Rh7BG155300

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010858
Physical Location & Seq
Forward (+)
11521403 .. 11521888
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG155300.1

Sequence Viewer

Length: 354 bp
ATGTACACCGATTTGTTCTGGTTTTCAAGGTTGGGGATCGGCTACACAGCTAAACCAGAGAGTGACTGTTGGAGTGACGATAGTGACAGCGATAAGAAATCTGTTTCTTTTAGCAATACTACTGCCAGCACATATGCTACTTCAGATGATTCTGTTTCTACCAGTGACCATGAGATTGAGGCCGATTGCCTTCACCACCTGTACTGCCACTACAACGAAACATCTAGTCCTCATGATAGAGTTCCTTTGACCCTCAAGATCAATGAATTAGCTCAAATTTATCCTGGTTTGATGGAGTTTCAAAGCTTGGAGCTCTCTCCTTATAGTTGGATGGCTGTTGCTTGGTATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

117

Amino Acids

13.35

Weight (kDa)

4.41

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 18 - 116 3e-23 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 2 cut(s) 5, 203
AgsI TTSAA 2 cut(s) 27, 302
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 4 cut(s) 50, 272, 306, 313
AluI AGCT 4 cut(s) 50, 272, 306, 313
Alw21I GWGCWC 1 cut(s) 315
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 185
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 315
BccI CCATC 2 cut(s) 286, 325
BciT130I CCWGG 1 cut(s) 285
BfaI CTAG 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 162
BshFI GGCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 315
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 315
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 36, 258
BspANI GGCC 1 cut(s) 182
BspHI TCATGA 1 cut(s) 232
BspPI GGATC 1 cut(s) 44
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 162
BssMI GATC 2 cut(s) 36, 258
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 127
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 2 cut(s) 39, 261
BstMBI GATC 2 cut(s) 36, 258
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 127
CciI TCATGA 1 cut(s) 232
Csp6I GTAC 2 cut(s) 4, 202
CviAII CATG 2 cut(s) 170, 233
CviJI RGCY 7 cut(s) 42, 50, 182, 272, 306, 313, 335
CviKI_1 RGCY 7 cut(s) 42, 50, 182, 272, 306, 313, 335
CviQI GTAC 2 cut(s) 4, 202
DpnI GATC 2 cut(s) 38, 260
DpnII GATC 2 cut(s) 36, 258
Ecl136II GAGCTC 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 315
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 315
FaeI CATG 2 cut(s) 173, 236
FaiI YATR 7 cut(s) 133, 135, 171, 234, 324, 348, 352
FatI CATG 2 cut(s) 169, 232
FauNDI CATATG 1 cut(s) 133
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 315
FspBI CTAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 2 cut(s) 173, 236
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 1 cut(s) 149
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 233, 256
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 68
Hsp92II CATG 2 cut(s) 173, 236
Kzo9I GATC 2 cut(s) 36, 258
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 4, 69, 139, 175, 212, 270, 297
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 4 cut(s) 62, 74, 83, 164
MalI GATC 2 cut(s) 38, 260
MboI GATC 2 cut(s) 36, 258
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 2 cut(s) 266, 276
MmeI TCCRAC 2 cut(s) 50, 308
MnlI CCTC 3 cut(s) 172, 240, 263
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
NdeI CATATG 1 cut(s) 133
NdeII GATC 2 cut(s) 36, 258
NlaIII CATG 2 cut(s) 173, 236
NmuCI GTSAC 4 cut(s) 62, 74, 83, 164
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
RsaI GTAC 2 cut(s) 5, 203
RsaNI GTAC 2 cut(s) 4, 202
SacI GAGCTC 1 cut(s) 315
Sau3AI GATC 2 cut(s) 36, 258
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 315
SetI ASST 6 cut(s) 32, 52, 201, 274, 308, 315
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 266, 276
SspMI CTAG 1 cut(s) 225
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 68
TasI AATT 2 cut(s) 266, 276
TatI WGTACW 2 cut(s) 3, 201
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 4 cut(s) 62, 74, 83, 164
Tsp45I GTSAC 4 cut(s) 62, 74, 83, 164
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 169
XapI RAATTY 1 cut(s) 276
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.