Rh2BG574100

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012463
Physical Location & Seq
Reverse (-)
79014512 .. 79018217
3706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG574100.1

Sequence Viewer

Length: 2175 bp
ATGGTAGGGTTCACCCCTGAAGTAGACCTCGATCAAGCTTCAAAGCTCAAGCTTTCAAAGGACCCACCTGACGCCGTTGATCCCAGACCCATCGACTTGTCCTTTGTAGATTCCTTGTTGGATTTTGACTCCATTGAGACTTGGTTCAGGGATTTTCCAAACCCAGATATGGCCGAGGCCGGGACGACGACTGTGGTGAAATCCGAGCCAATTGACTCTGAGCCTGGTTCTGTGGTGAAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCCGAACCCATTGATTGTGGGCTTGCTGGTGTGGTGAACGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAGGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAGAGTTTGGTTCTTGATAGTGGGAATGGAGTGGGTGAGGATTTGGAGACCAAAATCGAAGGTGTGGAGGGCAAAATGGAGGGTGGGATTGAGAGCGAAAGTTCGGAGTCGGAGAGTGAGAGTTCATCAGCAGCATCATCTTCTTCGAGTAGTAGCTCTAGTGATGAGGATGAGGAGGAGAGAGAGAGTGATGATATGGATGAGGAGAAGGATGGAGAAGGGAATGTGAAGGCGGAGGTGGAGAAGGAGGGCAATGAGGAGGCTTGTGAACTTGAAGAAGGTGAGATAAGTGGTGCAGAGCAGATAGGTGATGGAAGTGGTGATGAGGATGATGAGGAGGGCGCCGAGGTTGCGTGGAGTGATGTTGATATTTTCGATGAGGGAGACGAGGAAGAGGAAGCTATAAAAGGTCCCATTCGTTCCAAAAATGAGCTCGAGGAACTTCCACCAGTTCCTCCAGTTAATGTGACCTTGGAACCACATCATCAAATGCTTCCTGTCGGAGTTGTTTTATCGGTTGTTGGTACCAAAGTCATTGTAGAAGGGGTTGAGAAGCACAACCCTCTGAACGAGGGTTCTATTCTGTGGATAACTGAAAGCAGGTCTCCGTTGGGACTGATAGATGAAATTTTTGGACCTGTCATAAACCCTTACTATATGGTGAGATACAATACAGAAAGTGAAATCCCTGCCGGTATAGAAGTTGGAACACCAATCTCTTTTGTTCAGGAGTTTGCAGATCATGTGCTCAATAACAAAGATCTTTACAGAAAGGGTTATGATGCATCTGGTGCGAATGATGAAGAGGTATCAGATGAAGCAGAATTTTCAGATGATGAAAAAGAAGCTGAATACAAGAGACTGCAAAAAATGACAAAGAGGGGAATGAATGACCAGAATGCCGGCAGTAAGAAAAACAACAGAAAAAGAGGTAAAAATAAGATGGGTCCCTGGAAAAATGGTCAATCTTCACCCCAGCAAACACCTCCCAATCAACACCACGAGCATCTCTCTTCAGCTGCACCTGCTCGTCGTTATGGTCCATCTTCTTCTGCAGTCTCACAAGGTTTGGTTAGTGGGCGTGGATCAGTGCGACCATTTCCAGGTGCTACACAGGCCACTGGTATGAACGCAAATGGGGTTTGGTCAAATGGAATGCCGTGTCAGCCACAGCAAACACCCTTCCCTAATGCATTTCCAAATAATAATATGCCATTTTTTCCACAGTACCCTCATCAGATGTCTATGCCGGGCGGAATTCCATTCCATCAGCAGACAAATGTATTTTCTGGACCCATGGGTTCACAAGGGATGATGGGTCAACTTGGCTTCCACCAACCAGCATTTGGAGTAGGTTTCCAGGGACAACCTACACCAGGTCAACAGTTGAATTCCTTTCCAGGACCCATGAATGCATTTGGGATGAGTCAACAGGGTCAACATGGGTTCAACCAAAATGCATTTGGGATGGGTCAACAGGGATTCAACCCAAATGTTTTTGGGGTAGGTCAACAGGGTCAACATGGCTTCAACCCAAATGCGTTTGCGATGGTTCAACAGGGTCAGCATGGCTTCAACCAAAATACATTCGGGATAGGCTCACAGGGTCAACCTACAAACCTAAGCTTAGAACAGAATATGCCACAACCTGGGAACCCGGTTGTAGGTGATACTGACGCTCCCCAACAATTTAATCGAAGTACATCTGCTAATCGTGGAAGAAGACCATTTCGTCGAGGGGGTCGTCAGGGAAGAGGAAGAGGTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

