AT4G28150

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010858
Physical Location & Seq
Reverse (-)
13977303 .. 13979487
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28150.3

Sequence Viewer

Length: 858 bp
ATGATGGTTTTTGACAGTGAATCTAACCTAGACCGATTCTTACGCTGCACTACACCGATTGTGCCTGCCTATTCCCTCCCAAAGACACAGATCAAGAACCTTAATCCTCTATGGTATCCGTTGGAGAGCCAGAGCGTCGAGTATTTCAGGTTGGGAGATTTTTGGGATTGTTTCGACGAGTGGAGTGCTTACGGTGCAGGTGTCCCCATTGTATCGGAAACGGGCGAAACATTGGTCCAATACTATGTTCCTTACCTCTCTGCAATCCAGATTTTCACCTCTCATTCTGTTATCAATACTCTTAGGGAGGAGACAGAATCAGGGGATTCAGGGAGCGAGTCGTGTAGCGAGGAGTGGAGATGGGAAGGATGTTCTTCGTCTGAAGAAGGGTTTGATCATCAAGAACCTCTCGATCGCCTCGGTTACTCTTACTTGCAGTATTTCGAGAGATGTACACCTTACTCTAGAGTCCCTCTCATGGATAAGATCAAAGAGTTGGGAGAAAGATACGTAGGGTTGAGGTCATTGAGGAGTGTTGATCTGTCTCCTGCGAGTTGGATGGCTGTTGCTTGGTATCCAATCTATCACATTCCCATGAATAGAAGCATAAAAGACTTGTCTACTTGCTTCCTCACTTACCACACGCTTTCTTCATCTTTCCAAGATGTAAAAAGGGAAGAGGAGAAGGAGAGGATAAGTGTGAGTGCATTTGGGATGGCCACTTACAAGATGCAAGGGAGGCTATGGGATAATGATAGATTGCTTTGCTTTTTGAGCGTAGCAGATTCTTGGCTAAAGCAGCTAAGGGTCCACCACCATGACTTCACCTACTTCACCACTACTACTCATTATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

285

Amino Acids

33.29

Weight (kDa)

