AT1G03610

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010858
Physical Location & Seq
Forward (+)
900732 .. 903070
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03610.2

Sequence Viewer

Length: 927 bp
ATGGTGAATGTTAAAGGGTCAACCAAAAAATCGAATCTTGATCGATTCCTTCATTGCATAACACCCTTAGTGCCACCCCAATCTCTCCCCAAGACGGAGATTAGAACCCTAAATCGATTGTGGCATCCATGGGAGAGACAAAAGGTTGAGTTTTTCAGGTTGAGTGATTTGTGGGATTGTTATGATGAATGGAGCGCTTATGGAGCTAGCGTTCCTATTCATGTTACCAACGGAGAATCTCTTGTTCAATACTATGTTCCTTATCTCTCTGCCATCCAGATTTTCACCTCTCATTCCTCCTTGATCCGCTTAAGGGAAGAGTCTGAAGATGGGGAATGTGAGGGTAGAGATCCGTTTAGCGATTCAGGTAGCGATGAGAGTGTCTCTGAGGAAGGACTTGAGAACAACACGCTCTTGCATCCAAGTGATCGTTTGGGTTATCTTTATCTCCAATACTTTGAGAGATCAGCTCCTTATACCAGAGTTCCTCTGATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCGTTGATCTTTCTCCAGCTAGTTGGATGTCAGTAGCATGGTACCCGATTTACCATATACCAATGGGAAGAACCATTAAAGACTTATCCACGTGTTTCCTCACTTATCACACTCTTTCCTCTTCTTTTCAAGATATGGAACCGGAAGAAAATGGTGGGGACAAGGAGAGAGTGCGGAGGGAAGGGGAAGATATAACTCTGCTCCCATTTGGGATGGCTACTTACAAGATGCAAGGCGATGTTTGGCTTTCGCAGGACCACGATGATCAAGAGAGATTGGCTTCGCTTTACAGTGTTGCGGATTCTTGGCTTAAACAGCTCAGGGTCCAACATCATGACTTCAACTACTTCTGCAATATGTCAATGACTCATCGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

308

Amino Acids

35.77

Weight (kDa)