724

Amino Acids

77.85

Weight (kDa)

4.49

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gar1 PF04410 299 - 380 9.7e-17 Gar1/Naf1 RNA binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03530
fragaria_vesca FvH4_6g44910
malus_domestica MD09G1092000.v1.1 MD17G1081900.v1.1
prunus_persica Prupe.3G233000_v2.0.a1
pyrus_communis pycom09g01750 pycom17g08010
rosa_chinensis RchiOBHm_Chr2g0162091
rosa_laevigata RLG00000021322
rosa_multiflora Rmu_co8199028.1_g000001 Rmu_co8200688.1_g000001 Rmu_sc0004020.1_g000037
rosa_roxburghii Rroxscaffold_2G00088310
rosa_rugosa Rorug02G0494600
rosa_samantha Rh2AG560800 Rh2BG574100 Rh2CG544400 Rh2DG584100
rosa_wichuraiana Rw2G046450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1435
AasI GACNNNNNNGTC 1 cut(s) 2133
Acc36I ACCTGC 2 cut(s) 993, 1435
Acc65I GGTACC 1 cut(s) 926
AccB1I GGYRCC 2 cut(s) 743, 926
AccB7I CCANNNNNTGG 2 cut(s) 1748, 2051
AccI GTMKAC 1 cut(s) 24
AciI CCGC 2 cut(s) 635, 1656
AclWI GGATC 2 cut(s) 74, 1495
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 5 cut(s) 343, 1029, 1226, 1659, 1792
AcuI CTGAAG 3 cut(s) 39, 351, 1401
AcyI GRCGYC 2 cut(s) 72, 744
AfaI GTAC 3 cut(s) 928, 1631, 2104
AfiI CCNNNNNNNGG 7 cut(s) 169, 180, 1505, 1748, 1778, 2051, 2066
AgsI TTSAA 9 cut(s) 42, 57, 677, 1792, 1852, 1888, 1933, 1958, 1978
AjnI CCWGG 7 cut(s) 223, 1352, 1504, 1761, 1777, 1801, 2050
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 9 cut(s) 38, 46, 52, 558, 803, 835, 1250, 1421, 2028
AluI AGCT 9 cut(s) 38, 46, 52, 558, 803, 835, 1250, 1421, 2028
Alw21I GWGCWC 2 cut(s) 837, 1152
Alw26I GTCTC 6 cut(s) 131, 443, 780, 1011, 1255, 1465
AlwI GGATC 2 cut(s) 74, 1495
Ama87I CYCGRG 1 cut(s) 836
AoxI GGCC 4 cut(s) 171, 177, 265, 1518
ApeKI GCWGC 2 cut(s) 533, 1421
ApoI RAATTY 5 cut(s) 343, 1029, 1226, 1659, 1792
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 2164
Asp718I GGTACC 1 cut(s) 926
AspLEI GCGC 1 cut(s) 746
AspS9I GGNCC 8 cut(s) 61, 282, 812, 1037, 1349, 1442, 1694, 1805
AsuC2I CCSGG 3 cut(s) 181, 1653, 2060
AvaI CYCGRG 1 cut(s) 836
AvaII GGWCC 8 cut(s) 61, 282, 812, 1037, 1349, 1442, 1694, 1805
BaeI ACNNNNGTAYC 2 cut(s) 918, 951
