32I GATATC 2 cut(s) 430, 1299
Eco47I GGWCC 8 cut(s) 70, 837, 899, 909, 1124, 1436, 1829, 1940
Eco88I CYCGRG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 955
EcoO109I RGGNCCY 5 cut(s) 70, 899, 1436, 1829, 1940
EcoO65I GGTNACC 1 cut(s) 955
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 1801, 1912
EcoRV GATATC 2 cut(s) 430, 1299
EcoT14I CCWWGG 1 cut(s) 1439
EcoT22I ATGCAT 1 cut(s) 1276
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 1439
Esp3I CGTCTC 1 cut(s) 858
FaeI CATG 2 cut(s) 1235, 1716
FaqI GGGAC 2 cut(s) 1449, 1585
FatI CATG 2 cut(s) 1231, 1712
FauI CCCGC 2 cut(s) 81, 1186
Fnu4HI GCNGC 4 cut(s) 1493, 1530, 1878, 2216
FokI GGATG 8 cut(s) 761, 890, 1262, 1363, 1493, 1663, 1861, 2011
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 4 cut(s) 1493, 1530, 1878, 2216
FspBI CTAG 4 cut(s) 501, 636, 1179, 1566
GlaI GCGC 1 cut(s) 2146
GluI GCNGC 4 cut(s) 1493, 1530, 1878, 2216
GsuI CTGGAG 2 cut(s) 930, 1509
HaeIII GGCC 4 cut(s) 176, 1902, 1917, 2013
HapII CCGG 4 cut(s) 239, 446, 1217, 1433
HgaI GACGC 2 cut(s) 430, 988
HhaI GCGC 1 cut(s) 2147
Hin1II CATG 2 cut(s) 1235, 1716
Hin6I GCGC 1 cut(s) 2145
HinP1I GCGC 1 cut(s) 2145
HincII GTYRAC 5 cut(s) 302, 1454, 1808, 1859, 1970
HindII GTYRAC 5 cut(s) 302, 1454, 1808, 1859, 1970
HinfI GANTC 5 cut(s) 113, 131, 560, 581, 602
HpaII CCGG 4 cut(s) 239, 446, 1217, 1433
HphI GGTGA 8 cut(s) 298, 460, 532, 734, 749, 967, 1452, 2015
Hpy166II GTNNAC 8 cut(s) 302, 1255, 1454, 1644, 1808, 1859, 1895, 1970
Hpy188III TCNNGA 5 cut(s) 151, 386, 1039, 1217, 1996
Hpy8I GTNNAC 8 cut(s) 302, 1255, 1454, 1644, 1808, 1859, 1895, 1970
Hpy99I CGWCG 3 cut(s) 619, 716, 1660
HpyAV CCTTC 9 cut(s) 485, 728, 760, 1025, 1411, 1467, 1690, 2157, 2193
HpyCH4III ACNGT 4 cut(s) 306, 1641, 1725, 1812
HpyCH4IV ACGT 2 cut(s) 1655, 2068
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 928, 1280
HpyF3I CTNAG 3 cut(s) 18, 585, 621
HpySE526I ACGT 2 cut(s) 1655, 2068
Hsp92II CATG 2 cut(s) 1235, 1716
HspAI GCGC 1 cut(s) 2145
Kpn2I TCCGGA 1 cut(s) 1216
KpnI GGTACC 1 cut(s) 1017
KroI GCCGGC 1 cut(s) 238
KroNI GCCGGC 1 cut(s) 240
LmnI GCTCC 2 cut(s) 545, 1603
Lsp1109I GCAGC 3 cut(s) 1504, 1516, 1889
LweI GCATC 8 cut(s) 190, 739, 832, 1261, 1283, 1341, 1471, 2156
MabI ACCWGGT 1 cut(s) 1801
MaeI CTAG 4 cut(s) 501, 636, 1179, 1566
MaeII ACGT 2 cut(s) 1655, 2068
MaeIII GTNAC 3 cut(s) 418, 955, 1379
MflI RGATCY 3 cut(s) 251, 889, 1091
MhlI GDGCHC 2 cut(s) 12, 1199
MluI ACGCGT 1 cut(s) 422
MlyI GAGTC 3 cut(s) 569, 590, 611
MmeI TCCRAC 3 cut(s) 273, 288, 374
Mph1103I ATGCAT 1 cut(s) 1276
MroI TCCGGA 1 cut(s) 1216
MroNI GCCGGC 1 cut(s) 238
MseI TTAA 3 cut(s) 65, 192, 351
MspA1I CMGCKG 1 cut(s) 1529