5.07

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 8 - 191 4.5e-57 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 620
AcoI YGGCCR 1 cut(s) 717
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 1 cut(s) 478
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 1 cut(s) 802
AluI AGCT 1 cut(s) 802
Alw26I GTCTC 2 cut(s) 305, 549
AoxI GGCC 1 cut(s) 717
ApeKI GCWGC 2 cut(s) 45, 799
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AspS9I GGNCC 2 cut(s) 235, 808
AsuHPI GGTGA 3 cut(s) 268, 817, 826
AvaII GGWCC 2 cut(s) 235, 808
BalI TGGCCA 1 cut(s) 719
BbvI GCAGC 2 cut(s) 32, 811
BccI CCATC 3 cut(s) 354, 553, 709
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciVI GTATCC 2 cut(s) 126, 585
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 305, 549
BfaI CTAG 2 cut(s) 29, 465
BfuAI ACCTGC 1 cut(s) 188
BfuI GTATCC 2 cut(s) 126, 585
BisI GCNGC 2 cut(s) 46, 800
BlsI GCNGC 2 cut(s) 47, 801
Bme18I GGWCC 2 cut(s) 235, 808
BmgT120I GGNCC 2 cut(s) 235, 808
BmiI GGNNCC 1 cut(s) 809
BmsI GCATC 1 cut(s) 720
BplI GAGNNNNNCTC 2 cut(s) 459, 491
Bpu10I CCTNAGC 1 cut(s) 803
BsaAI YACGTR 1 cut(s) 511
BsaJI CCNNGG 1 cut(s) 418
Bsc4I CCNNNNNNNGG 1 cut(s) 478
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 3 cut(s) 374, 564, 720
BseLI CCNNNNNNNGG 1 cut(s) 478
BseRI GAGGAG 4 cut(s) 323, 365, 544, 695
BseXI GCAGC 2 cut(s) 32, 811
BsgI GTGCAG 2 cut(s) 31, 216
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 1 cut(s) 719
BsiEI CGRYCG 1 cut(s) 415
BslFI GGGAC 2 cut(s) 188, 455
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 2 cut(s) 305, 549
BsmFI GGGAC 2 cut(s) 188, 455
BsnI GGCC 1 cut(s) 719
Bsp1407I TGTACA 1 cut(s) 452
Bsp143I GATC 5 cut(s) 90, 394, 412, 486, 538
BspANI GGCC 1 cut(s) 719
BspLI GGNNCC 1 cut(s) 809
BspMI ACCTGC 1 cut(s) 188
BsrGI TGTACA 1 cut(s) 452
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 5 cut(s) 90, 394, 412, 486, 538
Bst4CI ACNGT 2 cut(s) 17, 194
Bst6I CTCTTC 1 cut(s) 672
BstAUI TGTACA 1 cut(s) 452
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 302, 803
BstF5I GGATG 3 cut(s) 374, 564, 720
BstKTI GATC 5 cut(s) 93, 397, 415, 489, 541
BstMAI GTCTC 2 cut(s) 305, 549
BstMBI GATC 5 cut(s) 90, 394, 412, 486, 538
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 4 cut(s) 194, 739, 774, 799
BstSNI TACGTA 1 cut(s) 511
BstV1I GCAGC 2 cut(s) 32, 811
BsuI GTATCC 2 cut(s) 126, 585
BsuRI GGCC 1 cut(s) 719
BtsCI GGATG 3 cut(s) 374, 564, 720
BtsIMutI CAGTG 1 cut(s) 22
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 235, 808
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 453
CviAII CATG 3 cut(s) 478, 595, 818
CviJI RGCY 6 cut(s) 129, 563, 719, 742, 793, 802
CviKI_1 RGCY 6 cut(s) 129, 563, 719, 742, 793, 802
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 2 cut(s) 302, 803
DpnI GATC 5 cut(s) 92, 396, 414, 488, 540
DpnII GATC 5 cut(s) 90, 394, 412, 486, 538
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco105I TACGTA 1 cut(s) 511
Eco47I GGWCC 2 cut(s) 235, 808
Eco57I CTGAAG 1 cut(s) 402
FaeI CATG 3 cut(s) 481, 598, 821
FaiI YATR 7 cut(s) 112, 246, 479, 596, 608, 745, 819
FaqI GGGAC 2 cut(s) 188, 455
FatI CATG 3 cut(s) 477, 594, 817
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 620
Fnu4HI GCNGC 2 cut(s) 46, 800
FokI GGATG 3 cut(s) 381, 571, 727
Fsp4HI GCNGC 2 cut(s) 46, 800
FspBI CTAG 2 cut(s) 29, 465
GluI GCNGC 2 cut(s) 46, 800
HaeIII GGCC 1 cut(s) 719
HgaI GACGC 1 cut(s) 124
Hin1II CATG 3 cut(s) 481, 598, 821
HinfI GANTC 7 cut(s) 20, 36, 317, 326, 338, 468, 785
HphI GGTGA 3 cut(s) 268, 817, 826
Hpy166II GTNNAC 3 cut(s) 455, 621, 811
Hpy188I TCNGA 2 cut(s) 217, 382
Hpy188III TCNNGA 6 cut(s) 94, 268, 401, 410, 445, 465
Hpy8I GTNNAC 3 cut(s) 455, 621, 811
Hpy99I CGWCG 2 cut(s) 140, 179
HpyAV CCTTC 3 cut(s) 359, 380, 679
HpyCH4III ACNGT 2 cut(s) 17, 194
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 6 cut(s) 48, 197, 263, 436, 707, 733
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 739, 774, 799
HpyF3I CTNAG 2 cut(s) 302, 803
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 3 cut(s) 481, 598, 821
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 5 cut(s) 90, 394, 412, 486, 538
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 8 cut(s) 78, 133, 143, 183, 281, 306, 315, 561
Lsp1109I GCAGC 2 cut(s) 32, 811
LweI GCATC 1 cut(s) 720
MaeI CTAG 2 cut(s) 29, 465
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 422
MalI GATC 5 cut(s) 92, 396, 414, 488, 540
MboI GATC 5 cut(s) 90, 394, 412, 486, 538
MboII GAAGA 4 cut(s) 366, 395, 642, 689
MlsI TGGCCA 1 cut(s) 719
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 2 cut(s) 347, 477
MmeI TCCRAC 2 cut(s) 102, 536
Mox20I TGGCCA 1 cut(s) 719
MscI TGGCCA 1 cut(s) 719
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 2 cut(s) 593, 816
Msp20I TGGCCA 1 cut(s) 719
MwoI GCNNNNNNNGC 4 cut(s) 194, 739, 774, 799
NdeII GATC 5 cut(s) 90, 394, 412, 486, 538
NlaIII CATG 3 cut(s) 481, 598, 821
NlaIV GGNNCC 1 cut(s) 809
PaqCI CACCTGC 1 cut(s) 188
PfeI GAWTC 5 cut(s) 20, 36, 317, 326, 785
PkrI GCNGC 2 cut(s) 47, 801
Ple19I CGATCG 1 cut(s) 415
PleI GAGTC 2 cut(s) 346, 476
PpsI GAGTC 2 cut(s) 346, 476
Ppu21I YACGTR 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 809
PspPI GGNCC 2 cut(s) 235, 808
PvuI CGATCG 1 cut(s) 415
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 2 cut(s) 593, 816
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 46, 800
Sau3AI GATC 5 cut(s) 90, 394, 412, 486, 538
Sau96I GGNCC 2 cut(s) 235, 808
SchI GAGTC 2 cut(s) 347, 477
SfaNI GCATC 1 cut(s) 720
SinI GGWCC 2 cut(s) 235, 808
SmiMI CAYNNNNRTG 2 cut(s) 593, 816
SnaBI TACGTA 1 cut(s) 511
SspMI CTAG 2 cut(s) 29, 465
TaaI ACNGT 2 cut(s) 17, 194
TaiI ACGT 1 cut(s) 513
TaqI TCGA 4 cut(s) 138, 174, 411, 444
TaqII GACCGA 1 cut(s) 48
TatI WGTACW 1 cut(s) 452
TfiI GAWTC 5 cut(s) 20, 36, 317, 326, 785
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 22
TseI GCWGC 2 cut(s) 45, 799
TspDTI ATGAA 2 cut(s) 611, 642
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 235, 808
XbaI TCTAGA 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 620
XspI CTAG 2 cut(s) 29, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.