BanI GGYRCC 2 cut(s) 743, 926
BanII GRGCYC 1 cut(s) 837
BauI CACGAG 1 cut(s) 1403
BbsI GAAGAC 1 cut(s) 2131
Bbv12I GWGCWC 2 cut(s) 837, 1152
BbvI GCAGC 2 cut(s) 545, 1408
BccI CCATC 9 cut(s) 98, 608, 707, 1339, 1453, 1677, 1711, 1864, 1945
BceAI ACGGC 2 cut(s) 59, 1546
BciT130I CCWGG 7 cut(s) 225, 1354, 1506, 1763, 1779, 1803, 2052
BcnI CCSGG 3 cut(s) 181, 1653, 2060
BcoDI GTCTC 6 cut(s) 131, 443, 780, 1011, 1255, 1465
BfaI CTAG 2 cut(s) 561, 2169
BfmI CTRYAG 1 cut(s) 1455
BfoI RGCGCY 1 cut(s) 747
BfuAI ACCTGC 2 cut(s) 993, 1435
BglII AGATCT 1 cut(s) 1162
BisI GCNGC 2 cut(s) 534, 1422
BlsI GCNGC 2 cut(s) 535, 1423
Bme18I GGWCC 8 cut(s) 61, 282, 812, 1037, 1349, 1442, 1694, 1805
BmeT110I CYCGRG 1 cut(s) 836
BmgT120I GGNCC 8 cut(s) 61, 282, 812, 1037, 1349, 1442, 1694, 1805
BmsI GCATC 4 cut(s) 545, 1174, 1196, 1417
BpiI GAAGAC 1 cut(s) 2131
BplI GAGNNNNNCTC 2 cut(s) 1397, 1429
BpmI CTGGAG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 2024
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 3 cut(s) 181, 1653, 2060
BsaHI GRCGYC 2 cut(s) 72, 744
BsaI GGTCTC 2 cut(s) 443, 1011
BsaJI CCNNGG 7 cut(s) 174, 747, 873, 1352, 1698, 1762, 2051
BsaXI ACNNNNNCTCC 2 cut(s) 2065, 2095
Bsc4I CCNNNNNNNGG 7 cut(s) 169, 180, 1505, 1748, 1778, 2051, 2066
Bse118I RCCGGY 2 cut(s) 1094, 1304
Bse1I ACTGG 3 cut(s) 851, 860, 1528
Bse3DI GCAATG 1 cut(s) 661
BseBI CCWGG 7 cut(s) 225, 1354, 1506, 1763, 1779, 1803, 2052
BseDI CCNNGG 7 cut(s) 174, 747, 873, 1352, 1698, 1762, 2051
BseGI GGATG 7 cut(s) 577, 607, 619, 736, 1719, 1830, 1875
BseLI CCNNNNNNNGG 7 cut(s) 169, 180, 1505, 1748, 1778, 2051, 2066
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 2 cut(s) 210, 240
BseNI ACTGG 3 cut(s) 851, 860, 1528
BseRI GAGGAG 6 cut(s) 364, 590, 593, 620, 674, 752
BseXI GCAGC 2 cut(s) 545, 1408
BseYI CCCAGC 1 cut(s) 1377
BsgI GTGCAG 2 cut(s) 717, 1407
BshFI GGCC 4 cut(s) 173, 179, 267, 1520
BshNI GGYRCC 2 cut(s) 743, 926
BsiHKAI GWGCWC 2 cut(s) 837, 1152
BsiHKCI CYCGRG 1 cut(s) 836
BsiSI CCGG 5 cut(s) 180, 1095, 1305, 1652, 2060
BslFI GGGAC 5 cut(s) 196, 798, 1029, 1335, 1779
BslI CCNNNNNNNGG 7 cut(s) 169, 180, 1505, 1748, 1778, 2051, 2066
BsmAI GTCTC 6 cut(s) 131, 443, 780, 1011, 1255, 1465
BsmBI CGTCTC 1 cut(s) 780
BsmFI GGGAC 5 cut(s) 196, 798, 1029, 1335, 1779
BsmI GAATGC 3 cut(s) 1306, 1563, 1819