MspI CCGG 4 cut(s) 239, 446, 1217, 1433
MspR9I CCNGG 3 cut(s) 1434, 1803, 1914
Mva1269I GAATGC 3 cut(s) 1773, 1991, 2055
MvaI CCWGG 2 cut(s) 1803, 1914
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 3 cut(s) 209, 928, 1280
NaeI GCCGGC 1 cut(s) 240
NciI CCSGG 1 cut(s) 1434
NgoMIV GCCGGC 1 cut(s) 238
NlaIII CATG 2 cut(s) 1235, 1716
NlaIV GGNNCC 5 cut(s) 72, 444, 901, 1015, 1437
NmuCI GTSAC 2 cut(s) 418, 955
NsiI ATGCAT 1 cut(s) 1276
NspV TTCGAA 1 cut(s) 489
PaqCI CACCTGC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 3 cut(s) 36, 323, 2185
PctI GAATGC 3 cut(s) 1773, 1991, 2055
PdiI GCCGGC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 113, 131
PinAI ACCGGT 1 cut(s) 445
PkrI GCNGC 4 cut(s) 1494, 1531, 1879, 2217
PleI GAGTC 3 cut(s) 568, 589, 610
PpsI GAGTC 3 cut(s) 568, 589, 610
Ppu21I YACGTR 1 cut(s) 2069
PpuMI RGGWCCY 5 cut(s) 70, 899, 1436, 1829, 1940
PsiI TTATAA 1 cut(s) 1697
Psp5II RGGWCCY 5 cut(s) 70, 899, 1436, 1829, 1940
Psp6I CCWGG 2 cut(s) 1801, 1912
PspEI GGTNACC 1 cut(s) 955
PspGI CCWGG 2 cut(s) 1801, 1912
PspN4I GGNNCC 5 cut(s) 72, 444, 901, 1015, 1437
PspPPI RGGWCCY 5 cut(s) 70, 899, 1436, 1829, 1940
PstI CTGCAG 1 cut(s) 1549
PstNI CAGNNNCTG 2 cut(s) 1832, 1960
PsuI RGATCY 3 cut(s) 251, 889, 1091
PvuII CAGCTG 1 cut(s) 1529
RsaI GTAC 1 cut(s) 1015
RsaNI GTAC 1 cut(s) 1014
SaqAI TTAA 3 cut(s) 65, 192, 351
SatI GCNGC 4 cut(s) 1493, 1530, 1878, 2216
SchI GAGTC 3 cut(s) 569, 590, 611
ScrFI CCNGG 3 cut(s) 1434, 1803, 1914
SduI GDGCHC 2 cut(s) 12, 1199
SexAI ACCWGGT 1 cut(s) 1801
SfaNI GCATC 8 cut(s) 190, 739, 832, 1261, 1283, 1341, 1471, 2156
SfcI CTRYAG 1 cut(s) 1545
SfuI TTCGAA 1 cut(s) 489
SinI GGWCC 8 cut(s) 70, 837, 899, 909, 1124, 1436, 1829, 1940
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
SsiI CCGC 4 cut(s) 74, 332, 1193, 1607
SspI AATATT 2 cut(s) 157, 1739
SspMI CTAG 4 cut(s) 501, 636, 1179, 1566
StyD4I CCNGG 3 cut(s) 1432, 1801, 1912
StyI CCWWGG 1 cut(s) 1439
TaaI ACNGT 4 cut(s) 306, 1641, 1725, 1812
TaiI ACGT 2 cut(s) 1658, 2071
TaqI TCGA 8 cut(s) 30, 39, 326, 482, 489, 783, 2179, 2222
TaqII GACCGA 1 cut(s) 854
TfiI GAWTC 2 cut(s) 113, 131
Tru1I TTAA 3 cut(s) 65, 192, 351
Tru9I TTAA 3 cut(s) 65, 192, 351
TscAI CASTG 2 cut(s) 658, 954
TseFI GTSAC 2 cut(s) 418, 955
TseI GCWGC 4 cut(s) 1492, 1529, 1877, 2215
Tsp45I GTSAC 2 cut(s) 418, 955
TspDTI ATGAA 9 cut(s) 678, 704, 810, 825, 831, 837, 1128, 1305, 1505
TspGWI ACGGA 4 cut(s) 1086, 1493, 1704, 2076
TspRI CASTG 2 cut(s) 658, 954
VpaK11BI GGWCC 8 cut(s) 70, 837, 899, 909, 1124, 1436, 1829, 1940
XapI RAATTY 3 cut(s) 61, 313, 1313
XspI CTAG 4 cut(s) 501, 636, 1179, 1566
Zsp2I ATGCAT 1 cut(s) 1276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.