5.22

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 11 - 229 5.2e-83 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 588
AccB1I GGYRCC 1 cut(s) 588
AciI CCGC 3 cut(s) 307, 721, 845
AclWI GGATC 2 cut(s) 298, 344
AcuI CTGAAG 1 cut(s) 345
AcvI CACGTG 1 cut(s) 639
AfaI GTAC 1 cut(s) 590
AfeI AGCGCT 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 94, 313
AflII CTTAAG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 638
AgsI TTSAA 3 cut(s) 248, 677, 889
AloI GAACNNNNNNTCC 2 cut(s) 195, 227
AluBI AGCT 4 cut(s) 206, 470, 566, 865
AluI AGCT 4 cut(s) 206, 470, 566, 865
Alw26I GTCTC 2 cut(s) 130, 388
AlwI GGATC 2 cut(s) 298, 344
Ama87I CYCGRG 1 cut(s) 526
Aor51HI AGCGCT 1 cut(s) 196
Asp718I GGTACC 1 cut(s) 588
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 2 cut(s) 802, 871
AsuC2I CCSGG 2 cut(s) 527, 528
AsuHPI GGTGA 2 cut(s) 16, 277
AsuNHI GCTAGC 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 526
AvaII GGWCC 2 cut(s) 802, 871
BanI GGYRCC 1 cut(s) 588
BbrPI CACGTG 1 cut(s) 639
BccI CCATC 4 cut(s) 281, 323, 487, 754
BclI TGATCA 1 cut(s) 811
BcnI CCSGG 2 cut(s) 527, 528
BcoDI GTCTC 2 cut(s) 130, 388
BfaI CTAG 2 cut(s) 207, 567
BfoI RGCGCY 1 cut(s) 198
BfrI CTTAAG 1 cut(s) 310
Bme1390I CCNGG 2 cut(s) 527, 528
Bme18I GGWCC 2 cut(s) 802, 871
BmeT110I CYCGRG 1 cut(s) 526
BmgT120I GGNCC 2 cut(s) 802, 871
BmiI GGNNCC 3 cut(s) 590, 687, 872
BmrFI CCNGG 2 cut(s) 527, 528
BmsI GCATC 3 cut(s) 133, 427, 765
BmtI GCTAGC 1 cut(s) 210
BplI GAGNNNNNCTC 4 cut(s) 368, 400, 454, 486
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 866
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 2 cut(s) 527, 528
Bsa29I ATCGAT 2 cut(s) 43, 115
BsaAI YACGTR 1 cut(s) 639
BsaJI CCNNGG 2 cut(s) 128, 526
BsaWI WCCGGW 1 cut(s) 688
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 313
Bse3DI GCAATG 1 cut(s) 52
BseCI ATCGAT 2 cut(s) 43, 115
BseDI CCNNGG 2 cut(s) 128, 526
BseGI GGATG 5 cut(s) 124, 273, 418, 579, 765
BseLI CCNNNNNNNGG 2 cut(s) 94, 313
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 378, 880
BshNI GGYRCC 1 cut(s) 588
BshVI ATCGAT 2 cut(s) 43, 115
BsiHKCI CYCGRG 1 cut(s) 526
BsiSI CCGG 2 cut(s) 527, 689
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 2 cut(s) 94, 313
BsmAI GTCTC 2 cut(s) 130, 388
BsmFI GGGAC 1 cut(s) 719
BsoBI CYCGRG 1 cut(s) 526
Bsp143I GATC 8 cut(s) 40, 303, 349, 427, 464, 501, 553, 811
Bsp19I CCATGG 1 cut(s) 128
BspACI CCGC 3 cut(s) 307, 721, 845
BspCNI CTCAG 2 cut(s) 379, 879
BspDI ATCGAT 2 cut(s) 43, 115
BspHI TCATGA 1 cut(s) 880
BspLI GGNNCC 3 cut(s) 590, 687, 872
BspOI GCTAGC 1 cut(s) 210
BspPI GGATC 2 cut(s) 298, 344
BspT107I GGYRCC 1 cut(s) 588
BspTI CTTAAG 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 128, 526
BssMI GATC 8 cut(s) 40, 303, 349, 427, 464, 501, 553, 811
BssT1I CCWWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 839
Bst6I CTCTTC 2 cut(s) 312, 673
BstAFI CTTAAG 1 cut(s) 310
BstBAI YACGTR 1 cut(s) 639
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 67, 387, 866
BstDSI CCRYGG 1 cut(s) 128
BstF5I GGATG 5 cut(s) 124, 273, 418, 579, 765
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 8 cut(s) 43, 306, 352, 430, 467, 504, 556, 814
BstMAI GTCTC 2 cut(s) 130, 388
BstMBI GATC 8 cut(s) 40, 303, 349, 427, 464, 501, 553, 811
BstMWI GCNNNNNNNGC 2 cut(s) 203, 862
BstSCI CCNGG 2 cut(s) 525, 526
BstX2I RGATCY 1 cut(s) 349
BstXI CCANNNNNNTGG 1 cut(s) 570
BstYI RGATCY 1 cut(s) 349
Bsu15I ATCGAT 2 cut(s) 43, 115
BsuTUI ATCGAT 2 cut(s) 43, 115
BtgI CCRYGG 1 cut(s) 128
BtgZI GCGATG 2 cut(s) 387, 798
BtsCI GGATG 5 cut(s) 124, 273, 418, 579, 765
BtsIMutI CAGTG 1 cut(s) 844
Cac8I GCNNGC 1 cut(s) 208
CciI TCATGA 1 cut(s) 880
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 802, 871
Cfr9I CCCGGG 1 cut(s) 526
ClaI ATCGAT 2 cut(s) 43, 115
Csp6I GTAC 1 cut(s) 589
CviAII CATG 4 cut(s) 129, 221, 585, 881
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 3 cut(s) 67, 387, 866