BsnI GGCC 4 cut(s) 173, 179, 267, 1520
Bso31I GGTCTC 2 cut(s) 443, 1011
BsoBI CYCGRG 1 cut(s) 836
Bsp1286I GDGCHC 2 cut(s) 837, 1152
Bsp143I GATC 5 cut(s) 31, 79, 1141, 1162, 1487
Bsp19I CCATGG 1 cut(s) 1698
BspACI CCGC 2 cut(s) 635, 1656
BspANI GGCC 4 cut(s) 173, 179, 267, 1520
BspCNI CTCAG 2 cut(s) 211, 241
BspMAI CTGCAG 1 cut(s) 1459
BspMI ACCTGC 2 cut(s) 993, 1435
BspPI GGATC 2 cut(s) 74, 1495
BspT107I GGYRCC 2 cut(s) 743, 926
BspTNI GGTCTC 2 cut(s) 443, 1011
BsrDI GCAATG 1 cut(s) 661
BsrFI RCCGGY 2 cut(s) 1094, 1304
BsrI ACTGG 3 cut(s) 851, 860, 1528
BssAI RCCGGY 2 cut(s) 1094, 1304
BssECI CCNNGG 7 cut(s) 174, 747, 873, 1352, 1698, 1762, 2051
BssMI GATC 5 cut(s) 31, 79, 1141, 1162, 1487
BssNI GRCGYC 2 cut(s) 72, 744
BssSI CACGAG 1 cut(s) 1403
BssT1I CCWWGG 2 cut(s) 873, 1698
Bst2BI CACGAG 1 cut(s) 1403
Bst2UI CCWGG 7 cut(s) 225, 1354, 1506, 1763, 1779, 1803, 2052
Bst4CI ACNGT 3 cut(s) 193, 1629, 1788
Bst6I CTCTTC 7 cut(s) 360, 396, 789, 1200, 1420, 2149, 2155
BstACI GRCGYC 2 cut(s) 72, 744
BstAPI GCANNNNNTGC 1 cut(s) 1193
BstC8I GCNNGC 2 cut(s) 306, 1306
BstDEI CTNAG 4 cut(s) 219, 249, 2024, 2029
BstDSI CCRYGG 1 cut(s) 1698
BstENI CCTNNNNNAGG 1 cut(s) 1776
BstF5I GGATG 7 cut(s) 577, 607, 619, 736, 1719, 1830, 1875
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 1 cut(s) 746
BstKTI GATC 5 cut(s) 34, 82, 1144, 1165, 1490
BstMAI GTCTC 6 cut(s) 131, 443, 780, 1011, 1255, 1465
BstMBI GATC 5 cut(s) 31, 79, 1141, 1162, 1487
BstMWI GCNNNNNNNGC 5 cut(s) 752, 1193, 1427, 1517, 1567
BstNI CCWGG 7 cut(s) 225, 1354, 1506, 1763, 1779, 1803, 2052
BstSFI CTRYAG 1 cut(s) 1455
BstV1I GCAGC 2 cut(s) 545, 1408
BstV2I GAAGAC 1 cut(s) 2131
BstX2I RGATCY 1 cut(s) 1162
BstYI RGATCY 1 cut(s) 1162
BsuRI GGCC 4 cut(s) 173, 179, 267, 1520
BtgI CCRYGG 1 cut(s) 1698
BtgZI GCGATG 1 cut(s) 1964
BtsCI GGATG 7 cut(s) 577, 607, 619, 736, 1719, 1830, 1875
BtsIMutI CAGTG 2 cut(s) 1497, 1521
BveI ACCTGC 2 cut(s) 993, 1435
Cac8I GCNNGC 2 cut(s) 306, 1306
CfoI GCGC 1 cut(s) 746
Cfr10I RCCGGY 2 cut(s) 1094, 1304
Cfr13I GGNCC 8 cut(s) 61, 282, 812, 1037, 1349, 1442, 1694, 1805
CseI GACGC 2 cut(s) 80, 2087
CsiI ACCWGGT 1 cut(s) 1777
Csp6I GTAC 3 cut(s) 927, 1630, 2103
CviAII CATG 6 cut(s) 1145, 1699, 1810, 1844, 1925, 1970
CviQI GTAC 3 cut(s) 927, 1630, 2103
DdeI CTNAG 4 cut(s) 219, 249, 2024, 2029
DinI GGCGCC 1 cut(s) 745
DpnI GATC 5 cut(s) 33, 81, 1143, 1164, 1489
DpnII GATC 5 cut(s) 31, 79, 1141, 1162, 1487
DrdI GACNNNNNNGTC 1 cut(s) 2133
DseDI GACNNNNNNGTC 1 cut(s) 2133
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 7 cut(s) 360, 396, 789, 1200, 1420, 2149, 2155
EarI CTCTTC 7 cut(s) 360, 396, 789, 1200, 1420, 2149, 2155
EciI GGCGGA 2 cut(s) 650, 1671
Ecl136II GAGCTC 1 cut(s) 835
Eco130I CCWWGG 2 cut(s) 873, 1698
Eco24I GRGCYC 1 cut(s) 837
Eco31I GGTCTC 2 cut(s) 443, 1011
Eco47I GGWCC 8 cut(s) 61, 282, 812, 1037, 1349, 1442, 1694, 1805
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 3 cut(s) 39, 351, 1401
Eco88I CYCGRG 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 835
EcoNI CCTNNNNNAGG 1 cut(s) 1776
EcoO109I RGGNCCY 4 cut(s) 61, 812, 1349, 1805
EcoRI GAATTC 2 cut(s) 1659, 1792
EcoRII CCWGG 7 cut(s) 223, 1352, 1504, 1761, 1777, 1801, 2050
EcoT14I CCWWGG 2 cut(s) 873, 1698
EcoT22I ATGCAT 4 cut(s) 1189, 1597, 1819, 1864
EcoT38I GRGCYC 1 cut(s) 837
EgeI GGCGCC 1 cut(s) 745
EheI GGCGCC 1 cut(s) 745
ErhI CCWWGG 2 cut(s) 873, 1698
Esp3I CGTCTC 1 cut(s) 780
FaeI CATG 6 cut(s) 1148, 1702, 1813, 1847, 1928, 1973
FaqI GGGAC 5 cut(s) 196, 798, 1029, 1335, 1779
FatI CATG 6 cut(s) 1144, 1698, 1809, 1843, 1924, 1969
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 534, 1422
FokI GGATG 7 cut(s) 584, 614, 626, 743, 1726, 1837, 1882
FriOI GRGCYC 1 cut(s) 837
Fsp4HI GCNGC 2 cut(s) 534, 1422
FspBI CTAG 2 cut(s) 561, 2169
GlaI GCGC 1 cut(s) 745
GluI GCNGC 2 cut(s) 534, 1422
GsaI CCCAGC 1 cut(s) 1381
GsuI CTGGAG 1 cut(s) 843
HaeII RGCGCY 1 cut(s) 747
HaeIII GGCC 4 cut(s) 173, 179, 267, 1520
HapII CCGG 5 cut(s) 180, 1095, 1305, 1652, 2060
HgaI GACGC 2 cut(s) 80, 2087
HhaI GCGC 1 cut(s) 746
Hin1I GRCGYC 2 cut(s) 72, 744
Hin1II CATG 6 cut(s) 1148, 1702, 1813, 1847, 1928, 1973
Hin6I GCGC 1 cut(s) 744
HinP1I GCGC 1 cut(s) 744
HincII GTYRAC 8 cut(s) 1724, 1784, 1832, 1841, 1877, 1913, 1922, 2012
HindII GTYRAC 8 cut(s) 1724, 1784, 1832, 1841, 1877, 1913, 1922, 2012
HindIII AAGCTT 3 cut(s) 36, 50, 2026
HinfI GANTC 6 cut(s) 110, 128, 215, 509, 1828, 1884
HpaII CCGG 5 cut(s) 180, 1095, 1305, 1652, 2060
Hpy188III TCNNGA 4 cut(s) 416, 1130, 1692, 1993
Hpy99I CGWCG 3 cut(s) 190, 1437, 2139
HpyCH4III ACNGT 3 cut(s) 193, 1629, 1788
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 9 cut(s) 698, 1139, 1187, 1267, 1424, 1457, 1595, 1817, 1862