DpnI GATC 8 cut(s) 42, 305, 351, 429, 466, 503, 555, 813
DpnII GATC 8 cut(s) 40, 303, 349, 427, 464, 501, 553, 811
Eam1104I CTCTTC 2 cut(s) 312, 673
EarI CTCTTC 2 cut(s) 312, 673
Eco130I CCWWGG 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 802, 871
Eco47III AGCGCT 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 345
Eco72I CACGTG 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 4 cut(s) 132, 224, 588, 884
FaqI GGGAC 1 cut(s) 719
FatI CATG 4 cut(s) 128, 220, 584, 880
FbaI TGATCA 1 cut(s) 811
FokI GGATG 5 cut(s) 111, 260, 405, 586, 772
FspBI CTAG 2 cut(s) 207, 567
GlaI GCGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 546
HaeII RGCGCY 1 cut(s) 198
HapII CCGG 2 cut(s) 527, 689
HhaI GCGC 1 cut(s) 197
Hin1II CATG 4 cut(s) 132, 224, 588, 884
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 7 cut(s) 34, 45, 236, 320, 362, 848, 913
HpaII CCGG 2 cut(s) 527, 689
HphI GGTGA 2 cut(s) 16, 277
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 3 cut(s) 325, 388, 492
Hpy188III TCNNGA 5 cut(s) 38, 277, 677, 815, 881
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 3 cut(s) 59, 386, 722
HpyCH4III ACNGT 1 cut(s) 839
HpyCH4IV ACGT 1 cut(s) 638
HpyCH4V TGCA 4 cut(s) 57, 418, 778, 900
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 862
HpyF3I CTNAG 3 cut(s) 67, 387, 866
HpySE526I ACGT 1 cut(s) 638
Hsp92II CATG 4 cut(s) 132, 224, 588, 884
HspAI GCGC 1 cut(s) 195
KpnI GGTACC 1 cut(s) 592
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 8 cut(s) 40, 303, 349, 427, 464, 501, 553, 811
LmnI GCTCC 4 cut(s) 192, 203, 475, 753
LpnPI CCDG 9 cut(s) 142, 290, 351, 493, 540, 576, 702, 785, 853
LweI GCATC 3 cut(s) 133, 427, 765
MaeI CTAG 2 cut(s) 207, 567
MaeII ACGT 1 cut(s) 638
MaeIII GTNAC 1 cut(s) 223
MalI GATC 8 cut(s) 42, 305, 351, 429, 466, 503, 555, 813
MboI GATC 8 cut(s) 40, 303, 349, 427, 464, 501, 553, 811
MboII GAAGA 6 cut(s) 329, 338, 627, 660, 704, 746
MflI RGATCY 1 cut(s) 349
MluCI AATT 1 cut(s) 509
MlyI GAGTC 2 cut(s) 329, 907
MmeI TCCRAC 2 cut(s) 551, 898
MnlI CCTC 8 cut(s) 298, 307, 334, 382, 498, 656, 676, 717
MseI TTAA 4 cut(s) 12, 311, 624, 858
MslI CAYNNNNRTG 1 cut(s) 423
MspCI CTTAAG 1 cut(s) 310
MspI CCGG 2 cut(s) 527, 689
MspR9I CCNGG 2 cut(s) 527, 528
MwoI GCNNNNNNNGC 2 cut(s) 203, 862
NciI CCSGG 2 cut(s) 527, 528
NcoI CCATGG 1 cut(s) 128
NdeII GATC 8 cut(s) 40, 303, 349, 427, 464, 501, 553, 811
NheI GCTAGC 1 cut(s) 206
NlaIII CATG 4 cut(s) 132, 224, 588, 884
NlaIV GGNNCC 3 cut(s) 590, 687, 872
PagI TCATGA 1 cut(s) 880
PfeI GAWTC 5 cut(s) 34, 45, 236, 362, 848
PleI GAGTC 2 cut(s) 328, 907
PmaCI CACGTG 1 cut(s) 639
PmlI CACGTG 1 cut(s) 639
PpsI GAGTC 2 cut(s) 328, 907
Ppu21I YACGTR 1 cut(s) 639
PspCI CACGTG 1 cut(s) 639
PspN4I GGNNCC 3 cut(s) 590, 687, 872
PspPI GGNCC 2 cut(s) 802, 871
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 4 cut(s) 12, 311, 624, 858
Sau3AI GATC 8 cut(s) 40, 303, 349, 427, 464, 501, 553, 811
Sau96I GGNCC 2 cut(s) 802, 871
SchI GAGTC 2 cut(s) 329, 907
ScrFI CCNGG 2 cut(s) 527, 528
SetI ASST 9 cut(s) 147, 161, 208, 290, 370, 472, 568, 641, 867
SfaNI GCATC 3 cut(s) 133, 427, 765
SinI GGWCC 2 cut(s) 802, 871
SmaI CCCGGG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 2 cut(s) 310, 398
SmoI CTYRAG 2 cut(s) 310, 398
Sse9I AATT 1 cut(s) 509
SsiI CCGC 3 cut(s) 307, 721, 845
SspMI CTAG 2 cut(s) 207, 567
StyD4I CCNGG 2 cut(s) 525, 526
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 839
TaiI ACGT 1 cut(s) 641
TaqI TCGA 3 cut(s) 32, 43, 115
TasI AATT 1 cut(s) 509
TfiI GAWTC 5 cut(s) 34, 45, 236, 362, 848
Tru1I TTAA 4 cut(s) 12, 311, 624, 858
Tru9I TTAA 4 cut(s) 12, 311, 624, 858
TscAI CASTG 1 cut(s) 844
TspDTI ATGAA 4 cut(s) 41, 201, 209, 522
TspGWI ACGGA 3 cut(s) 110, 246, 342
TspMI CCCGGG 1 cut(s) 526
TspRI CASTG 1 cut(s) 844
Vha464I CTTAAG 1 cut(s) 310
VpaK11BI GGWCC 2 cut(s) 802, 871
XmaI CCCGGG 1 cut(s) 526
XspI CTAG 2 cut(s) 207, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.