HpyF10VI GCNNNNNNNGC 5 cut(s) 752, 1193, 1427, 1517, 1567
HpyF3I CTNAG 4 cut(s) 219, 249, 2024, 2029
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 2 cut(s) 72, 744
Hsp92II CATG 6 cut(s) 1148, 1702, 1813, 1847, 1928, 1973
HspAI GCGC 1 cut(s) 744
KasI GGCGCC 1 cut(s) 743
KflI GGGWCCC 1 cut(s) 1349
KpnI GGTACC 1 cut(s) 930
KroI GCCGGC 1 cut(s) 1304
KroNI GCCGGC 1 cut(s) 1306
Kzo9I GATC 5 cut(s) 31, 79, 1141, 1162, 1487
LmnI GCTCC 1 cut(s) 2086
Lsp1109I GCAGC 2 cut(s) 545, 1408
LweI GCATC 4 cut(s) 545, 1174, 1196, 1417
MabI ACCWGGT 1 cut(s) 1777
MaeI CTAG 2 cut(s) 561, 2169
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 868
MalI GATC 5 cut(s) 33, 81, 1143, 1164, 1489
MboI GATC 5 cut(s) 31, 79, 1141, 1162, 1487
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 1162
MhlI GDGCHC 2 cut(s) 837, 1152
MluCI AATT 7 cut(s) 210, 343, 1029, 1226, 1659, 1792, 2090
Mly113I GGCGCC 1 cut(s) 744
MlyI GAGTC 4 cut(s) 122, 209, 518, 1837
MmeI TCCRAC 5 cut(s) 99, 370, 492, 883, 1087
Mph1103I ATGCAT 4 cut(s) 1189, 1597, 1819, 1864
MroNI GCCGGC 1 cut(s) 1304
MroXI GAANNNNTTC 1 cut(s) 2164
MseI TTAA 3 cut(s) 276, 864, 2094
MslI CAYNNNNRTG 1 cut(s) 1526
MspA1I CMGCKG 1 cut(s) 1421
MspI CCGG 5 cut(s) 180, 1095, 1305, 1652, 2060
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 3 cut(s) 1306, 1563, 1819
MvaI CCWGG 7 cut(s) 225, 1354, 1506, 1763, 1779, 1803, 2052
MwoI GCNNNNNNNGC 5 cut(s) 752, 1193, 1427, 1517, 1567
NaeI GCCGGC 1 cut(s) 1306
NarI GGCGCC 1 cut(s) 744
NciI CCSGG 3 cut(s) 181, 1653, 2060
NcoI CCATGG 1 cut(s) 1698
NdeII GATC 5 cut(s) 31, 79, 1141, 1162, 1487
NgoMIV GCCGGC 1 cut(s) 1304
NlaIII CATG 6 cut(s) 1148, 1702, 1813, 1847, 1928, 1973
NmeAIII GCCGAG 2 cut(s) 199, 772
NmuCI GTSAC 1 cut(s) 868
NsiI ATGCAT 4 cut(s) 1189, 1597, 1819, 1864
PaeR7I CTCGAG 1 cut(s) 836
PaqCI CACCTGC 1 cut(s) 1435
PcsI WCGNNNNNNNCGW 1 cut(s) 2143
PctI GAATGC 3 cut(s) 1306, 1563, 1819
PdiI GCCGGC 1 cut(s) 1306
PdmI GAANNNNTTC 1 cut(s) 2164
PfeI GAWTC 2 cut(s) 110, 1884
PflMI CCANNNNNTGG 2 cut(s) 1748, 2051
PfoI TCCNGGA 1 cut(s) 1801
PkrI GCNGC 2 cut(s) 535, 1423
PleI GAGTC 4 cut(s) 122, 209, 517, 1836
PluTI GGCGCC 1 cut(s) 747
PpsI GAGTC 4 cut(s) 122, 209, 517, 1836
PpuMI RGGWCCY 4 cut(s) 61, 812, 1349, 1805
Psp124BI GAGCTC 1 cut(s) 837
Psp5II RGGWCCY 4 cut(s) 61, 812, 1349, 1805
Psp6I CCWGG 7 cut(s) 223, 1352, 1504, 1761, 1777, 1801, 2050
PspFI CCCAGC 1 cut(s) 1377
PspGI CCWGG 7 cut(s) 223, 1352, 1504, 1761, 1777, 1801, 2050
PspPI GGNCC 8 cut(s) 61, 282, 812, 1037, 1349, 1442, 1694, 1805
PspPPI RGGWCCY 4 cut(s) 61, 812, 1349, 1805
PspXI VCTCGAGB 1 cut(s) 836
PstI CTGCAG 1 cut(s) 1459
PsuI RGATCY 1 cut(s) 1162
PvuII CAGCTG 1 cut(s) 1421
RsaI GTAC 3 cut(s) 928, 1631, 2104
RsaNI GTAC 3 cut(s) 927, 1630, 2103
RseI CAYNNNNRTG 1 cut(s) 1526
SacI GAGCTC 1 cut(s) 837
SaqAI TTAA 3 cut(s) 276, 864, 2094
SatI GCNGC 2 cut(s) 534, 1422
Sau3AI GATC 5 cut(s) 31, 79, 1141, 1162, 1487
Sau96I GGNCC 8 cut(s) 61, 282, 812, 1037, 1349, 1442, 1694, 1805
SchI GAGTC 4 cut(s) 122, 209, 518, 1837
SduI GDGCHC 2 cut(s) 837, 1152
SexAI ACCWGGT 1 cut(s) 1777
SfaNI GCATC 4 cut(s) 545, 1174, 1196, 1417
SfcI CTRYAG 1 cut(s) 1455
SfoI GGCGCC 1 cut(s) 745
Sfr274I CTCGAG 1 cut(s) 836
SinI GGWCC 8 cut(s) 61, 282, 812, 1037, 1349, 1442, 1694, 1805
SlaI CTCGAG 1 cut(s) 836
SmiMI CAYNNNNRTG 1 cut(s) 1526
SmlI CTYRAG 2 cut(s) 47, 836
SmoI CTYRAG 2 cut(s) 47, 836
Sse9I AATT 7 cut(s) 210, 343, 1029, 1226, 1659, 1792, 2090
SsiI CCGC 2 cut(s) 635, 1656
SspDI GGCGCC 1 cut(s) 743
SspMI CTAG 2 cut(s) 561, 2169
SstI GAGCTC 1 cut(s) 837
StyI CCWWGG 2 cut(s) 873, 1698
TaaI ACNGT 3 cut(s) 193, 1629, 1788
TaiI ACGT 1 cut(s) 324
TaqI TCGA 8 cut(s) 30, 93, 459, 548, 777, 837, 2098, 2137
TasI AATT 7 cut(s) 210, 343, 1029, 1226, 1659, 1792, 2090
TatI WGTACW 1 cut(s) 2102
TfiI GAWTC 2 cut(s) 110, 1884
Tru1I TTAA 3 cut(s) 276, 864, 2094
Tru9I TTAA 3 cut(s) 276, 864, 2094
TscAI CASTG 2 cut(s) 1497, 1528
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 2 cut(s) 533, 1421
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 9 cut(s) 414, 516, 1041, 1218, 1233, 1254, 1304, 1544, 1826
TspGWI ACGGA 1 cut(s) 999
TspRI CASTG 2 cut(s) 1497, 1528
Van91I CCANNNNNTGG 2 cut(s) 1748, 2051
VpaK11BI GGWCC 8 cut(s) 61, 282, 812, 1037, 1349, 1442, 1694, 1805
XagI CCTNNNNNAGG 1 cut(s) 1776
XapI RAATTY 5 cut(s) 343, 1029, 1226, 1659, 1792
XcmI CCANNNNNNNNNTGG 3 cut(s) 275, 1745, 1862
XhoI CTCGAG 1 cut(s) 836
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 2164
XspI CTAG 2 cut(s) 561, 2169
Zsp2I ATGCAT 4 cut(s) 1189, 1597, 1819, 1864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.